FvH4_5g24900

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008652
Physical Location & Seq
Forward (+)
16325810 .. 16330624
4815 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24900.t3

Sequence Viewer

Length: 780 bp
ATGACACTGCCTCGCCCTCTCCTCTCCAAACCCATCAGCAGCAGCAGAACACCACCACCACCGCTTCTGAGCACTTCTTCAAGACCCAATGCCTTCTTCAATCCCCACTCTCTCAAACTCATCGTCCCCATGGCTGCCGCCAGCTCCAGACCTGGCGTTTCTTCCGCCCGGCCACACTCCTCGTCGCCGATCATCTCTCCCACCGTCGCCTCCGACTCCGCCGCAGCCGCCTCGCCGAGTAGAGTGGAGTTCATTGAGGCAGGCTTGGAGAAGGTTATATATGGGTGTCGGTTTATGACGTTTATGGCGGTTTTGGGGTCTTTGATTGGATCGCTTCTGTGTTACATCAAGGGCTGCACGTATGTTGTACAATCTTTTATTGAATACTTTGCACATCGTAGCAAGGTCATCATGTTACTGATTGATGCCATTGATGTTTATCTTTTGGGAACAGTGATGTTGGTGTTTGGAATGGGTCTTTATGAGCTATTCATCAGCAACCTCGACACGGTGAAGGCACTCTCAGAGGATGAAGCACCTTATACATCGAGTCTTTTTGGCATGTTCATTCTGAAGGCACGACCAAAGTGGTTAGACATATCAACTGTCAATGAACTGAAAACGAAGATTGGCCATGTAATTGTAATGCTCCTTTTAATCGGGTTGTTAGAGAAGAGTATGCTAGCAGTCATACGATCTCCTCTTGACTTGCTTTGCTTTTCAGCCTCAATCCTCCTTTCCTCTGGTTGCCTCCTTTTACTTTCTAAGCTCAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

260

Amino Acids

28.06

Weight (kDa)

9.1

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 93 - 218 9.6e-27 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 62, 138, 165, 219, 222, 228, 308
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 2 cut(s) 170, 631
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 3 cut(s) 81, 100, 383
AjnI CCWGG 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 3 cut(s) 144, 487, 769
AluI AGCT 3 cut(s) 144, 487, 769
Alw21I GWGCWC 1 cut(s) 74
AlwI GGATC 1 cut(s) 337
AoxI GGCC 2 cut(s) 170, 631
ApeKI GCWGC 5 cut(s) 39, 42, 134, 224, 354
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 523
AsuNHI GCTAGC 1 cut(s) 682
BalI TGGCCA 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 5 cut(s) 51, 54, 121, 236, 341
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 169
BfaI CTAG 1 cut(s) 683
BisI GCNGC 8 cut(s) 40, 43, 135, 138, 222, 225, 228, 355
BlsI GCNGC 8 cut(s) 41, 44, 136, 139, 223, 226, 229, 356
Bme1390I CCNGG 2 cut(s) 153, 169
BmrFI CCNGG 2 cut(s) 153, 169
BmsI GCATC 1 cut(s) 415
BmtI GCTAGC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 535
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 59, 537
BseRI GAGGAG 3 cut(s) 11, 169, 690
BseXI GCAGC 5 cut(s) 51, 54, 121, 236, 341
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 2 cut(s) 172, 633
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 508
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 2 cut(s) 172, 633
Bsp1286I GDGCHC 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 3 cut(s) 189, 329, 695
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 7 cut(s) 62, 138, 165, 219, 222, 228, 308
BspANI GGCC 2 cut(s) 172, 633
BspCNI CTCAG 2 cut(s) 60, 536
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 189, 329, 695
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 4 cut(s) 205, 454, 511, 607
Bst6I CTCTTC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 367
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 142, 262, 684
BstDEI CTNAG 3 cut(s) 68, 523, 765
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 3 cut(s) 192, 332, 698
BstMBI GATC 3 cut(s) 189, 329, 695
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 2 cut(s) 151, 167
BstV1I GCAGC 5 cut(s) 51, 54, 121, 236, 341
BsuRI GGCC 2 cut(s) 172, 633
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 535
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 5, 459
Cac8I GCNNGC 3 cut(s) 142, 262, 684
Csp6I GTAC 1 cut(s) 368
CviAII CATG 4 cut(s) 130, 412, 562, 635
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 68, 523, 765
DpnI GATC 3 cut(s) 191, 331, 697
DpnII GATC 3 cut(s) 189, 329, 695
EaeI YGGCCR 2 cut(s) 170, 631
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
EciI GGCGGA 2 cut(s) 154, 208
Eco130I CCWWGG 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 4 cut(s) 133, 415, 565, 638
FaqI GGGAC 1 cut(s) 110
FatI CATG 4 cut(s) 129, 411, 561, 634
Fnu4HI GCNGC 8 cut(s) 40, 43, 135, 138, 222, 225, 228, 355
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 8 cut(s) 40, 43, 135, 138, 222, 225, 228, 355
FspBI CTAG 1 cut(s) 683
GluI GCNGC 8 cut(s) 40, 43, 135, 138, 222, 225, 228, 355
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 172, 633
HapII CCGG 1 cut(s) 169
Hin1II CATG 4 cut(s) 133, 415, 565, 638
HinfI GANTC 2 cut(s) 215, 550
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 523
Hpy188I TCNGA 4 cut(s) 69, 214, 526, 573
Hpy188III TCNNGA 3 cut(s) 81, 147, 704
Hpy99I CGWCG 2 cut(s) 187, 209
HpyAV CCTTC 4 cut(s) 103, 265, 508, 568
HpyCH4III ACNGT 4 cut(s) 205, 454, 511, 607
HpyCH4IV ACGT 2 cut(s) 299, 359
HpyCH4V TGCA 2 cut(s) 357, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 3 cut(s) 68, 523, 765
HpySE526I ACGT 2 cut(s) 299, 359
Hsp92II CATG 4 cut(s) 133, 415, 565, 638
Kzo9I GATC 3 cut(s) 189, 329, 695
LmnI GCTCC 2 cut(s) 149, 654
LpnPI CCDG 7 cut(s) 138, 154, 160, 165, 182, 246, 729
Lsp1109I GCAGC 5 cut(s) 51, 54, 121, 236, 341
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 683
MaeII ACGT 2 cut(s) 299, 359
MaeIII GTNAC 2 cut(s) 341, 414
MalI GATC 3 cut(s) 191, 331, 697
MboI GATC 3 cut(s) 189, 329, 695
MboII GAAGA 5 cut(s) 69, 88, 153, 637, 685
MhlI GDGCHC 1 cut(s) 74
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 1 cut(s) 639
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 2 cut(s) 209, 559
MmeI TCCRAC 1 cut(s) 237
Mox20I TGGCCA 1 cut(s) 633
MscI TGGCCA 1 cut(s) 633
MseI TTAA 1 cut(s) 656
Msp20I TGGCCA 1 cut(s) 633
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 2 cut(s) 153, 169
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 169
NcoI CCATGG 1 cut(s) 129
NdeII GATC 3 cut(s) 189, 329, 695
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 4 cut(s) 133, 415, 565, 638
NmeAIII GCCGAG 1 cut(s) 261
NspI RCATGY 1 cut(s) 565
PkrI GCNGC 8 cut(s) 41, 44, 136, 139, 223, 226, 229, 356
PleI GAGTC 2 cut(s) 209, 558
PpsI GAGTC 2 cut(s) 209, 558
Ppu21I YACGTR 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SaqAI TTAA 1 cut(s) 656
SatI GCNGC 8 cut(s) 40, 43, 135, 138, 222, 225, 228, 355
Sau3AI GATC 3 cut(s) 189, 329, 695
SchI GAGTC 2 cut(s) 209, 559
ScrFI CCNGG 2 cut(s) 153, 169
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 1 cut(s) 415
Sse9I AATT 1 cut(s) 639
SsiI CCGC 7 cut(s) 62, 138, 165, 219, 222, 228, 308
SspMI CTAG 1 cut(s) 683
StyD4I CCNGG 2 cut(s) 151, 167
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 4 cut(s) 205, 454, 511, 607
TaiI ACGT 2 cut(s) 302, 362
TaqI TCGA 2 cut(s) 504, 548
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 367
TauI GCSGC 3 cut(s) 140, 224, 230
Tru1I TTAA 1 cut(s) 656
Tru9I TTAA 1 cut(s) 656
TscAI CASTG 2 cut(s) 12, 459
TseI GCWGC 5 cut(s) 39, 42, 134, 224, 354
TspDTI ATGAA 5 cut(s) 241, 481, 546, 556, 627
TspRI CASTG 2 cut(s) 12, 459
XceI RCATGY 1 cut(s) 565
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.