Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001897

Physical Location & Seq

Genomic Coordinates Forward (+)

10961556 .. 10964089

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20310.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAATTTCAGGACGGCGAATGAGAAGATTCAGGATGAGATTCCGAAGAGATCACCTCACCGGCGGCGAGAACATTGAAAACGAAGCCTCGTGTTGCTATTGTGACCTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTTTAGGACGACGATTCTCCGGAGTTTTGAAAGTCTGGTTCTCAATCGGACTAGGATTCGGCGTCGCTTCTCTGATCCTCGTCACCGTCTTCCTTCTCCTTCAGTTTCACTCTAACCCTTTATTCTCCAATCGTCTCACTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCAGGCATTGCCTATGTACTTGTCTCCACTGTCATTACAGTTTCAGTTCATGAACTTGGTCACGCTCTTGCTGCTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATCTTTCCGGGTGGTCTTGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTCGTATTTACTGTGCCGGTATTTGGCATAATGCAGTGTTCTGTGCACTCTGTGTGTTCGCTTTGTTTCTCTTGCCTGTTATGTTGTCACCTTTCTACAAACACGGTGAAAGCCTCACGGTTGTGGATGTGCCTTCTGTGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGTCGTTGGATGGCATACAAGTCCACAAACCTAGTGAATGGCTTGAATTGGCAGCAATTTTGGATAAGGAAAATAGTAAAACATCGAATGGTTCCTTGTACCTTGGAGGTTCAAGGAGATTTCATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTACAAAGGGAAAATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATGCTCAAATGCAGCCATAAGAGAGGTATCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCTTCAAAAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAACCAAAGTGACTGCGTATGTCCACAGCAATGCAATCTCCAGGCGTATTGTGGACAGAGATCACTTATAAAAGAACCTCGTCACAGGATTGCTCTAGACTTGGTCTGGATTTCAATACCTCAAATTGTCTTGGCACGTTTGTTTTTGTCGGTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006355 GO:0006357 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0012505 GO:0016020 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0031090 GO:0031293 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031984 GO:0033554 GO:0033619 GO:0034976 GO:0036003 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044093 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070011 GO:0071214 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0104004 GO:0140096 GO:1900457 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:1905897 GO:1990440 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_M50

Protein Analysis

398

Amino Acids

43.95

Weight (kDa)

7.89

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M50	PF02163	9 - 347	1e-11	Peptidase family M50

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310
fragaria_vesca	FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520
malus_domestica	MD10G1221200.v1.1
prunus_persica	Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1
pyrus_communis	pycom10g18680
rosa_chinensis	RchiOBHm_Chr5g0022471
rosa_laevigata	RLG00000032662
rosa_multiflora	Rmu_sc0000178.1_g000016 Rmu_sc0005639.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056580
rosa_rugosa	Rorug05G0073900 Rorug05G0073900 Rorug05G0073900 Rorug05G0074000 Rorug05G0074000
rosa_samantha	Rh5AG160800 Rh5BG159800 Rh5CG174100 Rh5DG160400
rosa_wichuraiana	Rw5G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1106
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccII	CGCG	1 cut(s)	313
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	2 cut(s)	66, 285
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	6, 121
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	3 cut(s)	342, 794, 866
AfiI	CCNNNNNNNGG	2 cut(s)	537, 665
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	8 cut(s)	80, 127, 172, 740, 807, 857, 998, 1152
AjnI	CCWGG	2 cut(s)	679, 1077
AleI	CACNNNNGTG	1 cut(s)	635
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	4 cut(s)	446, 470, 504, 994
AluI	AGCT	4 cut(s)	446, 470, 504, 994
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	3 cut(s)	281, 352, 681
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	5 cut(s)	395, 398, 443, 746, 944
ApoI	RAATTY	2 cut(s)	6, 121
AsuC2I	CCSGG	2 cut(s)	456, 903
AsuHPI	GGTGA	8 cut(s)	47, 52, 217, 594, 632, 917, 1019, 1030
AsuII	TTCGAA	1 cut(s)	922
BaeGI	GKGCMC	1 cut(s)	562
BaeI	ACNNNNGTAYC	2 cut(s)	300, 333
BauI	CACGAG	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	5 cut(s)	382, 385, 455, 758, 956
BccI	CCATC	5 cut(s)	143, 412, 698, 1004, 1008
BceAI	ACGGC	3 cut(s)	32, 272, 416
BciT130I	CCWGG	2 cut(s)	681, 1079
BcnI	CCSGG	2 cut(s)	456, 903
BcoDI	GTCTC	3 cut(s)	281, 352, 681
BfaI	CTAG	4 cut(s)	194, 402, 726, 1133
BisI	GCNGC	6 cut(s)	67, 396, 399, 444, 747, 945
BlsI	GCNGC	6 cut(s)	68, 397, 400, 445, 748, 946
Bme1390I	CCNGG	4 cut(s)	456, 681, 903, 1079
BmiI	GGNNCC	1 cut(s)	787
BmrFI	CCNGG	4 cut(s)	456, 681, 903, 1079
BmsI	GCATC	1 cut(s)	964
BpiI	GAAGAC	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
BpmI	CTGGAG	2 cut(s)	702, 1061
Bpu14I	TTCGAA	1 cut(s)	922
BpuMI	CCSGG	2 cut(s)	456, 903
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	796
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 665
Bse118I	RCCGGY	2 cut(s)	62, 530
Bse3DI	GCAATG	4 cut(s)	330, 426, 438, 1073
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	681, 1079
BseDI	CCNNGG	1 cut(s)	796
BseGI	GGATG	5 cut(s)	42, 646, 709, 979, 1019
BseLI	CCNNNNNNNGG	2 cut(s)	537, 665
BseMI	GCAATG	4 cut(s)	330, 426, 438, 1073
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	5 cut(s)	382, 385, 455, 758, 956
Bsh1236I	CGCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	5 cut(s)	63, 162, 455, 531, 903
BslFI	GGGAC	2 cut(s)	824, 885
BslI	CCNNNNNNNGG	2 cut(s)	537, 665
BsmAI	GTCTC	3 cut(s)	281, 352, 681
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	824, 885
Bsp119I	TTCGAA	1 cut(s)	922
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	52, 216, 907, 1097, 1191
BspACI	CCGC	2 cut(s)	66, 285
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	787
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	922
BsrDI	GCAATG	4 cut(s)	330, 426, 438, 1073
BsrFI	RCCGGY	2 cut(s)	62, 530
BssAI	RCCGGY	2 cut(s)	62, 530
BssECI	CCNNGG	1 cut(s)	796
BssMI	GATC	5 cut(s)	52, 216, 907, 1097, 1191
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	796
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	681, 1079
Bst4CI	ACNGT	7 cut(s)	229, 355, 364, 527, 620, 634, 836
Bst6I	CTCTTC	2 cut(s)	43, 519
BstACI	GRCGYC	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	922
BstF5I	GGATG	5 cut(s)	42, 646, 709, 979, 1019
BstFNI	CGCG	1 cut(s)	313
BstKTI	GATC	5 cut(s)	55, 219, 910, 1100, 1194
BstMAI	GTCTC	3 cut(s)	281, 352, 681
BstMBI	GATC	5 cut(s)	52, 216, 907, 1097, 1191
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	2 cut(s)	681, 1079
BstSCI	CCNGG	4 cut(s)	454, 679, 901, 1077
BstSLI	GKGCMC	1 cut(s)	562
BstUI	CGCG	1 cut(s)	313
BstV1I	GCAGC	5 cut(s)	382, 385, 455, 758, 956
BstV2I	GAAGAC	1 cut(s)	223
BtsCI	GGATG	5 cut(s)	42, 646, 709, 979, 1019
BtsI	GCAGTG	2 cut(s)	555, 912
BtsIMutI	CAGTG	3 cut(s)	351, 555, 912
CciI	TCATGA	1 cut(s)	373
Cfr10I	RCCGGY	2 cut(s)	62, 530
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	341, 793, 865
CviAII	CATG	2 cut(s)	374, 933
CviJI	RGCY	8 cut(s)	89, 446, 470, 504, 627, 736, 947, 994
CviKI_1	RGCY	8 cut(s)	89, 446, 470, 504, 627, 736, 947, 994
CviQI	GTAC	3 cut(s)	341, 793, 865
DpnI	GATC	5 cut(s)	54, 218, 909, 1099, 1193
DpnII	GATC	5 cut(s)	52, 216, 907, 1097, 1191
DraIII	CACNNNGTG	1 cut(s)	566
Eam1104I	CTCTTC	2 cut(s)	43, 519
EarI	CTCTTC	2 cut(s)	43, 519
EciI	GGCGGA	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	796
Eco32I	GATATC	1 cut(s)	985
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	679, 1077
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	796
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	2 cut(s)	377, 936
FaiI	YATR	9 cut(s)	339, 375, 543, 596, 710, 934, 950, 1057, 1106
FaqI	GGGAC	2 cut(s)	824, 885
FatI	CATG	2 cut(s)	373, 932
Fnu4HI	GCNGC	6 cut(s)	67, 396, 399, 444, 747, 945
FokI	GGATG	5 cut(s)	49, 653, 716, 986, 1026
Fsp4HI	GCNGC	6 cut(s)	67, 396, 399, 444, 747, 945
FspBI	CTAG	4 cut(s)	194, 402, 726, 1133
GluI	GCNGC	6 cut(s)	67, 396, 399, 444, 747, 945
GsuI	CTGGAG	2 cut(s)	702, 1061
HapII	CCGG	5 cut(s)	63, 162, 455, 531, 903
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	377, 936
HindIII	AAGCTT	2 cut(s)	502, 992
HinfI	GANTC	5 cut(s)	30, 42, 156, 198, 297
HpaII	CCGG	5 cut(s)	63, 162, 455, 531, 903
HphI	GGTGA	8 cut(s)	47, 52, 217, 594, 632, 917, 1019, 1030
Hpy166II	GTNNAC	4 cut(s)	560, 718, 1061, 1091
Hpy188I	TCNGA	6 cut(s)	47, 191, 216, 852, 1030, 1196
Hpy188III	TCNNGA	7 cut(s)	12, 34, 118, 162, 374, 1133, 1144
Hpy8I	GTNNAC	4 cut(s)	560, 718, 1061, 1091
Hpy99I	CGWCG	2 cut(s)	156, 209
HpyAV	CCTTC	7 cut(s)	245, 251, 315, 401, 657, 820, 854
HpyCH4III	ACNGT	7 cut(s)	229, 355, 364, 527, 620, 634, 836
HpyCH4IV	ACGT	1 cut(s)	1174
HpyCH4V	TGCA	8 cut(s)	443, 490, 548, 560, 917, 944, 977, 1071
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	1174
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	377, 936
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	52, 216, 907, 1097, 1191
LguI	GCTCTTC	1 cut(s)	519
Lsp1109I	GCAGC	5 cut(s)	382, 385, 455, 758, 956
LweI	GCATC	1 cut(s)	964
MaeI	CTAG	4 cut(s)	194, 402, 726, 1133
MaeII	ACGT	1 cut(s)	1174
MaeIII	GTNAC	9 cut(s)	104, 223, 383, 600, 668, 830, 1018, 1046, 1118
MalI	GATC	5 cut(s)	54, 218, 909, 1099, 1193
MboI	GATC	5 cut(s)	52, 216, 907, 1097, 1191
MboII	GAAGA	6 cut(s)	39, 60, 130, 223, 506, 869
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	6 cut(s)	6, 121, 740, 750, 890, 1161
MluI	ACGCGT	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	9 cut(s)	68, 100, 119, 230, 638, 794, 949, 1125, 1167
MroI	TCCGGA	1 cut(s)	161
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	635, 1066
MspI	CCGG	5 cut(s)	63, 162, 455, 531, 903
MspR9I	CCNGG	4 cut(s)	456, 681, 903, 1079
MvaI	CCWGG	2 cut(s)	681, 1079
MvnI	CGCG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	395
NciI	CCSGG	2 cut(s)	456, 903
NdeII	GATC	5 cut(s)	52, 216, 907, 1097, 1191
NlaIII	CATG	2 cut(s)	377, 936
NlaIV	GGNNCC	1 cut(s)	787
NmuCI	GTSAC	7 cut(s)	104, 223, 383, 600, 1018, 1046, 1118
NspV	TTCGAA	1 cut(s)	922
OliI	CACNNNNGTG	1 cut(s)	635
PagI	TCATGA	1 cut(s)	373
PciSI	GCTCTTC	1 cut(s)	519
PfeI	GAWTC	5 cut(s)	30, 42, 156, 198, 297
PflFI	GACNNNGTC	1 cut(s)	1139
PflMI	CCANNNNNTGG	1 cut(s)	665
PfoI	TCCNGGA	1 cut(s)	679
PkrI	GCNGC	6 cut(s)	68, 397, 400, 445, 748, 946
PsiI	TTATAA	1 cut(s)	1106
Psp6I	CCWGG	2 cut(s)	679, 1077
PspGI	CCWGG	2 cut(s)	679, 1077
PspN4I	GGNNCC	1 cut(s)	787
PsyI	GACNNNGTC	1 cut(s)	1139
RsaI	GTAC	3 cut(s)	342, 794, 866
RsaNI	GTAC	3 cut(s)	341, 793, 865
RseI	CAYNNNNRTG	2 cut(s)	635, 1066
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	6 cut(s)	67, 396, 399, 444, 747, 945
Sau3AI	GATC	5 cut(s)	52, 216, 907, 1097, 1191
ScrFI	CCNGG	4 cut(s)	456, 681, 903, 1079
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	1 cut(s)	964
SfuI	TTCGAA	1 cut(s)	922
SgrAI	CRCCGGYG	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	635, 1066
Sse9I	AATT	6 cut(s)	6, 121, 740, 750, 890, 1161
SsiI	CCGC	2 cut(s)	66, 285
SspMI	CTAG	4 cut(s)	194, 402, 726, 1133
StyD4I	CCNGG	4 cut(s)	454, 679, 901, 1077
StyI	CCWWGG	1 cut(s)	796
TaaI	ACNGT	7 cut(s)	229, 355, 364, 527, 620, 634, 836
TaiI	ACGT	1 cut(s)	1177
TaqI	TCGA	3 cut(s)	119, 779, 922
TasI	AATT	6 cut(s)	6, 121, 740, 750, 890, 1161
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	5 cut(s)	30, 42, 156, 198, 297
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	358, 555, 919
TseFI	GTSAC	7 cut(s)	104, 223, 383, 600, 1018, 1046, 1118
TseI	GCWGC	5 cut(s)	395, 398, 443, 746, 944
Tsp45I	GTSAC	7 cut(s)	104, 223, 383, 600, 1018, 1046, 1118
TspDTI	ATGAA	4 cut(s)	362, 390, 427, 806
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	358, 555, 919
Tth111I	GACNNNGTC	1 cut(s)	1139
Van91I	CCANNNNNTGG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	558
XapI	RAATTY	2 cut(s)	6, 121
XbaI	TCTAGA	1 cut(s)	1132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1085
XspI	CTAG	4 cut(s)	194, 402, 726, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.