Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001897

Physical Location & Seq

Genomic Coordinates Reverse (-)

21962908 .. 21964343

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18680.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCATTTGGTGCTTTTTGGGTTTTTGTTTTTGATTATTCTGAAGCAAAACGTAGGCTTGATTGCAAGCAGTGAGTGCCTGCAAATGGAGTATGTTGCTGTGTTCGTTGCGTTTCTGTTTCCCGGTGCTCTGGTGGCTTTTGATTCGGAGTCTCTGCAACAGTTGTCTTGTTTTGCTGCTCTTCGGATATATTGTGCTGGAATTTGGCACAATGCAGTGTGTTGTGTGGTTTGTGGGTTCGCCTTACTACTCCTGCCCTTCATCTTGTTTCCGTTTTACATACATGGTGGCAGCCTCGTGGTTTTGGGTGTACCTTCTACATCGCCTTTGTCCGGTTACTTGTCACCTGGTGATGTGATTGTGTCGGTGGATGGTGTACCTATCCATAATGTCCAAGAATGGATGGAGATGACATCTCTGATAAATCAATTGGCACTTGGAGATAGAAACCATTCCATAGATGTCCCAGGCTTTGGGACAGCCAATAGAAGGAAGGGGTACTGTGTGCCTAATTCTATGATGGAAGAAAGCAAGCAGATTATCATAGCTGATAACCAGTCTTCTTGTCCCAATGATCTTACTGCATTTACAACTGTTCCCTGTGCTTATGCAAGCTTGTTAGGTGATGATCATCCAATTAGTATTGAGAAAGCCCACTGCTTGAATGCCAAGGATGTGATCAAACTTAATAAGTGCGGTGACGGATGGGCGGCGATTATAACAAATGGCAGCAACTGCATATGTTCAGAGGACGAGTCCTGCTCAAGTCCAATTCCAATTCCAGGGTTGGTATGGGTTGAGGTCACATATTCAAGGCCCTATTCTCTGGAATGCTTGCGAGTTAGAAGAAAATCTTTTGTGGATTCAAGAACATCTGAAGGCATGGAATCTAACTGTGGCGGGACTTTTGTGTTTGTTGGGGACATTATCTTCATGGCACGCTCAGTTCAGTTAACTGCATATCGACCTCGCTGGGCATTTCCCTTGGTTACATATCTTCCAAATGTACTAGAGAGGATTTTGATATGCACATTCCAAGTCTCTCTAACACTTGCCCTTCTCAACAGTTTGCCCGTAAGTTTTTTATTTATTTTATTTATTCTACTATTGTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006355 GO:0006357 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0012505 GO:0016020 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0031090 GO:0031293 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031984 GO:0033554 GO:0033619 GO:0034976 GO:0036003 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043618 GO:0043620 GO:0044093 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070011 GO:0071214 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0104004 GO:0140096 GO:1900457 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:1905897 GO:1990440 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Peptidase_M50

Protein Analysis

373

Amino Acids

40.84

Weight (kDa)

5.35

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310 AT4G20310
fragaria_vesca	FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520 FvH4_3g13520
malus_domestica	MD10G1221200.v1.1
prunus_persica	Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1 Prupe.4G123400_v2.0.a1
pyrus_communis	pycom10g18680
rosa_chinensis	RchiOBHm_Chr5g0022471
rosa_laevigata	RLG00000032662
rosa_multiflora	Rmu_sc0000178.1_g000016 Rmu_sc0005639.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056580
rosa_rugosa	Rorug05G0073900 Rorug05G0073900 Rorug05G0073900 Rorug05G0074000 Rorug05G0074000
rosa_samantha	Rh5AG160800 Rh5BG159800 Rh5CG174100 Rh5DG160400
rosa_wichuraiana	Rw5G014340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AccB7I	CCANNNNNTGG	1 cut(s)	473
AciI	CCGC	3 cut(s)	696, 710, 900
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	2 cut(s)	62, 897
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	4 cut(s)	312, 378, 500, 1008
AfiI	CCNNNNNNNGG	5 cut(s)	85, 332, 473, 489, 782
AgsI	TTSAA	3 cut(s)	664, 813, 867
AjnI	CCWGG	3 cut(s)	346, 466, 781
AluBI	AGCT	2 cut(s)	548, 615
AluI	AGCT	2 cut(s)	548, 615
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	2 cut(s)	156, 1045
AlwNI	CAGNNNCTG	1 cut(s)	735
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	3 cut(s)	176, 291, 729
ApoI	RAATTY	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	816
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	4 cut(s)	336, 362, 635, 710
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	163, 303, 741
BccI	CCATC	4 cut(s)	365, 397, 514, 699
BciT130I	CCWGG	3 cut(s)	348, 468, 783
BclI	TGATCA	2 cut(s)	628, 678
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	156, 1045
BfaI	CTAG	1 cut(s)	1010
BisI	GCNGC	4 cut(s)	177, 292, 711, 730
BlsI	GCNGC	4 cut(s)	178, 293, 712, 731
Bme1390I	CCNGG	4 cut(s)	123, 348, 468, 783
BmgT120I	GGNCC	1 cut(s)	816
BmrFI	CCNGG	4 cut(s)	123, 348, 468, 783
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpuEI	CTTGAG	1 cut(s)	748
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	4 cut(s)	466, 669, 782, 984
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 332, 473, 489, 782
Bse1I	ACTGG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	3 cut(s)	348, 468, 783
BseDI	CCNNGG	4 cut(s)	466, 669, 782, 984
BseGI	GGATG	5 cut(s)	376, 408, 631, 679, 710
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	5 cut(s)	85, 332, 473, 489, 782
BseMII	CTCAG	1 cut(s)	957
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	163, 303, 741
BseYI	CCCAGC	1 cut(s)	972
BshFI	GGCC	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	123, 333
BslFI	GGGAC	5 cut(s)	449, 490, 552, 916, 935
BslI	CCNNNNNNNGG	5 cut(s)	85, 332, 473, 489, 782
BsmAI	GTCTC	2 cut(s)	156, 1045
BsmFI	GGGAC	5 cut(s)	449, 490, 552, 916, 935
BsmI	GAATGC	2 cut(s)	670, 836
BsnI	GGCC	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	574, 628, 678
BspACI	CCGC	3 cut(s)	696, 710, 900
BspANI	GGCC	1 cut(s)	817
BspCNI	CTCAG	1 cut(s)	956
BspQI	GCTCTTC	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	4 cut(s)	466, 669, 782, 984
BssMI	GATC	3 cut(s)	574, 628, 678
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	2 cut(s)	669, 984
Bst2BI	CACGAG	1 cut(s)	296
Bst2UI	CCWGG	3 cut(s)	348, 468, 783
Bst4CI	ACNGT	5 cut(s)	162, 503, 595, 896, 1067
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	3 cut(s)	10, 75, 735
BstC8I	GCNNGC	6 cut(s)	67, 80, 533, 613, 836, 940
BstDEI	CTNAG	1 cut(s)	943
BstF5I	GGATG	5 cut(s)	376, 408, 631, 679, 710
BstKTI	GATC	3 cut(s)	577, 631, 681
BstMAI	GTCTC	2 cut(s)	156, 1045
BstMBI	GATC	3 cut(s)	574, 628, 678
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 75, 134, 735
BstNI	CCWGG	3 cut(s)	348, 468, 783
BstSCI	CCNGG	4 cut(s)	121, 346, 466, 781
BstV1I	GCAGC	3 cut(s)	163, 303, 741
BstV2I	GAAGAC	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	817
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	5 cut(s)	376, 408, 631, 679, 710
BtsI	GCAGTG	3 cut(s)	76, 222, 655
BtsIMutI	CAGTG	3 cut(s)	76, 222, 655
Cac8I	GCNNGC	6 cut(s)	67, 80, 533, 613, 836, 940
CaiI	CAGNNNCTG	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	816
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	4 cut(s)	311, 377, 499, 1007
CviAII	CATG	3 cut(s)	284, 883, 934
CviJI	RGCY	9 cut(s)	57, 137, 294, 471, 482, 548, 615, 653, 817
CviKI_1	RGCY	9 cut(s)	57, 137, 294, 471, 482, 548, 615, 653, 817
CviQI	GTAC	4 cut(s)	311, 377, 499, 1007
DdeI	CTNAG	1 cut(s)	943
DpnI	GATC	3 cut(s)	576, 630, 680
DpnII	GATC	3 cut(s)	574, 628, 678
DraIII	CACNNNGTG	1 cut(s)	350
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	669, 984
Eco57I	CTGAAG	2 cut(s)	62, 897
EcoO109I	RGGNCCY	1 cut(s)	816
EcoRII	CCWGG	3 cut(s)	346, 466, 781
EcoT14I	CCWWGG	2 cut(s)	669, 984
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	669, 984
FaeI	CATG	3 cut(s)	287, 886, 937
FalI	AAGNNNNNCTT	2 cut(s)	838, 870
FaqI	GGGAC	5 cut(s)	449, 490, 552, 916, 935
FatI	CATG	3 cut(s)	283, 882, 933
FauI	CCCGC	1 cut(s)	893
FauNDI	CATATG	1 cut(s)	740
FbaI	TGATCA	2 cut(s)	628, 678
Fnu4HI	GCNGC	4 cut(s)	177, 292, 711, 730
FokI	GGATG	5 cut(s)	383, 415, 618, 686, 717
Fsp4HI	GCNGC	4 cut(s)	177, 292, 711, 730
FspBI	CTAG	1 cut(s)	1010
GluI	GCNGC	4 cut(s)	177, 292, 711, 730
GsaI	CCCAGC	1 cut(s)	976
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	2 cut(s)	123, 333
Hin1II	CATG	3 cut(s)	287, 886, 937
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	5 cut(s)	143, 149, 755, 863, 887
HpaI	GTTAAC	1 cut(s)	954
HpaII	CCGG	2 cut(s)	123, 333
HphI	GGTGA	4 cut(s)	336, 362, 635, 710
Hpy166II	GTNNAC	3 cut(s)	311, 377, 954
Hpy188I	TCNGA	6 cut(s)	42, 148, 186, 420, 748, 877
Hpy188III	TCNNGA	2 cut(s)	827, 867
Hpy8I	GTNNAC	3 cut(s)	311, 377, 954
HpyAV	CCTTC	6 cut(s)	268, 324, 483, 487, 872, 1067
HpyCH4III	ACNGT	5 cut(s)	162, 503, 595, 896, 1067
HpyCH4IV	ACGT	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 75, 134, 735
HpyF3I	CTNAG	1 cut(s)	943
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	287, 886, 937
Ksp22I	TGATCA	2 cut(s)	628, 678
KspAI	GTTAAC	1 cut(s)	954
Kzo9I	GATC	3 cut(s)	574, 628, 678
LguI	GCTCTTC	1 cut(s)	186
Lsp1109I	GCAGC	3 cut(s)	163, 303, 741
MabI	ACCWGGT	1 cut(s)	346
MaeI	CTAG	1 cut(s)	1010
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	5 cut(s)	335, 342, 698, 802, 988
MalI	GATC	3 cut(s)	576, 630, 680
MboI	GATC	3 cut(s)	574, 628, 678
MboII	GAAGA	6 cut(s)	173, 536, 552, 858, 922, 989
MfeI	CAATTG	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	6 cut(s)	201, 428, 511, 636, 771, 777
MlyI	GAGTC	2 cut(s)	158, 764
MnlI	CCTC	5 cut(s)	305, 742, 793, 978, 1008
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	3 cut(s)	687, 953, 1117
MspI	CCGG	2 cut(s)	123, 333
MspR9I	CCNGG	4 cut(s)	123, 348, 468, 783
MunI	CAATTG	1 cut(s)	428
Mva1269I	GAATGC	2 cut(s)	670, 836
MvaI	CCWGG	3 cut(s)	348, 468, 783
MwoI	GCNNNNNNNGC	4 cut(s)	10, 75, 134, 735
NciI	CCSGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	740
NdeII	GATC	3 cut(s)	574, 628, 678
NlaIII	CATG	3 cut(s)	287, 886, 937
NmuCI	GTSAC	3 cut(s)	342, 698, 802
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	2 cut(s)	670, 836
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	143, 863, 887
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	178, 293, 712, 731
PleI	GAGTC	2 cut(s)	157, 763
PpsI	GAGTC	2 cut(s)	157, 763
PsiI	TTATAA	1 cut(s)	719
Psp6I	CCWGG	3 cut(s)	346, 466, 781
PspFI	CCCAGC	1 cut(s)	972
PspGI	CCWGG	3 cut(s)	346, 466, 781
PspPI	GGNCC	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	735
RsaI	GTAC	4 cut(s)	312, 378, 500, 1008
RsaNI	GTAC	4 cut(s)	311, 377, 499, 1007
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	687, 953, 1117
SatI	GCNGC	4 cut(s)	177, 292, 711, 730
Sau3AI	GATC	3 cut(s)	574, 628, 678
Sau96I	GGNCC	1 cut(s)	816
SchI	GAGTC	2 cut(s)	158, 764
ScrFI	CCNGG	4 cut(s)	123, 348, 468, 783
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	9 cut(s)	54, 316, 349, 382, 550, 617, 625, 804, 970
SexAI	ACCWGGT	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
Sse9I	AATT	6 cut(s)	201, 428, 511, 636, 771, 777
SsiI	CCGC	3 cut(s)	696, 710, 900
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	4 cut(s)	121, 346, 466, 781
StyI	CCWWGG	2 cut(s)	669, 984
TaaI	ACNGT	5 cut(s)	162, 503, 595, 896, 1067
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	964
TasI	AATT	6 cut(s)	201, 428, 511, 636, 771, 777
TatI	WGTACW	1 cut(s)	1006
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	143, 863, 887
Tru1I	TTAA	3 cut(s)	687, 953, 1117
Tru9I	TTAA	3 cut(s)	687, 953, 1117
TscAI	CASTG	3 cut(s)	76, 222, 662
TseFI	GTSAC	3 cut(s)	342, 698, 802
TseI	GCWGC	3 cut(s)	176, 291, 729
Tsp45I	GTSAC	3 cut(s)	342, 698, 802
TspDTI	ATGAA	2 cut(s)	250, 922
TspGWI	ACGGA	2 cut(s)	261, 717
TspRI	CASTG	3 cut(s)	76, 222, 662
Van91I	CCANNNNNTGG	1 cut(s)	473
XapI	RAATTY	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	1010
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.