Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001897

Physical Location & Seq

Genomic Coordinates Forward (+)

17147839 .. 17151554

Gene Structure 3716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGTATGTGGCTGTGTTTGTTGCGTGTATCTTTCCTGGGGCTCTGGTGGCTTTTAATGATGATGTAATGCAAGCATTGCCTTGTTTTACCGCGCTTCGAGTATACTGTGCTGGGATTTGGCACAATGCAGTGTGCTGTGCGGTTTGCGGGTTGGCTTTGCTACTCCTGCCGGTGTTGTTGTTTCCGTTTTACATACACGGTGAAAGCCCCATGGTGTTGGGTGTACCTTCTACGTCGCCTTTGTCTGGTTACTTGTCTCGTGGTGATGTGATTGTATCGGTGGATGGTGTACCCATCCGTAATGCGCAAGAGTGGATGGATATGGCGGCTTTCTTGAATGAATTGTCACTTAATGATGGAAACCACAACGTGGATGTCCAAAGCGTTGGGACAGTCAGTAACAGAAAGGGGTACTGTGTTCCTAATCCTATGATGGAAGAAAGCAAACAGATGCTTATAATAGATAATCAGTCTTCATGTCCTGACGGTCTTATGTCATTTACAACTGTTCCCTGTGCTTATACAAGCATCAATATTGAGAAAACCTACTGCTTGAATGCTAAGGATGTAATCAAGCTTAATAAATGTGGTGATGGATGGCTGCCAACCATCACCAACGGCAGCAACTGCATATGTTCACAGGACGAGTCCTGCTTAAGTCCAATTCAAATTCCCGGCTTAATATGGGTTGAGGTCACTTATTCAAGGCCCTATTCTCTGGAATGCTTGCGAGTTAGAAGAAAATCTTTTGCGGACTCAAGATATTCTGATTCGATGGAATCTAAATGTGGCGGGACTTTTGTTTTTGTTGGTAACGTTATCTCCATGGCACAATCAGTCCAGTTAACTGCATATCGACCTCGTTGGCATTTCCTTTGGGTACATATCTTCCAAATGTACTTGAAAGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006355 GO:0006357 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0012505 GO:0016020 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0031090 GO:0031293 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031984 GO:0033554 GO:0033619 GO:0034976 GO:0036003 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044093 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070011 GO:0071214 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0104004 GO:0140096 GO:1900457 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:1905897 GO:1990440 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_M50

Protein Analysis

305

Amino Acids

33.78

Weight (kDa)

5.52

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310
fragaria_vesca	FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520
malus_domestica	MD10G1221200.v1.1
prunus_persica	Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1
pyrus_communis	pycom10g18680
rosa_chinensis	RchiOBHm_Chr5g0022471
rosa_laevigata	RLG00000032662
rosa_multiflora	Rmu_sc0000178.1_g000016 Rmu_sc0005639.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056580
rosa_rugosa	Rorug05G0073900 Rorug05G0073900 Rorug05G0073900 Rorug05G0074000 Rorug05G0074000
rosa_samantha	Rh5AG160800 Rh5BG159800 Rh5CG174100 Rh5DG160400
rosa_wichuraiana	Rw5G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
Acc16I	TGCGCA	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	95
AciI	CCGC	6 cut(s)	93, 143, 150, 329, 755, 795
AclI	AACGTT	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	672
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	5 cut(s)	228, 294, 416, 885, 902
AfiI	CCNNNNNNNGG	2 cut(s)	248, 373
AflII	CTTAAG	1 cut(s)	658
AgsI	TTSAA	5 cut(s)	340, 559, 671, 708, 907
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	580
AluI	AGCT	1 cut(s)	580
Alw26I	GTCTC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	630
AoxI	GGCC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	604, 624
ApoI	RAATTY	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	97, 310
AspS9I	GGNCC	1 cut(s)	711
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	215, 278, 605, 607
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	591, 636
BccI	CCATC	9 cut(s)	281, 305, 313, 353, 430, 590, 594, 620, 772
BceAI	ACGGC	1 cut(s)	637
BciT130I	CCWGG	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	658
BisI	GCNGC	3 cut(s)	330, 605, 625
BlsI	GCNGC	3 cut(s)	331, 606, 626
Bme1390I	CCNGG	2 cut(s)	39, 678
BmgT120I	GGNCC	1 cut(s)	711
BmrFI	CCNGG	2 cut(s)	39, 678
BmsI	GCATC	2 cut(s)	444, 540
BpiI	GAAGAC	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	38, 213, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 373
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	844
Bse3DI	GCAATG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	38, 213, 828
BseGI	GGATG	6 cut(s)	292, 297, 324, 382, 574, 605
BseLI	CCNNNNNNNGG	2 cut(s)	248, 373
BseMI	GCAATG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	844
BseXI	GCAGC	2 cut(s)	591, 636
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	712
BsiSI	CCGG	2 cut(s)	173, 678
BslFI	GGGAC	2 cut(s)	406, 811
BslI	CCNNNNNNNGG	2 cut(s)	248, 373
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	406, 811
BsmI	GAATGC	2 cut(s)	565, 731
BsnI	GGCC	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp19I	CCATGG	2 cut(s)	213, 828
BspACI	CCGC	6 cut(s)	93, 143, 150, 329, 755, 795
BspANI	GGCC	1 cut(s)	712
BspFNI	CGCG	1 cut(s)	95
BspTI	CTTAAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	844
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	3 cut(s)	38, 213, 828
BssNAI	GTATAC	1 cut(s)	106
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	213, 828
Bst1107I	GTATAC	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	6 cut(s)	110, 203, 397, 419, 491, 511
BstAFI	CTTAAG	1 cut(s)	658
BstAPI	GCANNNNNTGC	2 cut(s)	79, 630
BstC8I	GCNNGC	2 cut(s)	75, 731
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	2 cut(s)	213, 828
BstF5I	GGATG	6 cut(s)	292, 297, 324, 382, 574, 605
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	97, 310
BstMAI	GTCTC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 79, 169, 630
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	37, 676
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	591, 636
BstV2I	GAAGAC	1 cut(s)	468
BstXI	CCANNNNNNTGG	2 cut(s)	220, 389
BstZ17I	GTATAC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	712
BtgI	CCRYGG	2 cut(s)	213, 828
BtsCI	GGATG	6 cut(s)	292, 297, 324, 382, 574, 605
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	75, 731
CaiI	CAGNNNCTG	1 cut(s)	630
CfoI	GCGC	2 cut(s)	97, 310
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	711
Csp6I	GTAC	5 cut(s)	227, 293, 415, 884, 901
CviAII	CATG	3 cut(s)	214, 480, 829
CviQI	GTAC	5 cut(s)	227, 293, 415, 884, 901
DdeI	CTNAG	1 cut(s)	564
DraIII	CACNNNGTG	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	213, 828
Eco24I	GRGCYC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	711
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	213, 828
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	213, 828
FaeI	CATG	3 cut(s)	217, 483, 832
FalI	AAGNNNNNCTT	2 cut(s)	733, 765
FaqI	GGGAC	2 cut(s)	406, 811
FatI	CATG	3 cut(s)	213, 479, 828
FauI	CCCGC	2 cut(s)	143, 788
FauNDI	CATATG	1 cut(s)	635
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	330, 605, 625
FokI	GGATG	6 cut(s)	284, 299, 331, 389, 581, 612
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	330, 605, 625
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	2 cut(s)	96, 309
GluI	GCNGC	3 cut(s)	330, 605, 625
GsaI	CCCAGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	712
HapII	CCGG	2 cut(s)	173, 678
HhaI	GCGC	2 cut(s)	97, 310
Hin1II	CATG	3 cut(s)	217, 483, 832
Hin6I	GCGC	2 cut(s)	95, 308
HinP1I	GCGC	2 cut(s)	95, 308
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	4 cut(s)	650, 758, 773, 782
HpaI	GTTAAC	1 cut(s)	849
HpaII	CCGG	2 cut(s)	173, 678
HphI	GGTGA	4 cut(s)	215, 278, 605, 607
Hpy166II	GTNNAC	5 cut(s)	106, 227, 293, 641, 849
Hpy188I	TCNGA	1 cut(s)	772
Hpy188III	TCNNGA	4 cut(s)	337, 485, 722, 762
Hpy8I	GTNNAC	5 cut(s)	106, 227, 293, 641, 849
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	6 cut(s)	110, 203, 397, 419, 491, 511
HpyCH4IV	ACGT	3 cut(s)	236, 372, 819
HpyCH4V	TGCA	4 cut(s)	73, 131, 633, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 79, 169, 630
HpyF3I	CTNAG	1 cut(s)	564
HpySE526I	ACGT	3 cut(s)	236, 372, 819
Hsp92II	CATG	3 cut(s)	217, 483, 832
HspAI	GCGC	2 cut(s)	95, 308
KspAI	GTTAAC	1 cut(s)	849
Lsp1109I	GCAGC	2 cut(s)	591, 636
LweI	GCATC	2 cut(s)	444, 540
MaeII	ACGT	3 cut(s)	236, 372, 819
MaeIII	GTNAC	5 cut(s)	251, 348, 401, 697, 815
MboII	GAAGA	4 cut(s)	452, 468, 753, 883
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	3 cut(s)	344, 666, 672
MlyI	GAGTC	2 cut(s)	659, 752
MnlI	CCTC	2 cut(s)	688, 873
MseI	TTAA	6 cut(s)	57, 354, 582, 659, 683, 848
MspCI	CTTAAG	1 cut(s)	658
MspI	CCGG	2 cut(s)	173, 678
MspR9I	CCNGG	2 cut(s)	39, 678
Mva1269I	GAATGC	2 cut(s)	565, 731
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	50, 79, 169, 630
NciI	CCSGG	1 cut(s)	678
NcoI	CCATGG	2 cut(s)	213, 828
NdeI	CATATG	1 cut(s)	635
NlaIII	CATG	3 cut(s)	217, 483, 832
NmuCI	GTSAC	2 cut(s)	348, 697
NsbI	TGCGCA	1 cut(s)	309
PctI	GAATGC	2 cut(s)	565, 731
PfeI	GAWTC	2 cut(s)	773, 782
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	331, 606, 626
PleI	GAGTC	2 cut(s)	658, 752
PpsI	GAGTC	2 cut(s)	658, 752
PsiI	TTATAA	1 cut(s)	461
Psp1406I	AACGTT	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	711
PstNI	CAGNNNCTG	1 cut(s)	630
RsaI	GTAC	5 cut(s)	228, 294, 416, 885, 902
RsaNI	GTAC	5 cut(s)	227, 293, 415, 884, 901
SaqAI	TTAA	6 cut(s)	57, 354, 582, 659, 683, 848
SatI	GCNGC	3 cut(s)	330, 605, 625
Sau96I	GGNCC	1 cut(s)	711
SchI	GAGTC	2 cut(s)	659, 752
ScrFI	CCNGG	2 cut(s)	39, 678
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	232, 239, 375, 551, 582, 699, 822, 865
SfaNI	GCATC	2 cut(s)	444, 540
SmlI	CTYRAG	2 cut(s)	658, 760
SmoI	CTYRAG	2 cut(s)	658, 760
Sse9I	AATT	3 cut(s)	344, 666, 672
SsiI	CCGC	6 cut(s)	93, 143, 150, 329, 755, 795
SspI	AATATT	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	37, 676
StyI	CCWWGG	2 cut(s)	213, 828
TaaI	ACNGT	6 cut(s)	110, 203, 397, 419, 491, 511
TaiI	ACGT	3 cut(s)	239, 375, 822
TaqI	TCGA	3 cut(s)	100, 776, 859
TasI	AATT	3 cut(s)	344, 666, 672
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	773, 782
Tru1I	TTAA	6 cut(s)	57, 354, 582, 659, 683, 848
Tru9I	TTAA	6 cut(s)	57, 354, 582, 659, 683, 848
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	2 cut(s)	348, 697
TseI	GCWGC	2 cut(s)	604, 624
Tsp45I	GTSAC	2 cut(s)	348, 697
TspDTI	ATGAA	2 cut(s)	357, 468
TspGWI	ACGGA	2 cut(s)	177, 290
TspRI	CASTG	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	658
XapI	RAATTY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.