Rh5BG019200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017934
Physical Location & Seq
Reverse (-)
1442127 .. 1442603
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG019200.1

Sequence Viewer

Length: 477 bp
ATGGCACACCGGGCCGGTCGACCCGGACCCAACCGGAGAGCGCGCAACCACCGCAACCGTCCACTCGCCCCCGATGCCGAGGATTCCCACGCGCTGCCGAGTTCCGACTCGGACAGCTCCTCCTCCGAATCGGACGGCGAGTCGGCGCGCCTCTCCGGCCTCGCCGCGAGCTTCCGAATCGTCTCGGAGTCGCTGCTGAGGATGGAGCAGACGGAGCTGGAGATGACCAAGGCGAGGGAGGCTCTGCGGCTCGAGGCGGAGAAGCGGCGGCTCGAGTCGGAGGCCGAGTTGACTCAGATGCTGCTGCAGACTCAGCTCCAGATCGCGTCGTTGGTTTCGCGGCGGAGGAGGGATCATCATCCCAGCCGTAAACGGAAGCGAGCTGAGGAAGAAGGAGGAGAAAACGACTCGTCGTCTTCGCCTAAGAGTGAAGGAGCTTTGGCCGTGAGCTTGCTTCAGTGTAATTTGTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.55

Weight (kDa)

8.0

Isoelectric Point (pI)

84.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22160 AT4G22160
fragaria_vesca FvH4_5g10500
malus_domestica MD10G1326900.v1.1
prunus_persica Prupe.4G015100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002091
rosa_laevigata RLG00000030993
rosa_multiflora Rmu_co8270171.1_g000001
rosa_rugosa Rorug04G0394400
rosa_samantha Rh5BG019200
rosa_wichuraiana Rw5G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AccII CGCG 6 cut(s) 43, 92, 148, 167, 326, 340
AciI CCGC 8 cut(s) 52, 165, 247, 257, 265, 268, 340, 343
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 234
AhdI GACNNNNNGTC 2 cut(s) 139, 412
AluBI AGCT 7 cut(s) 117, 171, 217, 316, 383, 437, 450
AluI AGCT 7 cut(s) 117, 171, 217, 316, 383, 437, 450
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 301
Ama87I CYCGRG 2 cut(s) 251, 272
AoxI GGCC 4 cut(s) 12, 157, 282, 441
ApeKI GCWGC 4 cut(s) 94, 193, 301, 304
AscI GGCGCGCC 1 cut(s) 146
AspLEI GCGC 5 cut(s) 43, 45, 94, 148, 150
AspS9I GGNCC 2 cut(s) 12, 26
AsuC2I CCSGG 2 cut(s) 11, 24
AvaI CYCGRG 2 cut(s) 251, 272
AvaII GGWCC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 408
BbvCI CCTCAGC 2 cut(s) 197, 384
BbvI GCAGC 4 cut(s) 81, 180, 288, 291
BccI CCATC 1 cut(s) 196
BceAI ACGGC 3 cut(s) 151, 351, 428
BcnI CCSGG 2 cut(s) 11, 24
BcoDI GTCTC 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 305
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 9 cut(s) 95, 165, 194, 248, 266, 269, 302, 305, 341
BlsI GCNGC 9 cut(s) 96, 166, 195, 249, 267, 270, 303, 306, 342
Bme1390I CCNGG 2 cut(s) 11, 24
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 2 cut(s) 139, 412
BmeT110I CYCGRG 2 cut(s) 251, 272
BmgT120I GGNCC 2 cut(s) 12, 26
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 11, 24
BmsI GCATC 2 cut(s) 64, 288
BpiI GAAGAC 1 cut(s) 408
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpmI CTGGAG 2 cut(s) 239, 302
Bpu10I CCTNAGC 2 cut(s) 197, 384
BpuMI CCSGG 2 cut(s) 11, 24
BsaBI GATNNNNATC 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 78, 228
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 78, 228
BseGI GGATG 2 cut(s) 207, 358
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 4 cut(s) 188, 308, 326, 375
BsePI GCGCGC 2 cut(s) 41, 146
BseRI GAGGAG 4 cut(s) 109, 112, 361, 411
BseXI GCAGC 4 cut(s) 81, 180, 288, 291
BseYI CCCAGC 1 cut(s) 362
Bsh1236I CGCG 6 cut(s) 43, 92, 148, 167, 326, 340
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 14, 159, 284, 443
BsiEI CGRYCG 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 251, 272
BsiSI CCGG 5 cut(s) 10, 15, 24, 34, 156
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsnI GGCC 4 cut(s) 14, 159, 284, 443
BsoBI CYCGRG 2 cut(s) 251, 272
Bsp143I GATC 2 cut(s) 321, 352
BspACI CCGC 8 cut(s) 52, 165, 247, 257, 265, 268, 340, 343
BspANI GGCC 4 cut(s) 14, 159, 284, 443
BspCNI CTCAG 4 cut(s) 189, 307, 325, 376
BspFNI CGCG 6 cut(s) 43, 92, 148, 167, 326, 340
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 78, 228
BssHII GCGCGC 2 cut(s) 41, 146
BssMI GATC 2 cut(s) 321, 352
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 5 cut(s) 43, 148, 169, 381, 452
BstDEI CTNAG 5 cut(s) 197, 294, 312, 384, 423
BstF5I GGATG 2 cut(s) 207, 358
BstFNI CGCG 6 cut(s) 43, 92, 148, 167, 326, 340
BstHHI GCGC 5 cut(s) 43, 45, 94, 148, 150
BstKTI GATC 2 cut(s) 324, 355
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 2 cut(s) 321, 352
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 156, 214, 239, 313
BstSCI CCNGG 2 cut(s) 9, 22
BstSFI CTRYAG 1 cut(s) 305
BstUI CGCG 6 cut(s) 43, 92, 148, 167, 326, 340
BstV1I GCAGC 4 cut(s) 81, 180, 288, 291
BstV2I GAAGAC 1 cut(s) 408
BsuRI GGCC 4 cut(s) 14, 159, 284, 443
BtsCI GGATG 2 cut(s) 207, 358
BtsIMutI CAGTG 1 cut(s) 464
Cac8I GCNNGC 5 cut(s) 43, 148, 169, 381, 452
CaiI CAGNNNCTG 1 cut(s) 301
CfoI GCGC 5 cut(s) 43, 45, 94, 148, 150
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 12, 26
CseI GACGC 1 cut(s) 315
DdeI CTNAG 5 cut(s) 197, 294, 312, 384, 423
DpnI GATC 2 cut(s) 323, 354
DpnII GATC 2 cut(s) 321, 352
DriI GACNNNNNGTC 2 cut(s) 139, 412
EaeI YGGCCR 1 cut(s) 441
Eam1105I GACNNNNNGTC 2 cut(s) 139, 412
EciI GGCGGA 2 cut(s) 272, 358
Eco130I CCWWGG 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 2 cut(s) 251, 272
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 187
FaiI YATR 1 cut(s) 475
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 9 cut(s) 95, 165, 194, 248, 266, 269, 302, 305, 341
FokI GGATG 2 cut(s) 214, 345
Fsp4HI GCNGC 9 cut(s) 95, 165, 194, 248, 266, 269, 302, 305, 341
GlaI GCGC 5 cut(s) 42, 44, 93, 147, 149
GluI GCNGC 9 cut(s) 95, 165, 194, 248, 266, 269, 302, 305, 341
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 2 cut(s) 239, 302
HaeIII GGCC 4 cut(s) 14, 159, 284, 443
HapII CCGG 5 cut(s) 10, 15, 24, 34, 156
HgaI GACGC 1 cut(s) 315
HhaI GCGC 5 cut(s) 43, 45, 94, 148, 150
Hin6I GCGC 5 cut(s) 41, 43, 92, 146, 148
HinP1I GCGC 5 cut(s) 41, 43, 92, 146, 148
HincII GTYRAC 2 cut(s) 20, 291
HindII GTYRAC 2 cut(s) 20, 291
HpaII CCGG 5 cut(s) 10, 15, 24, 34, 156
Hpy166II GTNNAC 4 cut(s) 20, 62, 291, 371
Hpy188I TCNGA 8 cut(s) 106, 112, 127, 133, 176, 187, 280, 297
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 4 cut(s) 20, 62, 291, 371
Hpy99I CGWCG 2 cut(s) 331, 415
HpyAV CCTTC 2 cut(s) 386, 425
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 156, 214, 239, 313
HpyF3I CTNAG 5 cut(s) 197, 294, 312, 384, 423
HspAI GCGC 5 cut(s) 41, 43, 92, 146, 148
Kzo9I GATC 2 cut(s) 321, 352
LmnI GCTCC 5 cut(s) 122, 205, 214, 321, 434
LpnPI CCDG 8 cut(s) 23, 28, 37, 47, 169, 203, 332, 376
Lsp1109I GCAGC 4 cut(s) 81, 180, 288, 291
LweI GCATC 2 cut(s) 64, 288
MalI GATC 2 cut(s) 323, 354
MboI GATC 2 cut(s) 321, 352
MboII GAAGA 2 cut(s) 401, 408
MluCI AATT 1 cut(s) 463
MlyI GAGTC 7 cut(s) 101, 149, 197, 284, 286, 304, 401
MmeI TCCRAC 2 cut(s) 129, 258
MspI CCGG 5 cut(s) 10, 15, 24, 34, 156
MspR9I CCNGG 2 cut(s) 11, 24
MvnI CGCG 6 cut(s) 43, 92, 148, 167, 326, 340
MwoI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 156, 214, 239, 313
NciI CCSGG 2 cut(s) 11, 24
NdeII GATC 2 cut(s) 321, 352
NlaIV GGNNCC 1 cut(s) 28
NmeAIII GCCGAG 3 cut(s) 103, 123, 310
PaeR7I CTCGAG 2 cut(s) 251, 272
PalAI GGCGCGCC 1 cut(s) 146
PauI GCGCGC 2 cut(s) 41, 146
PfeI GAWTC 3 cut(s) 83, 128, 177
PkrI GCNGC 9 cut(s) 96, 166, 195, 249, 267, 270, 303, 306, 342
PleI GAGTC 7 cut(s) 101, 148, 196, 283, 286, 304, 401
PpsI GAGTC 7 cut(s) 101, 148, 196, 283, 286, 304, 401
PspFI CCCAGC 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 12, 26
PspXI VCTCGAGB 2 cut(s) 251, 272
PstI CTGCAG 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 301
PteI GCGCGC 2 cut(s) 41, 146
SalI GTCGAC 1 cut(s) 18
SatI GCNGC 9 cut(s) 95, 165, 194, 248, 266, 269, 302, 305, 341
Sau3AI GATC 2 cut(s) 321, 352
Sau96I GGNCC 2 cut(s) 12, 26
SchI GAGTC 7 cut(s) 101, 149, 197, 284, 286, 304, 401
ScrFI CCNGG 2 cut(s) 11, 24
SetI ASST 7 cut(s) 119, 173, 219, 318, 385, 439, 452
SfaNI GCATC 2 cut(s) 64, 288
SfcI CTRYAG 1 cut(s) 305
Sfr274I CTCGAG 2 cut(s) 251, 272
SgsI GGCGCGCC 1 cut(s) 146
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 2 cut(s) 251, 272
SmlI CTYRAG 2 cut(s) 251, 272
SmoI CTYRAG 2 cut(s) 251, 272
Sse9I AATT 1 cut(s) 463
SsiI CCGC 8 cut(s) 52, 165, 247, 257, 265, 268, 340, 343
StyD4I CCNGG 2 cut(s) 9, 22
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 19, 252, 273
TasI AATT 1 cut(s) 463
TauI GCSGC 5 cut(s) 167, 250, 268, 271, 343
TfiI GAWTC 3 cut(s) 83, 128, 177
TscAI CASTG 1 cut(s) 464
TseI GCWGC 4 cut(s) 94, 193, 301, 304
TspGWI ACGGA 2 cut(s) 227, 388
TspRI CASTG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 26
XhoI CTCGAG 2 cut(s) 251, 272
XmiI GTMKAC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.