RchiOBHm_Chr5g0022471

Membrane-bound transcription factor site-2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
16490077 .. 16494313
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30241

Sequence Viewer

Length: 1563 bp
ATGGAAGGAAGACGATTCAGAAGGTTCGGGATGCCAAGACGAAACCCACAAACCCACTCTCCCAATCTCCTCCCCACTCACACCCACACTCCCTCCGCCTCCACCATATCCTGCTGCTACTGCGACTACAAATTCTGGGCCTTCAACGACCCCCTCTTCCACTTGGGCCGAAACCACTCCCTCCCTCTCAAAGCATGGTTCTCCGTCGGCGTCGGCTTCGGCCTCACCGCCCTCCTCGCCGCCTCCCTCCTCCTCATCTTTGAACTGGGCCGTGCTCTCACTCTCTTCCCTAACCACCTCTTGTTGGATACCTTCCTCTCATCTGTCTCCGCCAACCCATTGAACGACGCCGTCTATGTAGTGGTTGCGACCCTCGTTTCGGTTTCGGTGCACGAGTTCGGGCACGCGCTCGCTGCTGCCAGTGAGGGGATACGTATGGAGTATGTGGCTGTGTTTGTTGCGTGTATCTTTCCTGGGGCTCTGGTGGCTTTTAATGATGATGTAATGCAAGCATTGCCTTGTTTTACCGCGCTTCGAGTATACTGTGCTGGGATTTGGCACAATGCAGTGTGCTGTGCGGTTTGCGGGTTGGCATTGCTACTCCTGCCGGTGTTGCTGTTTCCGTTTTACATACACGGTGAAAGCCCCATGGTGTTGGGTGTACCTTCTACGTCGCCTTTGTCTGGTTACTTGTCTCGTGGTGATGTGATTGTATCGGTGGATGGTGTACCCATCCGTAATGCGCAAGAGTGGATGGATATGGCGGCTTTCTTGAATGAATTGTCACTTAATGATGGAAACCACAACGTGGATGTCCAAAGCGTTGGGACAGTCAGTAACAGAAAGGGGTACTGTGTTCCTAATCCTATGATGGAAGAAAGCAAACAGATGCTTATACTAGATAATCAGTATTCATGTCCTGACGGTCTTACGTCATTTACAACTGTTCCCTGTGCTTATACAAGCATCAATATTGAGAAAACCTACTGCTTGAATGCTAAGGATGTAGTCAAGCTTAATAAATGTGGTGATGGATGGCCGCCAACCATCACCAACGGCAGCAACTGCATATGTTCACAGGACGAATCCTGCTTAAGTCCAATTCAAATTCCCGGCTTAATATGGGTTGAGGTCACTTATTCAAGGCCCTATTCTCTGGAATGCTTGCGAGTTAGAAGAAAATCTTTTGCGGACTCAAGATATTCTGATTCGATGGAATCAAACTGTGGCGGGACTTTTGTTTTTGTTGGTAACGTTATCTCCATGGCACGCTCAGTCCAGTTAACTGCATATCGACCTCGTTGGGCATTTCCTTTGGGTACATATCTTCCAAATGTACTTGAAAGGATTTTGAGATGCACATTCCAGGTCTCTCTAACACTAGCTCTTCTCAACAGTTTGCCGGTATACTTACTGGATGGTGAATCAATTCTAGAGGCGAGTCTTCTACACTTCACGTTGCTATCCCCAAGGAAAAGAAGGACAGTTGTTCAAGTTTGTCTTTTTGGGGGCACAGTCATTTCCATCCTAGCCTTTTTGAGGATTGTTTTATATGGTTTGTAG

Protein Analysis

520

Amino Acids

57.26

Weight (kDa)

7.12

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50 PF02163 120 - 500 5.7e-18 Peptidase family M50
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 744
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 2 cut(s) 540, 1407
AccII CGCG 2 cut(s) 407, 530
AclI AACGTT 1 cut(s) 1254
AcoI YGGCCR 1 cut(s) 1037
AcsI RAATTY 2 cut(s) 131, 1107
AcyI GRCGYC 2 cut(s) 210, 348
AdeI CACNNNGTG 1 cut(s) 808
AfaI GTAC 5 cut(s) 663, 729, 851, 1321, 1338
AfiI CCNNNNNNNGG 6 cut(s) 304, 379, 426, 683, 808, 1539
AflII CTTAAG 1 cut(s) 1093
AgsI TTSAA 9 cut(s) 145, 263, 343, 775, 994, 1106, 1143, 1343, 1493
AjnI CCWGG 2 cut(s) 472, 1365
AluBI AGCT 2 cut(s) 1015, 1385
AluI AGCT 2 cut(s) 1015, 1385
Alw21I GWGCWC 2 cut(s) 277, 393
Alw26I GTCTC 3 cut(s) 331, 699, 1375
Alw44I GTGCAC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 1065
AoxI GGCC 6 cut(s) 138, 166, 220, 268, 1037, 1145
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 4 cut(s) 114, 413, 416, 1059
ApoI RAATTY 2 cut(s) 131, 1107
ArsI GACNNNNNNTTYG 2 cut(s) 361, 393
Asp700I GAANNNNTTC 1 cut(s) 1428
AspLEI GCGC 3 cut(s) 409, 532, 745
AspS9I GGNCC 4 cut(s) 138, 166, 268, 1146
AsuC2I CCSGG 1 cut(s) 1113
AsuHPI GGTGA 6 cut(s) 217, 650, 713, 1040, 1042, 1433
BaeGI GKGCMC 3 cut(s) 393, 405, 1514
BanII GRGCYC 1 cut(s) 481
BauI CACGAG 2 cut(s) 392, 696
BbsI GAAGAC 2 cut(s) 16, 1436
Bbv12I GWGCWC 2 cut(s) 277, 393
BbvI GCAGC 4 cut(s) 101, 400, 403, 1071
BceAI ACGGC 3 cut(s) 255, 335, 1072
BciT130I CCWGG 2 cut(s) 474, 1367
BciVI GTATCC 2 cut(s) 301, 423
BcnI CCSGG 1 cut(s) 1113
BcoDI GTCTC 3 cut(s) 331, 699, 1375
BfaI CTAG 4 cut(s) 899, 1382, 1433, 1529
BfrI CTTAAG 1 cut(s) 1093
BfuI GTATCC 2 cut(s) 301, 423
BisI GCNGC 7 cut(s) 115, 240, 414, 417, 765, 1040, 1060
BlsI GCNGC 7 cut(s) 116, 241, 415, 418, 766, 1041, 1061
Bme1390I CCNGG 3 cut(s) 474, 1113, 1367
BmgT120I GGNCC 4 cut(s) 138, 166, 268, 1146
BmrFI CCNGG 3 cut(s) 474, 1113, 1367
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 4 cut(s) 21, 879, 975, 1346
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 16, 1436
Bpu10I CCTNAGC 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 1180
BpuMI CCSGG 1 cut(s) 1113
BsaAI YACGTR 1 cut(s) 434
BsaHI GRCGYC 2 cut(s) 210, 348
BsaI GGTCTC 1 cut(s) 1375
BsaJI CCNNGG 4 cut(s) 473, 648, 1263, 1469
BsaXI ACNNNNNCTCC 8 cut(s) 43, 73, 73, 77, 103, 107, 1244, 1274
Bsc4I CCNNNNNNNGG 6 cut(s) 304, 379, 426, 683, 808, 1539
Bse118I RCCGGY 2 cut(s) 607, 1402
Bse1I ACTGG 4 cut(s) 270, 420, 1279, 1419
Bse3DI GCAATG 2 cut(s) 512, 593
BseBI CCWGG 2 cut(s) 474, 1367
BseDI CCNNGG 4 cut(s) 473, 648, 1263, 1469
BseGI GGATG 9 cut(s) 36, 727, 732, 759, 817, 1009, 1040, 1423, 1524
BseLI CCNNNNNNNGG 6 cut(s) 304, 379, 426, 683, 808, 1539
BseMI GCAATG 2 cut(s) 512, 593
BseMII CTCAG 1 cut(s) 1287
BseNI ACTGG 4 cut(s) 270, 420, 1279, 1419
BseRI GAGGAG 4 cut(s) 59, 224, 239, 242
BseSI GKGCMC 3 cut(s) 393, 405, 1514
BseXI GCAGC 4 cut(s) 101, 400, 403, 1071
BseYI CCCAGC 1 cut(s) 548
Bsh1236I CGCG 2 cut(s) 407, 530
BshFI GGCC 6 cut(s) 140, 168, 222, 270, 1039, 1147
BsiHKAI GWGCWC 2 cut(s) 277, 393
BsiSI CCGG 3 cut(s) 608, 1113, 1403
BslFI GGGAC 2 cut(s) 841, 1246
BslI CCNNNNNNNGG 6 cut(s) 304, 379, 426, 683, 808, 1539
BsmAI GTCTC 3 cut(s) 331, 699, 1375
BsmFI GGGAC 2 cut(s) 841, 1246
BsmI GAATGC 2 cut(s) 1000, 1166
BsnI GGCC 6 cut(s) 140, 168, 222, 270, 1039, 1147
Bso31I GGTCTC 1 cut(s) 1375
Bsp1286I GDGCHC 5 cut(s) 277, 393, 405, 481, 1514
Bsp19I CCATGG 2 cut(s) 648, 1263
BspANI GGCC 6 cut(s) 140, 168, 222, 270, 1039, 1147
BspCNI CTCAG 1 cut(s) 1286
BspFNI CGCG 2 cut(s) 407, 530
BspQI GCTCTTC 1 cut(s) 1392
BspTI CTTAAG 1 cut(s) 1093
BspTNI GGTCTC 1 cut(s) 1375
BsrDI GCAATG 2 cut(s) 512, 593
BsrFI RCCGGY 2 cut(s) 607, 1402
BsrI ACTGG 4 cut(s) 270, 420, 1279, 1419
BssAI RCCGGY 2 cut(s) 607, 1402
BssECI CCNNGG 4 cut(s) 473, 648, 1263, 1469
BssNAI GTATAC 2 cut(s) 541, 1408
BssNI GRCGYC 2 cut(s) 210, 348
BssSI CACGAG 2 cut(s) 392, 696
BssT1I CCWWGG 3 cut(s) 648, 1263, 1469
Bst1107I GTATAC 2 cut(s) 541, 1408
Bst2BI CACGAG 2 cut(s) 392, 696
Bst2UI CCWGG 2 cut(s) 474, 1367
Bst6I CTCTTC 3 cut(s) 161, 290, 1392
BstACI GRCGYC 2 cut(s) 210, 348
BstAFI CTTAAG 1 cut(s) 1093
BstAPI GCANNNNNTGC 2 cut(s) 514, 1065
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 405, 411, 510, 1166, 1270
BstDEI CTNAG 2 cut(s) 999, 1273
BstDSI CCRYGG 2 cut(s) 648, 1263
BstENI CCTNNNNNAGG 1 cut(s) 1537
BstF5I GGATG 9 cut(s) 36, 727, 732, 759, 817, 1009, 1040, 1423, 1524
BstFNI CGCG 2 cut(s) 407, 530
BstHHI GCGC 3 cut(s) 409, 532, 745
BstMAI GTCTC 3 cut(s) 331, 699, 1375
BstMWI GCNNNNNNNGC 8 cut(s) 120, 236, 413, 485, 514, 604, 613, 1065
BstNI CCWGG 2 cut(s) 474, 1367
BstSCI CCNGG 3 cut(s) 472, 1111, 1365
BstSLI GKGCMC 3 cut(s) 393, 405, 1514
BstSNI TACGTA 1 cut(s) 434
BstUI CGCG 2 cut(s) 407, 530
BstV1I GCAGC 4 cut(s) 101, 400, 403, 1071
BstV2I GAAGAC 2 cut(s) 16, 1436
BstXI CCANNNNNNTGG 2 cut(s) 655, 824
BstZ17I GTATAC 2 cut(s) 541, 1408
BsuI GTATCC 2 cut(s) 301, 423
BsuRI GGCC 6 cut(s) 140, 168, 222, 270, 1039, 1147
BtgI CCRYGG 2 cut(s) 648, 1263
BtsCI GGATG 9 cut(s) 36, 727, 732, 759, 817, 1009, 1040, 1423, 1524
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 427, 573
Cac8I GCNNGC 5 cut(s) 405, 411, 510, 1166, 1270
CaiI CAGNNNCTG 1 cut(s) 1065
CfoI GCGC 3 cut(s) 409, 532, 745
Cfr10I RCCGGY 2 cut(s) 607, 1402
Cfr13I GGNCC 4 cut(s) 138, 166, 268, 1146
CseI GACGC 2 cut(s) 199, 356
Csp6I GTAC 5 cut(s) 662, 728, 850, 1320, 1337
CviAII CATG 4 cut(s) 195, 649, 915, 1264
CviQI GTAC 5 cut(s) 662, 728, 850, 1320, 1337
DdeI CTNAG 2 cut(s) 999, 1273
DraIII CACNNNGTG 1 cut(s) 808
EaeI YGGCCR 1 cut(s) 1037
Eam1104I CTCTTC 3 cut(s) 161, 290, 1392
EarI CTCTTC 3 cut(s) 161, 290, 1392
EciI GGCGGA 2 cut(s) 85, 319
Eco105I TACGTA 1 cut(s) 434
Eco130I CCWWGG 3 cut(s) 648, 1263, 1469
Eco24I GRGCYC 1 cut(s) 481
Eco31I GGTCTC 1 cut(s) 1375
EcoNI CCTNNNNNAGG 1 cut(s) 1537
EcoO109I RGGNCCY 1 cut(s) 1146
EcoRII CCWGG 2 cut(s) 472, 1365
EcoT14I CCWWGG 3 cut(s) 648, 1263, 1469
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 3 cut(s) 648, 1263, 1469
FaeI CATG 4 cut(s) 198, 652, 918, 1267
FalI AAGNNNNNCTT 4 cut(s) 1168, 1200, 1485, 1517
FaqI GGGAC 2 cut(s) 841, 1246
FatI CATG 4 cut(s) 194, 648, 914, 1263
FauI CCCGC 2 cut(s) 578, 1223
FauNDI CATATG 1 cut(s) 1070
FblI GTMKAC 2 cut(s) 540, 1407
Fnu4HI GCNGC 7 cut(s) 115, 240, 414, 417, 765, 1040, 1060
FokI GGATG 9 cut(s) 43, 719, 734, 766, 824, 1016, 1047, 1430, 1511
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 7 cut(s) 115, 240, 414, 417, 765, 1040, 1060
FspBI CTAG 4 cut(s) 899, 1382, 1433, 1529
FspI TGCGCA 1 cut(s) 744
GlaI GCGC 3 cut(s) 408, 531, 744
GluI GCNGC 7 cut(s) 115, 240, 414, 417, 765, 1040, 1060
GsaI CCCAGC 1 cut(s) 552
HaeIII GGCC 6 cut(s) 140, 168, 222, 270, 1039, 1147
HapII CCGG 3 cut(s) 608, 1113, 1403
HgaI GACGC 2 cut(s) 199, 356
HhaI GCGC 3 cut(s) 409, 532, 745
Hin1I GRCGYC 2 cut(s) 210, 348
Hin1II CATG 4 cut(s) 198, 652, 918, 1267
Hin6I GCGC 3 cut(s) 407, 530, 743
HinP1I GCGC 3 cut(s) 407, 530, 743
HincII GTYRAC 1 cut(s) 1284
HindII GTYRAC 1 cut(s) 1284
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 7 cut(s) 15, 1085, 1193, 1208, 1217, 1424, 1441
HpaI GTTAAC 1 cut(s) 1284
HpaII CCGG 3 cut(s) 608, 1113, 1403
HphI GGTGA 6 cut(s) 217, 650, 713, 1040, 1042, 1433
Hpy166II GTNNAC 7 cut(s) 391, 541, 662, 728, 1076, 1284, 1408
Hpy188I TCNGA 2 cut(s) 20, 1207
Hpy188III TCNNGA 6 cut(s) 28, 772, 920, 1157, 1197, 1433
Hpy8I GTNNAC 7 cut(s) 391, 541, 662, 728, 1076, 1284, 1408
Hpy99I CGWCG 4 cut(s) 209, 215, 350, 676
HpyAV CCTTC 5 cut(s) 15, 151, 322, 675, 1473
HpyCH4IV ACGT 6 cut(s) 433, 671, 807, 932, 1254, 1457
HpyCH4V TGCA 6 cut(s) 391, 508, 566, 1068, 1289, 1359
HpyF10VI GCNNNNNNNGC 8 cut(s) 120, 236, 413, 485, 514, 604, 613, 1065
HpyF3I CTNAG 2 cut(s) 999, 1273
HpySE526I ACGT 6 cut(s) 433, 671, 807, 932, 1254, 1457
Hsp92I GRCGYC 2 cut(s) 210, 348
Hsp92II CATG 4 cut(s) 198, 652, 918, 1267
HspAI GCGC 3 cut(s) 407, 530, 743
KspAI GTTAAC 1 cut(s) 1284
LguI GCTCTTC 1 cut(s) 1392
Lsp1109I GCAGC 4 cut(s) 101, 400, 403, 1071
LweI GCATC 4 cut(s) 21, 879, 975, 1346
MaeI CTAG 4 cut(s) 899, 1382, 1433, 1529
MaeII ACGT 6 cut(s) 433, 671, 807, 932, 1254, 1457
MaeIII GTNAC 5 cut(s) 686, 783, 836, 1132, 1250
MboII GAAGA 8 cut(s) 21, 148, 277, 887, 1188, 1319, 1379, 1436
MhlI GDGCHC 5 cut(s) 277, 393, 405, 481, 1514
MluCI AATT 5 cut(s) 131, 779, 1101, 1107, 1428
MlyI GAGTC 2 cut(s) 1187, 1450
MmeI TCCRAC 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 1428
MseI TTAA 6 cut(s) 492, 789, 1017, 1094, 1118, 1283
MspCI CTTAAG 1 cut(s) 1093
MspI CCGG 3 cut(s) 608, 1113, 1403
MspR9I CCNGG 3 cut(s) 474, 1113, 1367
Mva1269I GAATGC 2 cut(s) 1000, 1166
MvaI CCWGG 2 cut(s) 474, 1367
MvnI CGCG 2 cut(s) 407, 530
MwoI GCNNNNNNNGC 8 cut(s) 120, 236, 413, 485, 514, 604, 613, 1065
NciI CCSGG 1 cut(s) 1113
NcoI CCATGG 2 cut(s) 648, 1263
NdeI CATATG 1 cut(s) 1070
NlaIII CATG 4 cut(s) 198, 652, 918, 1267
NmuCI GTSAC 2 cut(s) 783, 1132
NsbI TGCGCA 1 cut(s) 744
PciSI GCTCTTC 1 cut(s) 1392
PctI GAATGC 2 cut(s) 1000, 1166
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 5 cut(s) 15, 1085, 1208, 1217, 1424
PflFI GACNNNGTC 1 cut(s) 350
PflMI CCANNNNNTGG 1 cut(s) 808
PkrI GCNGC 7 cut(s) 116, 241, 415, 418, 766, 1041, 1061
PleI GAGTC 2 cut(s) 1187, 1449
PpsI GAGTC 2 cut(s) 1187, 1449
Ppu21I YACGTR 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 1254
Psp6I CCWGG 2 cut(s) 472, 1365
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 2 cut(s) 472, 1365
PspPI GGNCC 4 cut(s) 138, 166, 268, 1146
PstNI CAGNNNCTG 1 cut(s) 1065
PsyI GACNNNGTC 1 cut(s) 350
RsaI GTAC 5 cut(s) 663, 729, 851, 1321, 1338
RsaNI GTAC 5 cut(s) 662, 728, 850, 1320, 1337
SapI GCTCTTC 1 cut(s) 1392
SaqAI TTAA 6 cut(s) 492, 789, 1017, 1094, 1118, 1283
SatI GCNGC 7 cut(s) 115, 240, 414, 417, 765, 1040, 1060
Sau96I GGNCC 4 cut(s) 138, 166, 268, 1146
SchI GAGTC 2 cut(s) 1187, 1450
ScrFI CCNGG 3 cut(s) 474, 1113, 1367
SduI GDGCHC 5 cut(s) 277, 393, 405, 481, 1514
SfaNI GCATC 4 cut(s) 21, 879, 975, 1346
SmlI CTYRAG 2 cut(s) 1093, 1195
SmoI CTYRAG 2 cut(s) 1093, 1195
SnaBI TACGTA 1 cut(s) 434
Sse9I AATT 5 cut(s) 131, 779, 1101, 1107, 1428
SspI AATATT 1 cut(s) 973
SspMI CTAG 4 cut(s) 899, 1382, 1433, 1529
StyD4I CCNGG 3 cut(s) 472, 1111, 1365
StyI CCWWGG 3 cut(s) 648, 1263, 1469
TaiI ACGT 6 cut(s) 436, 674, 810, 935, 1257, 1460
TaqI TCGA 3 cut(s) 535, 1211, 1294
TasI AATT 5 cut(s) 131, 779, 1101, 1107, 1428
TatI WGTACW 1 cut(s) 1336
TauI GCSGC 3 cut(s) 242, 767, 1042
TfiI GAWTC 5 cut(s) 15, 1085, 1208, 1217, 1424
Tru1I TTAA 6 cut(s) 492, 789, 1017, 1094, 1118, 1283
Tru9I TTAA 6 cut(s) 492, 789, 1017, 1094, 1118, 1283
TscAI CASTG 2 cut(s) 427, 573
TseFI GTSAC 2 cut(s) 783, 1132
TseI GCWGC 4 cut(s) 114, 413, 416, 1059
Tsp45I GTSAC 2 cut(s) 783, 1132
TspDTI ATGAA 2 cut(s) 792, 903
TspGWI ACGGA 3 cut(s) 193, 612, 725
TspRI CASTG 2 cut(s) 427, 573
Tth111I GACNNNGTC 1 cut(s) 350
Van91I CCANNNNNTGG 1 cut(s) 808
Vha464I CTTAAG 1 cut(s) 1093
VneI GTGCAC 1 cut(s) 389
XagI CCTNNNNNAGG 1 cut(s) 1537
XapI RAATTY 2 cut(s) 131, 1107
XbaI TCTAGA 1 cut(s) 1432
XmiI GTMKAC 2 cut(s) 540, 1407
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 4 cut(s) 899, 1382, 1433, 1529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.