AT4G22160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017934
Physical Location & Seq
Forward (+)
11733032 .. 11734146
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22160.2

Sequence Viewer

Length: 429 bp
ATGGGCAAGTCGGCAAGACTTCGCCGGAGCCAGACCTCATCGCCGGAGAATGTCTTGTTGGGTAAAGATAGCTCCGATGATCCTTACAGATCCGACTCAGAGACTGAATCAAACTCGAGCTCCGGGACCGAGTCGAACATGAGCTCTGACTCTACAACTTCGGCAGGAGTGTCGGCGATGATACGAGTCTTGTCTGATTCTCTGCTTCGAACGGAACTCGCGGAGATGGAGATGATCAAGGCTCGTGAAGCAGCGAGGTTGGAAGCTGAGAAGAGAAGGTTGGAAATGGAAGTCGACTTGACTCAGATGGTGCTTCAGACTCATTTGCAAGCGATGTCGTCGTTACCCGTCGGAGAACATAAGATTTATCAGGCACAGAGGAAGAGGAAGAGATCAGACGTTGAAGAACTCGAGTCCTCTACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

5.52

Isoelectric Point (pI)

77.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22160 AT4G22160
fragaria_vesca FvH4_5g10500
malus_domestica MD10G1326900.v1.1
prunus_persica Prupe.4G015100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002091
rosa_laevigata RLG00000030993
rosa_multiflora Rmu_co8270171.1_g000001
rosa_rugosa Rorug04G0394400
rosa_samantha Rh5BG019200
rosa_wichuraiana Rw5G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 221
AciI CCGC 1 cut(s) 221
AclWI GGATC 2 cut(s) 74, 84
AcuI CTGAAG 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 423
AgsI TTSAA 1 cut(s) 404
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 73, 263, 295
AluBI AGCT 4 cut(s) 72, 120, 144, 266
AluI AGCT 4 cut(s) 72, 120, 144, 266
Alw21I GWGCWC 2 cut(s) 122, 146
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 74, 84
AlwNI CAGNNNCTG 1 cut(s) 104
Ama87I CYCGRG 2 cut(s) 115, 410
ApeKI GCWGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 124
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 115, 410
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 2 cut(s) 122, 146
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 122, 146
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 220, 301
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 95
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 126
BmeT110I CYCGRG 2 cut(s) 115, 410
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 29, 127
BmrFI CCNGG 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 3 cut(s) 111, 258, 317
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 122, 146
BsiHKCI CYCGRG 2 cut(s) 115, 410
BsiSI CCGG 3 cut(s) 25, 44, 123
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 2 cut(s) 115, 410
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 122, 146
Bsp143I GATC 4 cut(s) 79, 89, 234, 392
BspACI CCGC 1 cut(s) 221
BspCNI CTCAG 3 cut(s) 110, 259, 316
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 29, 127
BspPI GGATC 2 cut(s) 74, 84
BspT104I TTCGAA 1 cut(s) 208
BssMI GATC 4 cut(s) 79, 89, 234, 392
BssSI CACGAG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 243
Bst6I CTCTTC 3 cut(s) 266, 377, 383
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 97, 267, 303
BstENI CCTNNNNNAGG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 4 cut(s) 82, 92, 237, 395
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 79, 89, 234, 392
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 122
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BtgZI GCGATG 3 cut(s) 24, 191, 347
Cac8I GCNNGC 1 cut(s) 330
CaiI CAGNNNCTG 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 1 cut(s) 139
CviJI RGCY 6 cut(s) 30, 72, 120, 144, 242, 266
CviKI_1 RGCY 6 cut(s) 30, 72, 120, 144, 242, 266
DdeI CTNAG 3 cut(s) 97, 267, 303
DpnI GATC 4 cut(s) 81, 91, 236, 394
DpnII GATC 4 cut(s) 79, 89, 234, 392
Eam1104I CTCTTC 3 cut(s) 266, 377, 383
EarI CTCTTC 3 cut(s) 266, 377, 383
Ecl136II GAGCTC 2 cut(s) 120, 144
Eco24I GRGCYC 2 cut(s) 122, 146
Eco47I GGWCC 1 cut(s) 126
Eco53kI GAGCTC 2 cut(s) 120, 144
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 2 cut(s) 115, 410
EcoICRI GAGCTC 2 cut(s) 120, 144
EcoNI CCTNNNNNAGG 1 cut(s) 421
EcoT38I GRGCYC 2 cut(s) 122, 146
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 140, 360
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 138
FbaI TGATCA 1 cut(s) 234
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 252
FriOI GRGCYC 2 cut(s) 122, 146
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
HapII CCGG 3 cut(s) 25, 44, 123
Hin1II CATG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 9 cut(s) 95, 107, 131, 149, 186, 197, 301, 319, 413
HpaII CCGG 3 cut(s) 25, 44, 123
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 9 cut(s) 76, 94, 100, 148, 196, 306, 318, 353, 397
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 2 cut(s) 343, 353
HpyAV CCTTC 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 3 cut(s) 97, 267, 303
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 4 cut(s) 79, 89, 234, 392
LmnI GCTCC 3 cut(s) 27, 77, 125
LpnPI CCDG 6 cut(s) 38, 44, 57, 136, 150, 356
Lsp1109I GCAGC 1 cut(s) 263
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 342
MalI GATC 4 cut(s) 81, 91, 236, 394
MboI GATC 4 cut(s) 79, 89, 234, 392
MboII GAAGA 4 cut(s) 283, 394, 400, 416
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 2 cut(s) 122, 146
MlyI GAGTC 7 cut(s) 89, 140, 143, 195, 295, 313, 422
MmeI TCCRAC 4 cut(s) 117, 240, 261, 331
MnlI CCTC 5 cut(s) 46, 249, 372, 378, 427
MspI CCGG 3 cut(s) 25, 44, 123
MspR9I CCNGG 1 cut(s) 124
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 248
NciI CCSGG 1 cut(s) 124
NdeII GATC 4 cut(s) 79, 89, 234, 392
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 2 cut(s) 29, 127
NspV TTCGAA 1 cut(s) 208
PaeR7I CTCGAG 2 cut(s) 115, 410
PfeI GAWTC 2 cut(s) 107, 197
PflFI GACNNNGTC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 7 cut(s) 89, 139, 143, 194, 295, 313, 421
PpsI GAGTC 7 cut(s) 89, 139, 143, 194, 295, 313, 421
Psp124BI GAGCTC 2 cut(s) 122, 146
PspN4I GGNNCC 2 cut(s) 29, 127
PspPI GGNCC 1 cut(s) 126
PspXI VCTCGAGB 2 cut(s) 115, 410
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 130
SacI GAGCTC 2 cut(s) 122, 146
SalI GTCGAC 1 cut(s) 293
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 4 cut(s) 79, 89, 234, 392
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 7 cut(s) 89, 140, 143, 195, 295, 313, 422
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 2 cut(s) 122, 146
SetI ASST 9 cut(s) 38, 74, 122, 146, 260, 268, 281, 402, 428
Sfr274I CTCGAG 2 cut(s) 115, 410
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 126
SlaI CTCGAG 2 cut(s) 115, 410
SmlI CTYRAG 2 cut(s) 115, 410
SmoI CTYRAG 2 cut(s) 115, 410
SsiI CCGC 1 cut(s) 221
SstI GAGCTC 2 cut(s) 122, 146
StyD4I CCNGG 1 cut(s) 122
TaiI ACGT 1 cut(s) 402
TaqI TCGA 5 cut(s) 116, 134, 208, 294, 411
TaqII GACCGA 1 cut(s) 143
TfiI GAWTC 2 cut(s) 107, 197
TseI GCWGC 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 227
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 126
XagI CCTNNNNNAGG 1 cut(s) 421
XhoI CTCGAG 2 cut(s) 115, 410
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.