FvH4_5g10500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017934
Physical Location & Seq
Forward (+)
5964623 .. 5965090
468 bp
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UTR
Exon/CDS
Intron
FvH4_5g10500.t1

Sequence Viewer

Length: 468 bp
ATGGCGCACCGGAGAGGGCGCAACCGCCACCGCAACCGTCCACTCGCCCCCGATGCCGCGGATACCCACGCGCTGCCGATTTCCGACTCGGACAGCTCCTCCGACTCGGAAGGCGAGTCTGCTCGGCTGTCCGGTCTCGGTGCGAGCTTCCGAATCGTGTCGGAGTCGCTGTTGAGGATGGAGCAGACGGAGCTGGAGATGGCCAAGGCGAGGGAGGCTCTGCGGCTCAAGGCGGAGAAGCGGCGGCTGGAGTCGGAGGCGGAGTTGACTGAGATGCTGCTCCAGACTCAGCTCCAGATCGCGTCGTTGGTTTCGCGGGGGAGAGATCATCATCGCAGCCGTAAACGGAAGCGAGCTGAGGAGAAGGAAGATGAAGGGGAAGAAAACGACTCGTCGTCTTCTTCGGCTGTGTCCAAAAGAGAAGGAGGTTTGGCATTGAGCCTGCTCCAGTGTAGCATGTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

6.99

Isoelectric Point (pI)

70.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22160 AT4G22160
fragaria_vesca FvH4_5g10500
malus_domestica MD10G1326900.v1.1
prunus_persica Prupe.4G015100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002091
rosa_laevigata RLG00000030993
rosa_multiflora Rmu_co8270171.1_g000001
rosa_rugosa Rorug04G0394400
rosa_samantha Rh5BG019200
rosa_wichuraiana Rw5G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 59, 71, 302, 316
AcoI YGGCCR 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 210
AhdI GACNNNNNGTC 1 cut(s) 394
AluBI AGCT 5 cut(s) 96, 147, 193, 292, 356
AluI AGCT 5 cut(s) 96, 147, 193, 292, 356
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 3 cut(s) 73, 277, 336
AspLEI GCGC 3 cut(s) 7, 21, 73
BalI TGGCCA 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 60, 264, 348
BccI CCATC 2 cut(s) 172, 193
BceAI ACGGC 1 cut(s) 324
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 140
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 7 cut(s) 57, 74, 224, 242, 245, 278, 337
BlsI GCNGC 7 cut(s) 58, 75, 225, 243, 246, 279, 338
BmeRI GACNNNNNGTC 1 cut(s) 394
BmsI GCATC 2 cut(s) 43, 264
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpmI CTGGAG 5 cut(s) 215, 266, 269, 278, 431
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 57, 204
BsaWI WCCGGW 2 cut(s) 9, 131
BsaXI ACNNNNNCTCC 6 cut(s) 83, 113, 155, 185, 248, 278
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 448
Bse8I GATNNNNATC 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 57, 204
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 3 cut(s) 261, 302, 348
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 2 cut(s) 88, 374
BseXI GCAGC 3 cut(s) 60, 264, 348
Bsh1236I CGCG 4 cut(s) 59, 71, 302, 316
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 10, 132
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 203
Bso31I GGTCTC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 297, 325
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 3 cut(s) 262, 301, 349
BspFNI CGCG 4 cut(s) 59, 71, 302, 316
BspTNI GGTCTC 1 cut(s) 140
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 57, 204
BssMI GATC 2 cut(s) 297, 325
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 145, 354, 443
BstDEI CTNAG 3 cut(s) 270, 288, 357
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 4 cut(s) 59, 71, 302, 316
BstHHI GCGC 3 cut(s) 7, 21, 73
BstKTI GATC 2 cut(s) 300, 328
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 297, 325
BstMWI GCNNNNNNNGC 3 cut(s) 53, 190, 215
BstNSI RCATGY 1 cut(s) 460
BstUI CGCG 4 cut(s) 59, 71, 302, 316
BstV1I GCAGC 3 cut(s) 60, 264, 348
BstV2I GAAGAC 1 cut(s) 390
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 145, 354, 443
CfoI GCGC 3 cut(s) 7, 21, 73
Cfr42I CCGCGG 1 cut(s) 60
CseI GACGC 1 cut(s) 291
CviAII CATG 1 cut(s) 457
DdeI CTNAG 3 cut(s) 270, 288, 357
DpnI GATC 2 cut(s) 299, 327
DpnII GATC 2 cut(s) 297, 325
DriI GACNNNNNGTC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 394
EciI GGCGGA 2 cut(s) 248, 275
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 460
FaiI YATR 2 cut(s) 458, 466
FatI CATG 1 cut(s) 456
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 7 cut(s) 57, 74, 224, 242, 245, 278, 337
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 7 cut(s) 57, 74, 224, 242, 245, 278, 337
GlaI GCGC 3 cut(s) 6, 20, 72
GluI GCNGC 7 cut(s) 57, 74, 224, 242, 245, 278, 337
GsuI CTGGAG 5 cut(s) 215, 266, 269, 278, 431
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 10, 132
HgaI GACGC 1 cut(s) 291
HhaI GCGC 3 cut(s) 7, 21, 73
Hin1II CATG 1 cut(s) 460
Hin6I GCGC 3 cut(s) 5, 19, 71
HinP1I GCGC 3 cut(s) 5, 19, 71
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HinfI GANTC 8 cut(s) 86, 104, 116, 153, 164, 251, 286, 389
HpaII CCGG 2 cut(s) 10, 132
Hpy166II GTNNAC 3 cut(s) 41, 267, 344
Hpy188I TCNGA 7 cut(s) 85, 91, 103, 109, 152, 163, 256
Hpy188III TCNNGA 2 cut(s) 283, 295
Hpy8I GTNNAC 3 cut(s) 41, 267, 344
Hpy99I CGWCG 2 cut(s) 307, 397
HpyAV CCTTC 4 cut(s) 104, 358, 368, 416
HpyCH4III ACNGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 190, 215
HpyF3I CTNAG 3 cut(s) 270, 288, 357
Hsp92II CATG 1 cut(s) 460
HspAI GCGC 3 cut(s) 5, 19, 71
KspI CCGCGG 1 cut(s) 60
Kzo9I GATC 2 cut(s) 297, 325
LmnI GCTCC 6 cut(s) 101, 181, 190, 285, 297, 450
LpnPI CCDG 8 cut(s) 23, 145, 179, 233, 296, 308, 455, 461
Lsp1109I GCAGC 3 cut(s) 60, 264, 348
LweI GCATC 2 cut(s) 43, 264
MalI GATC 2 cut(s) 299, 327
MboI GATC 2 cut(s) 297, 325
MboII GAAGA 4 cut(s) 380, 390, 392, 393
MlsI TGGCCA 1 cut(s) 203
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 7 cut(s) 80, 98, 125, 173, 260, 280, 383
MmeI TCCRAC 4 cut(s) 108, 126, 141, 234
MnlI CCTC 8 cut(s) 8, 109, 168, 204, 208, 250, 352, 419
Mox20I TGGCCA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 10, 132
MvnI CGCG 4 cut(s) 59, 71, 302, 316
MwoI GCNNNNNNNGC 3 cut(s) 53, 190, 215
NdeII GATC 2 cut(s) 297, 325
NlaIII CATG 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 103
NspI RCATGY 1 cut(s) 460
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 7 cut(s) 58, 75, 225, 243, 246, 279, 338
PleI GAGTC 7 cut(s) 80, 98, 124, 172, 259, 280, 383
PpsI GAGTC 7 cut(s) 80, 98, 124, 172, 259, 280, 383
SacII CCGCGG 1 cut(s) 60
SatI GCNGC 7 cut(s) 57, 74, 224, 242, 245, 278, 337
Sau3AI GATC 2 cut(s) 297, 325
SchI GAGTC 7 cut(s) 80, 98, 125, 173, 260, 280, 383
SetI ASST 6 cut(s) 98, 149, 195, 294, 358, 430
SfaNI GCATC 2 cut(s) 43, 264
Sfr303I CCGCGG 1 cut(s) 60
SgrBI CCGCGG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 38
TauI GCSGC 4 cut(s) 59, 226, 244, 247
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 1 cut(s) 455
TseI GCWGC 3 cut(s) 73, 277, 336
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 2 cut(s) 203, 361
TspRI CASTG 1 cut(s) 455
XceI RCATGY 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.