Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008652

Physical Location & Seq

Genomic Coordinates Reverse (-)

1527779 .. 1535975

Gene Structure 8197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G014100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACACTGCCTCGGCCTTTGCTCTCAAAACCCATTAGAACAGTACCACCTCCACCTTTACCATCATCCTTCAACAAAACTGCAAAACTGAGTCCAAATTTGAATAGGGTCTCTGGGTTTAGTCCCCATGCTTTCAAATTCATCGTCTCCATGGCTGCCAGCTCTAGACATGGCGTTTCTTCTGACCCTCAACATTCATCGTCCCAGCTGATCCCTTCCAATGTCGCCTCCGACTCCAGTTCCTTTCAGAATTCACCAAGTAAAGTAGAAGATATTGAGGGACACTTAGACAAGGTAATATACAGATTTCGGTTCATGGCGTTTTTGGGAGTTTTGGGGTCTTTGATTGGGTCGTTTCTTTGTTTCATCAAGGGCTGCACTTATGTTGTACGGTCTTTCATGGAATACAGTGTAAATCGCAGTAAAGTGATCTGGTCGCTGGTTGAGGCCATTGATGTCTATCTTTTGGGAACAGTGATGTTGGTGTTTGGAATGGGTCTTTATGAGCTCTTTATCAGCAATCTCGACATTGTGAAGTCTTCACAAGAGAATAAACCTGCTGACAGATCAAATCTTTTAGGCTTGTTCACTCTGAAGGAACGACCAAAATGGTTAGATATAACAACTGTGAACGAGCTGAAAACGAAGCTTGGCCATGTCATAGTGATGCTACTTCTAATTGGGTTGTTCGAGAAGAGTAAGAAAGCAGTTATACAATCTCCTTTTGACTTGCTTTGCTTTTCTGCCTCTGTCCTCCTTTCTTCTGGTTGCCTGTTTTTATTGTCTAAGCTCAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

267

Amino Acids

29.42

Weight (kDa)

9.45

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19390 AT4G19390
fragaria_vesca	FvH4_5g24900 FvH4_5g24900 FvH4_5g24900
prunus_persica	Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1
pyrus_communis	pycom06g00970
rosa_chinensis	RchiOBHm_Chr7g0215231
rosa_laevigata	RLG00000002682
rosa_multiflora	Rmu_sc0006273.1_g000017 Rmu_sc0029270.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244450
rosa_rugosa	Rorug07G0150800 Rorug07G0150900
rosa_samantha	Rh7AG287800 Rh7BG279500 Rh7CG307600 Rh7DG291100
rosa_wichuraiana	Rw7G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	3 cut(s)	97, 137, 250
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	2 cut(s)	45, 390
AgsI	TTSAA	3 cut(s)	73, 103, 136
AluBI	AGCT	6 cut(s)	162, 208, 508, 637, 649, 790
AluI	AGCT	6 cut(s)	162, 208, 508, 637, 649, 790
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	2 cut(s)	115, 151
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	3 cut(s)	14, 447, 652
ApeKI	GCWGC	2 cut(s)	155, 375
ApoI	RAATTY	3 cut(s)	97, 137, 250
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AsuHPI	GGTGA	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	142, 362
BccI	CCATC	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	115, 151
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	2 cut(s)	156, 376
BlsI	GCNGC	2 cut(s)	157, 377
BmsI	GCATC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	11, 150
Bse1I	ACTGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	11, 150
BseGI	GGATG	1 cut(s)	65
BseJI	GATNNNNATC	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	142, 362
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	361
BshFI	GGCC	3 cut(s)	16, 449, 654
BsiHKAI	GWGCWC	1 cut(s)	510
BslFI	GGGAC	3 cut(s)	108, 187, 294
BsmAI	GTCTC	2 cut(s)	115, 151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	3 cut(s)	108, 187, 294
BsnI	GGCC	3 cut(s)	16, 449, 654
Bso31I	GGTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	210, 429, 566
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	3 cut(s)	16, 449, 654
BspCNI	CTCAG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	11, 150
BssMI	GATC	3 cut(s)	210, 429, 566
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	5 cut(s)	43, 393, 410, 475, 628
Bst6I	CTCTTC	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	89, 286, 786
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	213, 432, 569
BstMAI	GTCTC	2 cut(s)	115, 151
BstMBI	GATC	3 cut(s)	210, 429, 566
BstV1I	GCAGC	2 cut(s)	142, 362
BstV2I	GAAGAC	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	16, 449, 654
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	3 cut(s)	5, 415, 480
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	44, 389
CviAII	CATG	6 cut(s)	128, 151, 170, 316, 400, 656
CviQI	GTAC	2 cut(s)	44, 389
DdeI	CTNAG	3 cut(s)	89, 286, 786
DpnI	GATC	3 cut(s)	212, 431, 568
DpnII	GATC	3 cut(s)	210, 429, 566
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Ecl136II	GAGCTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	614
EcoICRI	GAGCTC	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	6 cut(s)	131, 154, 173, 319, 403, 659
FaqI	GGGAC	3 cut(s)	108, 187, 294
FatI	CATG	6 cut(s)	127, 150, 169, 315, 399, 655
Fnu4HI	GCNGC	2 cut(s)	156, 376
FokI	GGATG	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	2 cut(s)	156, 376
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	2 cut(s)	156, 376
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	16, 449, 654
Hin1II	CATG	6 cut(s)	131, 154, 173, 319, 403, 659
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	2 cut(s)	91, 233
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	2 cut(s)	588, 631
Hpy188I	TCNGA	4 cut(s)	184, 232, 249, 594
Hpy188III	TCNNGA	3 cut(s)	165, 524, 691
Hpy8I	GTNNAC	2 cut(s)	588, 631
HpyAV	CCTTC	3 cut(s)	79, 225, 589
HpyCH4III	ACNGT	5 cut(s)	43, 393, 410, 475, 628
HpyCH4V	TGCA	2 cut(s)	83, 378
HpyF3I	CTNAG	3 cut(s)	89, 286, 786
Hsp92II	CATG	6 cut(s)	131, 154, 173, 319, 403, 659
Kzo9I	GATC	3 cut(s)	210, 429, 566
LpnPI	CCDG	9 cut(s)	99, 172, 218, 250, 418, 425, 570, 750, 785
Lsp1109I	GCAGC	2 cut(s)	142, 362
LweI	GCATC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	165
MalI	GATC	3 cut(s)	212, 431, 568
MboI	GATC	3 cut(s)	210, 429, 566
MboII	GAAGA	5 cut(s)	171, 281, 531, 706, 753
MhlI	GDGCHC	1 cut(s)	510
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	4 cut(s)	97, 137, 250, 678
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	2 cut(s)	100, 227
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	21, 60, 198, 238, 271, 439, 757, 764
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	665
Msp20I	TGGCCA	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	210, 429, 566
NlaIII	CATG	6 cut(s)	131, 154, 173, 319, 403, 659
PkrI	GCNGC	2 cut(s)	157, 377
PleI	GAGTC	2 cut(s)	99, 227
PpsI	GAGTC	2 cut(s)	99, 227
Psp124BI	GAGCTC	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	45, 390
RsaNI	GTAC	2 cut(s)	44, 389
RseI	CAYNNNNRTG	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	510
SatI	GCNGC	2 cut(s)	156, 376
Sau3AI	GATC	3 cut(s)	210, 429, 566
SchI	GAGTC	2 cut(s)	100, 227
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	665
Sse9I	AATT	4 cut(s)	97, 137, 250, 678
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	5 cut(s)	43, 393, 410, 475, 628
TaqI	TCGA	2 cut(s)	525, 690
TasI	AATT	4 cut(s)	97, 137, 250, 678
TscAI	CASTG	3 cut(s)	12, 415, 480
TseI	GCWGC	2 cut(s)	155, 375
TspDTI	ATGAA	5 cut(s)	130, 186, 304, 355, 388
TspRI	CASTG	3 cut(s)	12, 415, 480
XapI	RAATTY	3 cut(s)	97, 137, 250
XbaI	TCTAGA	1 cut(s)	164
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.