Rh5BG159800

Membrane-bound transcription factor site-2

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
16521824 .. 16525164
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG159800.1

Sequence Viewer

Length: 1437 bp
ATGGAAGGAAGACGATTCAGAAGGTTCGGGATGCCAAGACGAAACCCACAAACCCACTCTCCCAATCTCCTCCCTACTCACTCCCACACTCCCTCCGCCTCCACCATATCCTGCTGCTACTGCGACTACAAATTCTGGGCCTTCAACGACCCTCTTTTCCATTTGGGCCGAAACCACTCCCTCCCTCTCAAAGCATGGTTCTCCGTCGGCGTCGGCTTCGGCCTCAGCGCCCTCCTCGCCGTCTCCCTCCTCCTCATCTTTGAACTGGGCCGTGCTCTCACTCTCTTCCCTAACCACCTCTTCTTGGATACCTTCCTCTCATCTATCTCCTCATGCTTTGCCAACCCATTGAACGACGCCGTCTATGTAGTGGTTGCGACCCTCGTTTCGGTTTCGGTGCACGAGTTCGGGCACGCCCTCGCTGCTGCCAGTGAGGGGATACGTATGGAGTATGTGGCTGTGTTTGTTGCGTGTATCTTTCCTGGGGCTCTGGTGGCTTTTAATGATGATGTAATGCAAGCATTGCCTTGTTTTACCGCGCTTCGAGTATATTGTGCTGGGATTTGGCACAATGCAGTGTGCTGTGCGGTTTGCGGGTTGGCATTGCTACTCCTGCCGGTGTTGTTGTTTCCGTTTTACATACACGGTGAAAGCCCCATGGTGTTGGGTGTACCTTCTACGTCGCCTTTGTCTGGTTACTTGTCCCGTGGTGATGTGATTGTATCGGTGGATGGTGTACCCATCCGTAATGCGCAAGAGTGGATGGATATGGCGGCTTTCTTGAATGAATTGTCACTTAATGATGGAAACCACAACATGGATGTCCAAAGCGTTGGGACAGTCAGTAACAGAAAGGGGTACTGTGTTCCTAATCCTATGATGGAAGAAAGCAAACAGATGCTTATATTAGATAATCAGTCTTCATGTCCTGATGGTCTTACGTCATTTACAACTGTTCCCTGTGCTTATATAAACATCAATATTGAGAAAACCTACTGCTTGAATGCTAAGGATGTAGTCAAGCTTAATAAATGTGGTGATGGATGGCCGCCGACCATAACCAATGGCAGCAACTGCATATGTTCGCAGGACGAGTCCTGCTTAAGTCCAATTCAAATTCCCGGCTTAATATGGGTTGAGGTCACTTATTCAAGGCCCTATTCTCTGGAATGCTTGCGAGTTAGAAGAAAATCTTTTGCGGACTCAAGAAATTCTGATTCAATGGAATCTAACTGTGGCGGGACTTTTGTTTTTGTTGGTAACGTTATCTCCATGGCACGCTCAGTCCAGTTAACTGCATATCGACCTCGTTGGGCATTTCCTTTGGGTACATATCTTCCAAATGTACTTGAAAGGATTTTGAGATGCACATTCCAGGTCTCTCTAACACTAGCTCTTCTCAACAGTTTGCCGGTAAGTGTCTTGATAAAGAGTTAA

Protein Analysis

478

Amino Acids

52.53

Weight (kDa)

6.8

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50 PF02163 123 - 475 2.2e-13 Peptidase family M50
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 753
AccB7I CCANNNNNTGG 1 cut(s) 817
AccII CGCG 1 cut(s) 539
AciI CCGC 8 cut(s) 96, 537, 587, 594, 773, 1049, 1199, 1239
AclI AACGTT 1 cut(s) 1263
AcoI YGGCCR 1 cut(s) 1046
AcsI RAATTY 3 cut(s) 131, 1116, 1210
AcyI GRCGYC 2 cut(s) 210, 357
AfaI GTAC 5 cut(s) 672, 738, 860, 1330, 1347
AfiI CCNNNNNNNGG 5 cut(s) 304, 388, 435, 692, 817
AflII CTTAAG 1 cut(s) 1102
AgsI TTSAA 9 cut(s) 145, 263, 352, 784, 1003, 1115, 1152, 1221, 1352
AjnI CCWGG 2 cut(s) 481, 1374
AluBI AGCT 2 cut(s) 1024, 1394
AluI AGCT 2 cut(s) 1024, 1394
Alw21I GWGCWC 2 cut(s) 277, 402
Alw26I GTCTC 2 cut(s) 247, 1384
Alw44I GTGCAC 1 cut(s) 398
AlwNI CAGNNNCTG 1 cut(s) 1074
AoxI GGCC 6 cut(s) 138, 166, 220, 268, 1046, 1154
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 4 cut(s) 114, 422, 425, 1068
ApoI RAATTY 3 cut(s) 131, 1116, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 370, 402
AspLEI GCGC 3 cut(s) 230, 541, 754
AspS9I GGNCC 4 cut(s) 138, 166, 268, 1155
AsuC2I CCSGG 1 cut(s) 1122
AsuHPI GGTGA 3 cut(s) 659, 722, 1049
BaeGI GKGCMC 2 cut(s) 402, 414
BanII GRGCYC 1 cut(s) 490
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 2 cut(s) 16, 912
Bbv12I GWGCWC 2 cut(s) 277, 402
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 4 cut(s) 101, 409, 412, 1080
BccI CCATC 8 cut(s) 725, 749, 757, 797, 874, 926, 1034, 1038
BceAI ACGGC 3 cut(s) 224, 255, 344
BciT130I CCWGG 2 cut(s) 483, 1376
BciVI GTATCC 2 cut(s) 301, 432
BcnI CCSGG 1 cut(s) 1122
BcoDI GTCTC 2 cut(s) 247, 1384
BfaI CTAG 1 cut(s) 1391
BfoI RGCGCY 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 1102
BfuI GTATCC 2 cut(s) 301, 432
BisI GCNGC 6 cut(s) 115, 423, 426, 774, 1049, 1069
BlsI GCNGC 6 cut(s) 116, 424, 427, 775, 1050, 1070
Bme1390I CCNGG 3 cut(s) 483, 1122, 1376
BmgT120I GGNCC 4 cut(s) 138, 166, 268, 1155
BmrFI CCNGG 3 cut(s) 483, 1122, 1376
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 3 cut(s) 21, 888, 1355
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 16, 912
Bpu10I CCTNAGC 2 cut(s) 224, 1008
BpuEI CTTGAG 1 cut(s) 1189
BpuMI CCSGG 1 cut(s) 1122
BsaAI YACGTR 1 cut(s) 443
BsaHI GRCGYC 2 cut(s) 210, 357
BsaI GGTCTC 1 cut(s) 1384
BsaJI CCNNGG 4 cut(s) 482, 657, 706, 1272
BsaXI ACNNNNNCTCC 6 cut(s) 43, 73, 77, 107, 1253, 1283
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 388, 435, 692, 817
Bse118I RCCGGY 2 cut(s) 616, 1411
Bse1I ACTGG 3 cut(s) 270, 429, 1288
Bse3DI GCAATG 2 cut(s) 521, 602
BseBI CCWGG 2 cut(s) 483, 1376
BseDI CCNNGG 4 cut(s) 482, 657, 706, 1272
BseGI GGATG 7 cut(s) 36, 736, 741, 768, 826, 1018, 1049
BseLI CCNNNNNNNGG 5 cut(s) 304, 388, 435, 692, 817
BseMI GCAATG 2 cut(s) 521, 602
BseMII CTCAG 2 cut(s) 238, 1296
BseNI ACTGG 3 cut(s) 270, 429, 1288
BseRI GAGGAG 5 cut(s) 59, 224, 239, 242, 319
BseSI GKGCMC 2 cut(s) 402, 414
BseXI GCAGC 4 cut(s) 101, 409, 412, 1080
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 539
BshFI GGCC 6 cut(s) 140, 168, 222, 270, 1048, 1156
BsiHKAI GWGCWC 2 cut(s) 277, 402
BsiSI CCGG 3 cut(s) 617, 1122, 1412
BslFI GGGAC 3 cut(s) 688, 850, 1255
BslI CCNNNNNNNGG 5 cut(s) 304, 388, 435, 692, 817
BsmAI GTCTC 2 cut(s) 247, 1384
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 3 cut(s) 688, 850, 1255
BsmI GAATGC 2 cut(s) 1009, 1175
BsnI GGCC 6 cut(s) 140, 168, 222, 270, 1048, 1156
Bso31I GGTCTC 1 cut(s) 1384
Bsp1286I GDGCHC 4 cut(s) 277, 402, 414, 490
Bsp19I CCATGG 2 cut(s) 657, 1272
BspACI CCGC 8 cut(s) 96, 537, 587, 594, 773, 1049, 1199, 1239
BspANI GGCC 6 cut(s) 140, 168, 222, 270, 1048, 1156
BspCNI CTCAG 2 cut(s) 237, 1295
BspFNI CGCG 1 cut(s) 539
BspQI GCTCTTC 1 cut(s) 1401
BspTI CTTAAG 1 cut(s) 1102
BspTNI GGTCTC 1 cut(s) 1384
BsrDI GCAATG 2 cut(s) 521, 602
BsrFI RCCGGY 2 cut(s) 616, 1411
BsrI ACTGG 3 cut(s) 270, 429, 1288
BssAI RCCGGY 2 cut(s) 616, 1411
BssECI CCNNGG 4 cut(s) 482, 657, 706, 1272
BssNI GRCGYC 2 cut(s) 210, 357
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 657, 1272
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 483, 1376
Bst4CI ACNGT 6 cut(s) 647, 841, 863, 955, 1235, 1406
Bst6I CTCTTC 3 cut(s) 290, 305, 1401
BstACI GRCGYC 2 cut(s) 210, 357
BstAFI CTTAAG 1 cut(s) 1102
BstAPI GCANNNNNTGC 2 cut(s) 523, 1074
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 4 cut(s) 414, 519, 1175, 1279
BstDEI CTNAG 3 cut(s) 224, 1008, 1282
BstDSI CCRYGG 3 cut(s) 657, 706, 1272
BstF5I GGATG 7 cut(s) 36, 736, 741, 768, 826, 1018, 1049
BstFNI CGCG 1 cut(s) 539
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 3 cut(s) 230, 541, 754
BstMAI GTCTC 2 cut(s) 247, 1384
BstMWI GCNNNNNNNGC 7 cut(s) 120, 236, 422, 494, 523, 613, 1074
BstNI CCWGG 2 cut(s) 483, 1376
BstSCI CCNGG 3 cut(s) 481, 1120, 1374
BstSLI GKGCMC 2 cut(s) 402, 414
BstSNI TACGTA 1 cut(s) 443
BstUI CGCG 1 cut(s) 539
BstV1I GCAGC 4 cut(s) 101, 409, 412, 1080
BstV2I GAAGAC 2 cut(s) 16, 912
BstXI CCANNNNNNTGG 2 cut(s) 664, 833
BsuI GTATCC 2 cut(s) 301, 432
BsuRI GGCC 6 cut(s) 140, 168, 222, 270, 1048, 1156
BtgI CCRYGG 3 cut(s) 657, 706, 1272
BtsCI GGATG 7 cut(s) 36, 736, 741, 768, 826, 1018, 1049
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 436, 582
Cac8I GCNNGC 4 cut(s) 414, 519, 1175, 1279
CaiI CAGNNNCTG 1 cut(s) 1074
CfoI GCGC 3 cut(s) 230, 541, 754
Cfr10I RCCGGY 2 cut(s) 616, 1411
Cfr13I GGNCC 4 cut(s) 138, 166, 268, 1155
CseI GACGC 2 cut(s) 199, 365
Csp6I GTAC 5 cut(s) 671, 737, 859, 1329, 1346
CviAII CATG 6 cut(s) 195, 333, 658, 817, 924, 1273
CviQI GTAC 5 cut(s) 671, 737, 859, 1329, 1346
DdeI CTNAG 3 cut(s) 224, 1008, 1282
EaeI YGGCCR 1 cut(s) 1046
Eam1104I CTCTTC 3 cut(s) 290, 305, 1401
EarI CTCTTC 3 cut(s) 290, 305, 1401
EciI GGCGGA 1 cut(s) 85
Eco105I TACGTA 1 cut(s) 443
Eco130I CCWWGG 2 cut(s) 657, 1272
Eco24I GRGCYC 1 cut(s) 490
Eco31I GGTCTC 1 cut(s) 1384
EcoO109I RGGNCCY 1 cut(s) 1155
EcoRII CCWGG 2 cut(s) 481, 1374
EcoT14I CCWWGG 2 cut(s) 657, 1272
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 2 cut(s) 657, 1272
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 6 cut(s) 198, 336, 661, 820, 927, 1276
FalI AAGNNNNNCTT 2 cut(s) 1177, 1209
FaqI GGGAC 3 cut(s) 688, 850, 1255
FatI CATG 6 cut(s) 194, 332, 657, 816, 923, 1272
FauI CCCGC 2 cut(s) 587, 1232
FauNDI CATATG 1 cut(s) 1079
Fnu4HI GCNGC 6 cut(s) 115, 423, 426, 774, 1049, 1069
FokI GGATG 7 cut(s) 43, 728, 743, 775, 833, 1025, 1056
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 6 cut(s) 115, 423, 426, 774, 1049, 1069
FspBI CTAG 1 cut(s) 1391
FspI TGCGCA 1 cut(s) 753
GlaI GCGC 3 cut(s) 229, 540, 753
GluI GCNGC 6 cut(s) 115, 423, 426, 774, 1049, 1069
GsaI CCCAGC 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 6 cut(s) 140, 168, 222, 270, 1048, 1156
HapII CCGG 3 cut(s) 617, 1122, 1412
HgaI GACGC 2 cut(s) 199, 365
HhaI GCGC 3 cut(s) 230, 541, 754
Hin1I GRCGYC 2 cut(s) 210, 357
Hin1II CATG 6 cut(s) 198, 336, 661, 820, 927, 1276
Hin6I GCGC 3 cut(s) 228, 539, 752
HinP1I GCGC 3 cut(s) 228, 539, 752
HincII GTYRAC 1 cut(s) 1293
HindII GTYRAC 1 cut(s) 1293
HindIII AAGCTT 1 cut(s) 1022
HinfI GANTC 5 cut(s) 15, 1094, 1202, 1217, 1226
HpaI GTTAAC 1 cut(s) 1293
HpaII CCGG 3 cut(s) 617, 1122, 1412
HphI GGTGA 3 cut(s) 659, 722, 1049
Hpy166II GTNNAC 4 cut(s) 400, 671, 737, 1293
Hpy188I TCNGA 2 cut(s) 20, 1216
Hpy188III TCNNGA 6 cut(s) 28, 781, 929, 1166, 1206, 1423
Hpy8I GTNNAC 4 cut(s) 400, 671, 737, 1293
Hpy99I CGWCG 4 cut(s) 209, 215, 359, 685
HpyAV CCTTC 4 cut(s) 15, 151, 322, 684
HpyCH4III ACNGT 6 cut(s) 647, 841, 863, 955, 1235, 1406
HpyCH4IV ACGT 4 cut(s) 442, 680, 941, 1263
HpyCH4V TGCA 6 cut(s) 400, 517, 575, 1077, 1298, 1368
HpyF10VI GCNNNNNNNGC 7 cut(s) 120, 236, 422, 494, 523, 613, 1074
HpyF3I CTNAG 3 cut(s) 224, 1008, 1282
HpySE526I ACGT 4 cut(s) 442, 680, 941, 1263
Hsp92I GRCGYC 2 cut(s) 210, 357
Hsp92II CATG 6 cut(s) 198, 336, 661, 820, 927, 1276
HspAI GCGC 3 cut(s) 228, 539, 752
KspAI GTTAAC 1 cut(s) 1293
LguI GCTCTTC 1 cut(s) 1401
Lsp1109I GCAGC 4 cut(s) 101, 409, 412, 1080
LweI GCATC 3 cut(s) 21, 888, 1355
MaeI CTAG 1 cut(s) 1391
MaeII ACGT 4 cut(s) 442, 680, 941, 1263
MaeIII GTNAC 5 cut(s) 695, 792, 845, 1141, 1259
MboII GAAGA 8 cut(s) 21, 277, 292, 896, 912, 1197, 1328, 1388
MhlI GDGCHC 4 cut(s) 277, 402, 414, 490
MluCI AATT 5 cut(s) 131, 788, 1110, 1116, 1210
MlyI GAGTC 2 cut(s) 1103, 1196
MseI TTAA 7 cut(s) 501, 798, 1026, 1103, 1127, 1292, 1435
MspCI CTTAAG 1 cut(s) 1102
MspI CCGG 3 cut(s) 617, 1122, 1412
MspR9I CCNGG 3 cut(s) 483, 1122, 1376
Mva1269I GAATGC 2 cut(s) 1009, 1175
MvaI CCWGG 2 cut(s) 483, 1376
MvnI CGCG 1 cut(s) 539
MwoI GCNNNNNNNGC 7 cut(s) 120, 236, 422, 494, 523, 613, 1074
NciI CCSGG 1 cut(s) 1122
NcoI CCATGG 2 cut(s) 657, 1272
NdeI CATATG 1 cut(s) 1079
NlaIII CATG 6 cut(s) 198, 336, 661, 820, 927, 1276
NmuCI GTSAC 2 cut(s) 792, 1141
NsbI TGCGCA 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 1401
PctI GAATGC 2 cut(s) 1009, 1175
PfeI GAWTC 3 cut(s) 15, 1217, 1226
PflFI GACNNNGTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 817
PkrI GCNGC 6 cut(s) 116, 424, 427, 775, 1050, 1070
PleI GAGTC 2 cut(s) 1102, 1196
PpsI GAGTC 2 cut(s) 1102, 1196
Ppu21I YACGTR 1 cut(s) 443
Psp1406I AACGTT 1 cut(s) 1263
Psp6I CCWGG 2 cut(s) 481, 1374
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 481, 1374
PspPI GGNCC 4 cut(s) 138, 166, 268, 1155
PstNI CAGNNNCTG 1 cut(s) 1074
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 5 cut(s) 672, 738, 860, 1330, 1347
RsaNI GTAC 5 cut(s) 671, 737, 859, 1329, 1346
SapI GCTCTTC 1 cut(s) 1401
SaqAI TTAA 7 cut(s) 501, 798, 1026, 1103, 1127, 1292, 1435
SatI GCNGC 6 cut(s) 115, 423, 426, 774, 1049, 1069
Sau96I GGNCC 4 cut(s) 138, 166, 268, 1155
SchI GAGTC 2 cut(s) 1103, 1196
ScrFI CCNGG 3 cut(s) 483, 1122, 1376
SduI GDGCHC 4 cut(s) 277, 402, 414, 490
SfaNI GCATC 3 cut(s) 21, 888, 1355
SmlI CTYRAG 2 cut(s) 1102, 1204
SmoI CTYRAG 2 cut(s) 1102, 1204
SnaBI TACGTA 1 cut(s) 443
Sse9I AATT 5 cut(s) 131, 788, 1110, 1116, 1210
SsiI CCGC 8 cut(s) 96, 537, 587, 594, 773, 1049, 1199, 1239
SspI AATATT 1 cut(s) 982
SspMI CTAG 1 cut(s) 1391
StyD4I CCNGG 3 cut(s) 481, 1120, 1374
StyI CCWWGG 2 cut(s) 657, 1272
TaaI ACNGT 6 cut(s) 647, 841, 863, 955, 1235, 1406
TaiI ACGT 4 cut(s) 445, 683, 944, 1266
TaqI TCGA 2 cut(s) 544, 1303
TasI AATT 5 cut(s) 131, 788, 1110, 1116, 1210
TatI WGTACW 1 cut(s) 1345
TauI GCSGC 2 cut(s) 776, 1051
TfiI GAWTC 3 cut(s) 15, 1217, 1226
Tru1I TTAA 7 cut(s) 501, 798, 1026, 1103, 1127, 1292, 1435
Tru9I TTAA 7 cut(s) 501, 798, 1026, 1103, 1127, 1292, 1435
TscAI CASTG 2 cut(s) 436, 582
TseFI GTSAC 2 cut(s) 792, 1141
TseI GCWGC 4 cut(s) 114, 422, 425, 1068
Tsp45I GTSAC 2 cut(s) 792, 1141
TspDTI ATGAA 2 cut(s) 801, 912
TspGWI ACGGA 3 cut(s) 193, 621, 734
TspRI CASTG 2 cut(s) 436, 582
Tth111I GACNNNGTC 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 817
Vha464I CTTAAG 1 cut(s) 1102
VneI GTGCAC 1 cut(s) 398
XapI RAATTY 3 cut(s) 131, 1116, 1210
XspI CTAG 1 cut(s) 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.