RLG00000030993

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017934
Physical Location & Seq
Reverse (-)
1211171 .. 1211650
480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030993

Sequence Viewer

Length: 480 bp
ATGGCACACCGGGCCGGTCGACCCGGACCCAACCGGAGAGCGCGCAACCACCGCAACCGTCCACTCGCCCCCGATGCCGAGGATTCCCACGCGCTGCCGAGCTCCGACCCTGACAGCTCCTCCGAATCGGACGGCGAGTCGGCGCGCCTCTCCGGCCTCGCCGCGAGCTTCCGAATCGTCTCGGAGTCGCTGCTGAGGATGGAGCAGACGGAGCTGGAGATGACCAAGGCGAGGGAGGCTATGCGGCTCGAGGCGGAGAAGCGGCGGCTCGAGTCGGAGGCCGAGTTGACTCAGATGCTGCTGCAGACTCAGCTCCAGATCGCGTCGTTGGTTTCGCGGCGGAGGAGGGATCATCCCAGCCGTAAACGGAAGCGAGCTGAGGAAGAAGGAGAAGAAGGAGGAGAAAACGACTCGTCGTCTTCGCCTAAGAGGGAAGGAGCTTTGGCCTTGAGCTTGCTTCAGTGTAATTTGTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.75

Weight (kDa)

6.93

Isoelectric Point (pI)

82.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22160 AT4G22160
fragaria_vesca FvH4_5g10500
malus_domestica MD10G1326900.v1.1
prunus_persica Prupe.4G015100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002091
rosa_laevigata RLG00000030993
rosa_multiflora Rmu_co8270171.1_g000001
rosa_rugosa Rorug04G0394400
rosa_samantha Rh5BG019200
rosa_wichuraiana Rw5G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AccII CGCG 6 cut(s) 43, 92, 145, 164, 323, 337
AciI CCGC 8 cut(s) 52, 162, 244, 254, 262, 265, 337, 340
AclWI GGATC 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 231
AhdI GACNNNNNGTC 2 cut(s) 136, 415
AluBI AGCT 8 cut(s) 102, 117, 168, 214, 313, 377, 440, 453
AluI AGCT 8 cut(s) 102, 117, 168, 214, 313, 377, 440, 453
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 298
Ama87I CYCGRG 2 cut(s) 248, 269
AoxI GGCC 4 cut(s) 12, 154, 279, 444
ApeKI GCWGC 4 cut(s) 94, 190, 298, 301
AscI GGCGCGCC 1 cut(s) 143
AspLEI GCGC 5 cut(s) 43, 45, 94, 145, 147
AspS9I GGNCC 2 cut(s) 12, 26
AsuC2I CCSGG 2 cut(s) 11, 24
AvaI CYCGRG 2 cut(s) 248, 269
AvaII GGWCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 104
BbvCI CCTCAGC 2 cut(s) 194, 378
BbvI GCAGC 4 cut(s) 81, 177, 285, 288
BccI CCATC 1 cut(s) 193
BceAI ACGGC 2 cut(s) 148, 345
BcnI CCSGG 2 cut(s) 11, 24
BcoDI GTCTC 1 cut(s) 184
BfmI CTRYAG 1 cut(s) 302
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
BlsI GCNGC 9 cut(s) 96, 163, 192, 246, 264, 267, 300, 303, 339
Bme1390I CCNGG 2 cut(s) 11, 24
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 2 cut(s) 136, 415
BmeT110I CYCGRG 2 cut(s) 248, 269
BmgT120I GGNCC 2 cut(s) 12, 26
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 11, 24
BmsI GCATC 2 cut(s) 64, 285
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 2 cut(s) 236, 299
Bpu10I CCTNAGC 2 cut(s) 194, 378
BpuEI CTTGAG 1 cut(s) 469
BpuMI CCSGG 2 cut(s) 11, 24
BsaJI CCNNGG 2 cut(s) 78, 225
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 78, 225
BseGI GGATG 2 cut(s) 204, 352
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 4 cut(s) 185, 305, 323, 369
BsePI GCGCGC 2 cut(s) 41, 143
BseRI GAGGAG 3 cut(s) 109, 358, 414
BseXI GCAGC 4 cut(s) 81, 177, 285, 288
BseYI CCCAGC 1 cut(s) 356
Bsh1236I CGCG 6 cut(s) 43, 92, 145, 164, 323, 337
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 14, 156, 281, 446
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 2 cut(s) 248, 269
BsiSI CCGG 5 cut(s) 10, 15, 24, 34, 153
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 184
BsmBI CGTCTC 1 cut(s) 184
BsnI GGCC 4 cut(s) 14, 156, 281, 446
BsoBI CYCGRG 2 cut(s) 248, 269
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 318, 349
BspACI CCGC 8 cut(s) 52, 162, 244, 254, 262, 265, 337, 340
BspANI GGCC 4 cut(s) 14, 156, 281, 446
BspCNI CTCAG 4 cut(s) 186, 304, 322, 370
BspFNI CGCG 6 cut(s) 43, 92, 145, 164, 323, 337
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 306
BspPI GGATC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 78, 225
BssHII GCGCGC 2 cut(s) 41, 143
BssMI GATC 2 cut(s) 318, 349
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 59
BstC8I GCNNGC 5 cut(s) 43, 145, 166, 375, 455
BstDEI CTNAG 5 cut(s) 194, 291, 309, 378, 426
BstF5I GGATG 2 cut(s) 204, 352
BstFNI CGCG 6 cut(s) 43, 92, 145, 164, 323, 337
BstHHI GCGC 5 cut(s) 43, 45, 94, 145, 147
BstKTI GATC 2 cut(s) 321, 352
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 318, 349
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 153, 211, 236, 310
BstSCI CCNGG 2 cut(s) 9, 22
BstSFI CTRYAG 1 cut(s) 302
BstUI CGCG 6 cut(s) 43, 92, 145, 164, 323, 337
BstV1I GCAGC 4 cut(s) 81, 177, 285, 288
BstV2I GAAGAC 1 cut(s) 411
BsuRI GGCC 4 cut(s) 14, 156, 281, 446
BtsCI GGATG 2 cut(s) 204, 352
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 5 cut(s) 43, 145, 166, 375, 455
CaiI CAGNNNCTG 1 cut(s) 298
CfoI GCGC 5 cut(s) 43, 45, 94, 145, 147
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 12, 26
CseI GACGC 1 cut(s) 312
DdeI CTNAG 5 cut(s) 194, 291, 309, 378, 426
DpnI GATC 2 cut(s) 320, 351
DpnII GATC 2 cut(s) 318, 349
DriI GACNNNNNGTC 2 cut(s) 136, 415
Eam1105I GACNNNNNGTC 2 cut(s) 136, 415
EciI GGCGGA 2 cut(s) 269, 355
Ecl136II GAGCTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 2 cut(s) 248, 269
EcoICRI GAGCTC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 184
FaiI YATR 2 cut(s) 242, 478
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
FokI GGATG 2 cut(s) 211, 339
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
GlaI GCGC 5 cut(s) 42, 44, 93, 144, 146
GluI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 2 cut(s) 236, 299
HaeIII GGCC 4 cut(s) 14, 156, 281, 446
HapII CCGG 5 cut(s) 10, 15, 24, 34, 153
HgaI GACGC 1 cut(s) 312
HhaI GCGC 5 cut(s) 43, 45, 94, 145, 147
Hin6I GCGC 5 cut(s) 41, 43, 92, 143, 145
HinP1I GCGC 5 cut(s) 41, 43, 92, 143, 145
HincII GTYRAC 2 cut(s) 20, 288
HindII GTYRAC 2 cut(s) 20, 288
HinfI GANTC 9 cut(s) 83, 125, 137, 174, 185, 272, 289, 307, 410
HpaII CCGG 5 cut(s) 10, 15, 24, 34, 153
Hpy166II GTNNAC 4 cut(s) 20, 62, 288, 365
Hpy188I TCNGA 7 cut(s) 106, 124, 130, 173, 184, 277, 294
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 4 cut(s) 20, 62, 288, 365
Hpy99I CGWCG 2 cut(s) 328, 418
HpyAV CCTTC 3 cut(s) 380, 389, 428
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 153, 211, 236, 310
HpyF3I CTNAG 5 cut(s) 194, 291, 309, 378, 426
HspAI GCGC 5 cut(s) 41, 43, 92, 143, 145
Kzo9I GATC 2 cut(s) 318, 349
LmnI GCTCC 6 cut(s) 107, 122, 202, 211, 318, 437
LpnPI CCDG 9 cut(s) 23, 28, 37, 47, 123, 166, 200, 329, 370
Lsp1109I GCAGC 4 cut(s) 81, 177, 285, 288
LweI GCATC 2 cut(s) 64, 285
MalI GATC 2 cut(s) 320, 351
MboI GATC 2 cut(s) 318, 349
MboII GAAGA 3 cut(s) 395, 404, 411
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 466
MlyI GAGTC 6 cut(s) 146, 194, 281, 283, 301, 404
MmeI TCCRAC 2 cut(s) 129, 255
MspI CCGG 5 cut(s) 10, 15, 24, 34, 153
MspR9I CCNGG 2 cut(s) 11, 24
MvnI CGCG 6 cut(s) 43, 92, 145, 164, 323, 337
MwoI GCNNNNNNNGC 7 cut(s) 11, 51, 74, 153, 211, 236, 310
NciI CCSGG 2 cut(s) 11, 24
NdeII GATC 2 cut(s) 318, 349
NlaIV GGNNCC 1 cut(s) 28
NmeAIII GCCGAG 3 cut(s) 103, 123, 307
PaeR7I CTCGAG 2 cut(s) 248, 269
PalAI GGCGCGCC 1 cut(s) 143
PauI GCGCGC 2 cut(s) 41, 143
PfeI GAWTC 3 cut(s) 83, 125, 174
PkrI GCNGC 9 cut(s) 96, 163, 192, 246, 264, 267, 300, 303, 339
PleI GAGTC 6 cut(s) 145, 193, 280, 283, 301, 404
PpsI GAGTC 6 cut(s) 145, 193, 280, 283, 301, 404
Psp124BI GAGCTC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 2 cut(s) 12, 26
PspXI VCTCGAGB 2 cut(s) 248, 269
PstI CTGCAG 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 298
PteI GCGCGC 2 cut(s) 41, 143
SacI GAGCTC 1 cut(s) 104
SalI GTCGAC 1 cut(s) 18
SatI GCNGC 9 cut(s) 95, 162, 191, 245, 263, 266, 299, 302, 338
Sau3AI GATC 2 cut(s) 318, 349
Sau96I GGNCC 2 cut(s) 12, 26
SchI GAGTC 6 cut(s) 146, 194, 281, 283, 301, 404
ScrFI CCNGG 2 cut(s) 11, 24
SduI GDGCHC 1 cut(s) 104
SetI ASST 8 cut(s) 104, 119, 170, 216, 315, 379, 442, 455
SfaNI GCATC 2 cut(s) 64, 285
SfcI CTRYAG 1 cut(s) 302
Sfr274I CTCGAG 2 cut(s) 248, 269
SgsI GGCGCGCC 1 cut(s) 143
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 2 cut(s) 248, 269
SmlI CTYRAG 3 cut(s) 248, 269, 448
SmoI CTYRAG 3 cut(s) 248, 269, 448
Sse9I AATT 1 cut(s) 466
SsiI CCGC 8 cut(s) 52, 162, 244, 254, 262, 265, 337, 340
SstI GAGCTC 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 9, 22
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 19, 249, 270
TasI AATT 1 cut(s) 466
TauI GCSGC 5 cut(s) 164, 247, 265, 268, 340
TfiI GAWTC 3 cut(s) 83, 125, 174
TscAI CASTG 1 cut(s) 467
TseI GCWGC 4 cut(s) 94, 190, 298, 301
TspGWI ACGGA 2 cut(s) 224, 382
TspRI CASTG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 26
XhoI CTCGAG 2 cut(s) 248, 269
XmiI GTMKAC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.