Rw7G024570

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008652
Physical Location & Seq
Forward (+)
30284861 .. 30289585
4725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024570.1

Sequence Viewer

Length: 792 bp
ATGACATTACCTCGCCCTCTGTTCTCAAAACCCATCAGCAGAACAGCACCACCACCACTTCTGATCACAACTTCAAAACCCAATAATACACACTTGAATGGCTTCTCTGCTTTCAATCCTCATGCTCTCAAGCTCATCGTCTCCATGGCTGCAAGCCCCGGACCCGGCATTTCTTCCGCCCCACAGCACTCCTCGTCGCCGCTGATCCCTTCCACCATCGCCTCCGACTCTGGCGCCTCGCAGAAGTCACCTAGTGTACTAGAGGCCATTGAGGCAGACTTGGAGAAGGTTATATATGGATGTCGGTTCATGGCGTTTATGGCGGTTTTGGGGTCTTTGATTGGATCGCTTCTGTGTTACATCAAGGGTTGCACTTATGTTGTACAATCTTTCATGGAATACTTTGTACATCGTAGTAAGGTCATCTTGTTGCTGATTGATGCCATTGATGTTTATCTTTTGGGAACAGTGATGTTGGTGTTTGGAATGGGTCTTTATGAGCTATTCATCAGCAACCTCGACAAGGTGAATTCTCTCTCAGAGGATGAAGCATGTACATCGAGTCTTTTTGGCATGTTCATTATGAAGGCACGACCAAAATGGTTAGATATAACAACCGTCAATGAACTGAAAACGAAGATTGGCCATGTAATTGTAATGCTCCTTTTAATCGGGTTGTTAGAGAAGAGTATGTTAGCAGTTATACAATCTCCTCTCGACTTGCTTTGCTTTTCAGCCTCTGTCCTCCTCTCCTCTGGTTGCCTCCTTTTACTTTCTAAGCTCAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

263

Amino Acids

28.43

Weight (kDa)

8.18

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 98 - 229 2.8e-35 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 3 cut(s) 177, 200, 323
AclWI GGATC 2 cut(s) 199, 352
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 4 cut(s) 258, 384, 408, 556
AfiI CCNNNNNNNGG 2 cut(s) 164, 523
AgsI TTSAA 3 cut(s) 75, 97, 115
AluBI AGCT 3 cut(s) 133, 502, 781
AluI AGCT 3 cut(s) 133, 502, 781
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 2 cut(s) 199, 352
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 2 cut(s) 264, 643
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 529
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 2 cut(s) 159, 165
AsuHPI GGTGA 2 cut(s) 240, 538
AvaII GGWCC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 41, 224
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 2 cut(s) 159, 165
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 252, 260
BfoI RGCGCY 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 2 cut(s) 150, 200
BlsI GCNGC 2 cut(s) 151, 201
Bme1390I CCNGG 2 cut(s) 159, 165
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 163, 235
BmrFI CCNGG 2 cut(s) 159, 165
BmsI GCATC 1 cut(s) 430
BpuEI CTTGAG 2 cut(s) 113, 767
BpuMI CCSGG 2 cut(s) 159, 165
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 144, 157
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 523
Bse8I GATNNNNATC 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 144, 157
BseGI GGATG 2 cut(s) 305, 550
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 164, 523
BseMII CTCAG 1 cut(s) 552
BseRI GAGGAG 4 cut(s) 181, 702, 737, 742
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 2 cut(s) 266, 645
BshNI GGYRCC 1 cut(s) 233
BsiSI CCGG 2 cut(s) 159, 165
BslI CCNNNNNNNGG 2 cut(s) 164, 523
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 2 cut(s) 266, 645
Bsp1407I TGTACA 3 cut(s) 382, 406, 554
Bsp143I GATC 3 cut(s) 63, 204, 344
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 3 cut(s) 177, 200, 323
BspANI GGCC 2 cut(s) 266, 645
BspCNI CTCAG 1 cut(s) 551
BspLI GGNNCC 2 cut(s) 163, 235
BspPI GGATC 2 cut(s) 199, 352
BspT107I GGYRCC 1 cut(s) 233
BsrGI TGTACA 3 cut(s) 382, 406, 554
BssECI CCNNGG 2 cut(s) 144, 157
BssMI GATC 3 cut(s) 63, 204, 344
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 469, 619
Bst6I CTCTTC 1 cut(s) 680
BstACI GRCGYC 1 cut(s) 234
BstAUI TGTACA 3 cut(s) 382, 406, 554
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 538, 777
BstDSI CCRYGG 1 cut(s) 144
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 305, 550
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 66, 207, 347
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 63, 204, 344
BstMWI GCNNNNNNNGC 2 cut(s) 272, 320
BstNSI RCATGY 2 cut(s) 555, 577
BstSCI CCNGG 2 cut(s) 157, 163
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 266, 645
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 305, 550
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 4 cut(s) 257, 383, 407, 555
CviAII CATG 7 cut(s) 122, 145, 310, 394, 552, 574, 647
CviJI RGCY 9 cut(s) 102, 133, 149, 156, 266, 502, 645, 737, 781
CviKI_1 RGCY 9 cut(s) 102, 133, 149, 156, 266, 502, 645, 737, 781
CviQI GTAC 4 cut(s) 257, 383, 407, 555
DdeI CTNAG 2 cut(s) 538, 777
DinI GGCGCC 1 cut(s) 235
DpnI GATC 3 cut(s) 65, 206, 346
DpnII GATC 3 cut(s) 63, 204, 344
DraIII CACNNNGTG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
EciI GGCGGA 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 7 cut(s) 125, 148, 313, 397, 555, 577, 650
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 7 cut(s) 121, 144, 309, 393, 551, 573, 646
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 150, 200
FokI GGATG 2 cut(s) 312, 557
Fsp4HI GCNGC 2 cut(s) 150, 200
FspBI CTAG 2 cut(s) 252, 260
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 150, 200
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 2 cut(s) 266, 645
HapII CCGG 2 cut(s) 159, 165
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 7 cut(s) 125, 148, 313, 397, 555, 577, 650
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 2 cut(s) 227, 562
HpaII CCGG 2 cut(s) 159, 165
HphI GGTGA 2 cut(s) 240, 538
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 3 cut(s) 63, 226, 541
Hpy188III TCNNGA 1 cut(s) 716
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 219, 280, 580
HpyCH4III ACNGT 2 cut(s) 469, 619
HpyCH4V TGCA 2 cut(s) 152, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 320
HpyF3I CTNAG 2 cut(s) 538, 777
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 7 cut(s) 125, 148, 313, 397, 555, 577, 650
HspAI GCGC 1 cut(s) 234
KasI GGCGCC 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 204, 344
LmnI GCTCC 1 cut(s) 666
LpnPI CCDG 4 cut(s) 172, 178, 216, 741
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 430
MaeI CTAG 2 cut(s) 252, 260
MaeIII GTNAC 2 cut(s) 246, 356
MalI GATC 3 cut(s) 65, 206, 346
MboI GATC 3 cut(s) 63, 204, 344
MboII GAAGA 3 cut(s) 165, 649, 697
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 2 cut(s) 529, 651
MluNI TGGCCA 1 cut(s) 645
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 2 cut(s) 221, 571
MmeI TCCRAC 1 cut(s) 249
Mox20I TGGCCA 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 645
MseI TTAA 1 cut(s) 668
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 645
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 2 cut(s) 159, 165
MspR9I CCNGG 2 cut(s) 159, 165
MwoI GCNNNNNNNGC 2 cut(s) 272, 320
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 2 cut(s) 159, 165
NcoI CCATGG 1 cut(s) 144
NdeII GATC 3 cut(s) 63, 204, 344
NlaIII CATG 7 cut(s) 125, 148, 313, 397, 555, 577, 650
NlaIV GGNNCC 2 cut(s) 163, 235
NmuCI GTSAC 1 cut(s) 246
NspI RCATGY 2 cut(s) 555, 577
PdmI GAANNNNTTC 1 cut(s) 101
PkrI GCNGC 2 cut(s) 151, 201
PleI GAGTC 2 cut(s) 221, 570
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 2 cut(s) 221, 570
PspN4I GGNNCC 2 cut(s) 163, 235
PspPI GGNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 740
RsaI GTAC 4 cut(s) 258, 384, 408, 556
RsaNI GTAC 4 cut(s) 257, 383, 407, 555
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 2 cut(s) 150, 200
Sau3AI GATC 3 cut(s) 63, 204, 344
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 2 cut(s) 221, 571
ScrFI CCNGG 2 cut(s) 159, 165
SetI ASST 9 cut(s) 13, 135, 253, 291, 423, 504, 519, 528, 783
SfaNI GCATC 1 cut(s) 430
SfoI GGCGCC 1 cut(s) 235
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 128, 782
SmoI CTYRAG 2 cut(s) 128, 782
Sse9I AATT 2 cut(s) 529, 651
SsiI CCGC 3 cut(s) 177, 200, 323
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 2 cut(s) 252, 260
StyD4I CCNGG 2 cut(s) 157, 163
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 469, 619
TaqI TCGA 3 cut(s) 519, 560, 717
TasI AATT 2 cut(s) 529, 651
TatI WGTACW 4 cut(s) 256, 382, 406, 554
TauI GCSGC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 7 cut(s) 298, 382, 496, 561, 568, 599, 639
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 161
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 529
XceI RCATGY 2 cut(s) 555, 577
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 252, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.