RLG00000002682

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008652
Physical Location & Seq
Reverse (-)
38085271 .. 38089543
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002682

Sequence Viewer

Length: 789 bp
ATGACATTACCTCGCCTTCTGTTCTCAAAACCCATCAGCAGAACAGCACCACCACCACTTCTGATCACAGCTTCAAAACCCAATACACACTTGAATGGCTTCTCTGCTTTCAATCCTCATGCTCTCAAGTTCATCGCCTCCATGGCTGCAAGCTCCGGACCCGGCATTTCTTCCGCCACACAGCACTCCTCGTCGCCGCTGATCCCTTCCACCATCGCCTCCGACTCTGGCGCCTCACAGAAGTCACCTAGTGGACTAGAGGCCATTGAGGCAGACTTGGAGAAGGTTATATATGGATGTCGGTTTATGGCGTTTATGGCGGTTTTGGGGTCTTTGATTGGATCGCTTCTGTGTTACATCAAGGGCTGCACTTATGTTGTACAATCTTTCATGGAATACTTTGCACATCGTAGTAAGGTCATCTTGTTGCTGATTGATGCCATTGATGTTTATCTTTTGGGAACAGTGATGTTGGTGTTTGGAATGGGTCTTTATGAGCTATTCATCAGCAACCTCGACAAGGTGAATTCTCTTTCAGAGGATGAAGCATGTACATCGAGTCTTTTTGGCATGTTCATTATGAAGGCACGACCAAAGTGGTTAGATATAACAACCGTCAATGAACTGAAAACGAAGATTGGCCATGTAATTGTAATGCTCCTTTTAATCGGGTTGTTAGAGAAGAGTATGTTAGCAGTTATACAATCTCCTCTCGACTTGCTTTGCTTTTCAGCCTCTGTCCTCCTTTCCTCTGGTTGCCTCCTTTTACTTTCTAAGCTCAAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

263

Amino Acids

28.23

Weight (kDa)

8.18

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 97 - 228 1.5e-35 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 3 cut(s) 174, 197, 320
AclWI GGATC 2 cut(s) 196, 349
AcoI YGGCCR 1 cut(s) 640
AcsI RAATTY 1 cut(s) 526
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 2 cut(s) 381, 553
AfiI CCNNNNNNNGG 1 cut(s) 520
AgsI TTSAA 3 cut(s) 75, 94, 112
AluBI AGCT 4 cut(s) 71, 153, 499, 778
AluI AGCT 4 cut(s) 71, 153, 499, 778
AlwI GGATC 2 cut(s) 196, 349
AlwNI CAGNNNCTG 1 cut(s) 737
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 2 cut(s) 261, 640
ApeKI GCWGC 2 cut(s) 146, 366
ApoI RAATTY 1 cut(s) 526
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 237, 535
AvaII GGWCC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 642
BanI GGYRCC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 133, 353
BccI CCATC 2 cut(s) 41, 221
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 1 cut(s) 162
BfaI CTAG 2 cut(s) 249, 257
BfoI RGCGCY 1 cut(s) 234
BglI GCCNNNNNGGC 2 cut(s) 143, 269
BisI GCNGC 3 cut(s) 147, 197, 367
BlsI GCNGC 3 cut(s) 148, 198, 368
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 160, 232
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 110, 764
BpuMI CCSGG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse8I GATNNNNATC 1 cut(s) 450
BseAI TCCGGA 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 302, 547
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 520
BseRI GAGGAG 2 cut(s) 178, 699
BseXI GCAGC 2 cut(s) 133, 353
BsgI GTGCAG 1 cut(s) 352
BshFI GGCC 2 cut(s) 263, 642
BshNI GGYRCC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 156, 162
BslI CCNNNNNNNGG 1 cut(s) 520
BsnI GGCC 2 cut(s) 263, 642
Bsp13I TCCGGA 1 cut(s) 155
Bsp1407I TGTACA 2 cut(s) 379, 551
Bsp143I GATC 3 cut(s) 63, 201, 341
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 3 cut(s) 174, 197, 320
BspANI GGCC 2 cut(s) 263, 642
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 160, 232
BspPI GGATC 2 cut(s) 196, 349
BspT107I GGYRCC 1 cut(s) 230
BsrGI TGTACA 2 cut(s) 379, 551
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 63, 201, 341
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 466, 616
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 1 cut(s) 231
BstAUI TGTACA 2 cut(s) 379, 551
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 774
BstDSI CCRYGG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 2 cut(s) 302, 547
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 66, 204, 344
BstMBI GATC 3 cut(s) 63, 201, 341
BstMWI GCNNNNNNNGC 3 cut(s) 143, 269, 317
BstNSI RCATGY 2 cut(s) 552, 574
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 133, 353
BsuRI GGCC 2 cut(s) 263, 642
BtgI CCRYGG 1 cut(s) 141
BtgZI GCGATG 2 cut(s) 118, 199
BtsCI GGATG 2 cut(s) 302, 547
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 380, 552
CviAII CATG 6 cut(s) 119, 142, 391, 549, 571, 644
CviQI GTAC 2 cut(s) 380, 552
DdeI CTNAG 1 cut(s) 774
DinI GGCGCC 1 cut(s) 232
DpnI GATC 3 cut(s) 65, 203, 343
DpnII GATC 3 cut(s) 63, 201, 341
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 6 cut(s) 122, 145, 394, 552, 574, 647
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FatI CATG 6 cut(s) 118, 141, 390, 548, 570, 643
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 147, 197, 367
FokI GGATG 2 cut(s) 309, 554
Fsp4HI GCNGC 3 cut(s) 147, 197, 367
FspBI CTAG 2 cut(s) 249, 257
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 147, 197, 367
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 263, 642
HapII CCGG 2 cut(s) 156, 162
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 6 cut(s) 122, 145, 394, 552, 574, 647
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 2 cut(s) 224, 559
HpaII CCGG 2 cut(s) 156, 162
HphI GGTGA 2 cut(s) 237, 535
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 63, 223, 538
Hpy188III TCNNGA 2 cut(s) 156, 713
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 4 cut(s) 26, 216, 277, 577
HpyCH4III ACNGT 2 cut(s) 466, 616
HpyCH4V TGCA 3 cut(s) 149, 369, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 269, 317
HpyF3I CTNAG 1 cut(s) 774
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 6 cut(s) 122, 145, 394, 552, 574, 647
HspAI GCGC 1 cut(s) 231
KasI GGCGCC 1 cut(s) 230
Kpn2I TCCGGA 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 201, 341
LmnI GCTCC 2 cut(s) 158, 663
LpnPI CCDG 4 cut(s) 169, 175, 213, 738
Lsp1109I GCAGC 2 cut(s) 133, 353
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 249, 257
MaeIII GTNAC 2 cut(s) 243, 353
MalI GATC 3 cut(s) 65, 203, 343
MboI GATC 3 cut(s) 63, 201, 341
MboII GAAGA 3 cut(s) 162, 646, 694
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 2 cut(s) 526, 648
MluNI TGGCCA 1 cut(s) 642
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 2 cut(s) 218, 568
MmeI TCCRAC 1 cut(s) 246
Mox20I TGGCCA 1 cut(s) 642
MroI TCCGGA 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 642
MseI TTAA 1 cut(s) 665
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 2 cut(s) 156, 162
MspR9I CCNGG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 143, 269, 317
NarI GGCGCC 1 cut(s) 231
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 141
NdeII GATC 3 cut(s) 63, 201, 341
NlaIII CATG 6 cut(s) 122, 145, 394, 552, 574, 647
NlaIV GGNNCC 2 cut(s) 160, 232
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 2 cut(s) 552, 574
PdmI GAANNNNTTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 148, 198, 368
PleI GAGTC 2 cut(s) 218, 567
PluTI GGCGCC 1 cut(s) 234
PpsI GAGTC 2 cut(s) 218, 567
PspN4I GGNNCC 2 cut(s) 160, 232
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 381, 553
RsaNI GTAC 2 cut(s) 380, 552
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 3 cut(s) 147, 197, 367
Sau3AI GATC 3 cut(s) 63, 201, 341
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 218, 568
ScrFI CCNGG 1 cut(s) 162
SfaNI GCATC 1 cut(s) 427
SfoI GGCGCC 1 cut(s) 232
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 2 cut(s) 125, 779
SmoI CTYRAG 2 cut(s) 125, 779
Sse9I AATT 2 cut(s) 526, 648
SsiI CCGC 3 cut(s) 174, 197, 320
SspDI GGCGCC 1 cut(s) 230
SspMI CTAG 2 cut(s) 249, 257
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 466, 616
TaqI TCGA 3 cut(s) 516, 557, 714
TasI AATT 2 cut(s) 526, 648
TatI WGTACW 2 cut(s) 379, 551
TauI GCSGC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 2 cut(s) 146, 366
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 7 cut(s) 121, 379, 493, 558, 565, 596, 636
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 1 cut(s) 526
XceI RCATGY 2 cut(s) 552, 574
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 249, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.