Prupe.4G015100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017934
Physical Location & Seq
Reverse (-)
695547 .. 696962
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G015100.1

Sequence Viewer

Length: 522 bp
ATGGCATTTCAGACCGGTCGAACCAGACCGCCGAACCGGAACGCACGCAACAACGAGGGCCGTCAGAATTACGCCTTTGATGCCGGGCTCTTATCCGGCGCACGCCCAAACGTAGCCGATCGCGATGGTGAAGATTCTGTCGTGCAGTTCAGCTCTGACTCGGAGAGCTCCTCCGACTCGGATGGCGAGTCGACGCAGTTGTCAGGACTCGCGGCGAGCTTCCGAGTGGTGTCCGATTCGCTTCTGAGAATGGAGCAAACAGAGCTGGAGATGGCCAAGGCAAGGGAGGCTTTGCGGTTGAAAGCGGAGAAGCAGCGGGTTGAGCTGGAGGCCGAGTTGACTCAGATGCTGTTGCAGACTCAGTTGCAGGTGGCGTCGTTGGTTTCGCAGCAGAGTCCGAGGCGTAAAAGGAAGCGAGTTGAAGACGCAGATGAGTCACCGTCGCCGTCGCCGTCGTCATCAATCTCCCAAAGGGAAGGAGCTTTGGTGTTGAGCCTTGTTCAATGCAATTTGCTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.04

Weight (kDa)

5.19

Isoelectric Point (pI)

64.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017934)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22160 AT4G22160
fragaria_vesca FvH4_5g10500
malus_domestica MD10G1326900.v1.1
prunus_persica Prupe.4G015100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0002091
rosa_laevigata RLG00000030993
rosa_multiflora Rmu_co8270171.1_g000001
rosa_rugosa Rorug04G0394400
rosa_samantha Rh5BG019200
rosa_wichuraiana Rw5G001550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
AasI GACNNNNNNGTC 1 cut(s) 199
Acc36I ACCTGC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 191
AccII CGCG 2 cut(s) 123, 212
AciI CCGC 5 cut(s) 29, 212, 295, 305, 316
AcoI YGGCCR 1 cut(s) 273
AcyI GRCGYC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 282
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 3 cut(s) 301, 422, 503
AluBI AGCT 6 cut(s) 153, 168, 219, 265, 325, 482
AluI AGCT 6 cut(s) 153, 168, 219, 265, 325, 482
Alw21I GWGCWC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 349
AoxI GGCC 3 cut(s) 58, 273, 330
ApeKI GCWGC 2 cut(s) 313, 388
AsiGI ACCGGT 1 cut(s) 14
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 140, 429
BalI TGGCCA 1 cut(s) 275
BanII GRGCYC 2 cut(s) 90, 170
BbsI GAAGAC 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 325, 400
BccI CCATC 3 cut(s) 119, 176, 265
BceAI ACGGC 3 cut(s) 45, 430, 436
BcnI CCSGG 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 3 cut(s) 213, 314, 389
BlsI GCNGC 3 cut(s) 214, 315, 390
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 70, 336
BpiI GAAGAC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpmI CTGGAG 2 cut(s) 287, 347
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 276, 398
BsaWI WCCGGW 2 cut(s) 14, 36
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 276, 398
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 236, 356, 374
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 325, 400
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 2 cut(s) 123, 212
Bsh1285I CGRYCG 2 cut(s) 19, 121
BshFI GGCC 3 cut(s) 60, 275, 332
BshTI ACCGGT 1 cut(s) 14
BsiEI CGRYCG 2 cut(s) 19, 121
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 4 cut(s) 15, 37, 84, 96
BslI CCNNNNNNNGG 1 cut(s) 282
BsnI GGCC 3 cut(s) 60, 275, 332
Bsp1286I GDGCHC 2 cut(s) 90, 170
Bsp143I GATC 1 cut(s) 118
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 5 cut(s) 29, 212, 295, 305, 316
BspANI GGCC 3 cut(s) 60, 275, 332
BspCNI CTCAG 3 cut(s) 237, 355, 373
BspFNI CGCG 2 cut(s) 123, 212
BspMI ACCTGC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 276, 398
BssMI GATC 1 cut(s) 118
BssNI GRCGYC 1 cut(s) 374
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 441
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 46, 103, 217
BstDEI CTNAG 3 cut(s) 245, 342, 360
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 2 cut(s) 123, 212
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMCI CGRYCG 2 cut(s) 19, 121
BstMWI GCNNNNNNNGC 4 cut(s) 80, 262, 287, 322
BstSCI CCNGG 1 cut(s) 83
BstUI CGCG 2 cut(s) 123, 212
BstV1I GCAGC 2 cut(s) 325, 400
BstV2I GAAGAC 1 cut(s) 429
BsuRI GGCC 3 cut(s) 60, 275, 332
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 1 cut(s) 187
BtuMI TCGCGA 1 cut(s) 123
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 3 cut(s) 46, 103, 217
CaiI CAGNNNCTG 1 cut(s) 349
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 58
CseI GACGC 3 cut(s) 202, 363, 434
CspAI ACCGGT 1 cut(s) 14
DdeI CTNAG 3 cut(s) 245, 342, 360
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DrdI GACNNNNNNGTC 1 cut(s) 199
DseDI GACNNNNNNGTC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 90, 170
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 90, 170
ErhI CCWWGG 1 cut(s) 276
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 213, 314, 389
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 90, 170
Fsp4HI GCNGC 3 cut(s) 213, 314, 389
GlaI GCGC 1 cut(s) 100
GluI GCNGC 3 cut(s) 213, 314, 389
GsuI CTGGAG 2 cut(s) 287, 347
HaeIII GGCC 3 cut(s) 60, 275, 332
HapII CCGG 4 cut(s) 15, 37, 84, 96
HgaI GACGC 3 cut(s) 202, 363, 434
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 374
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 2 cut(s) 192, 339
HindII GTYRAC 2 cut(s) 192, 339
HpaII CCGG 4 cut(s) 15, 37, 84, 96
HphI GGTGA 2 cut(s) 140, 429
Hpy166II GTNNAC 2 cut(s) 192, 339
Hpy188III TCNNGA 2 cut(s) 122, 204
Hpy8I GTNNAC 2 cut(s) 192, 339
Hpy99I CGWCG 5 cut(s) 196, 379, 445, 451, 457
HpyAV CCTTC 1 cut(s) 470
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 145, 355, 367, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 262, 287, 322
HpyF3I CTNAG 3 cut(s) 245, 342, 360
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 374
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 3 cut(s) 173, 253, 479
LpnPI CCDG 9 cut(s) 28, 37, 50, 97, 109, 189, 251, 311, 353
Lsp1109I GCAGC 2 cut(s) 325, 400
LweI GCATC 2 cut(s) 70, 336
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 435
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 143, 434
MhlI GDGCHC 2 cut(s) 90, 170
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 2 cut(s) 67, 508
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 8 cut(s) 152, 170, 197, 201, 334, 352, 403, 443
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 49, 181, 280, 322, 393
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 4 cut(s) 15, 37, 84, 96
MspR9I CCNGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 123, 212
MwoI GCNNNNNNNGC 4 cut(s) 80, 262, 287, 322
NciI CCSGG 1 cut(s) 85
NdeII GATC 1 cut(s) 118
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 435
NruI TCGCGA 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 449
PfeI GAWTC 2 cut(s) 134, 236
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 3 cut(s) 214, 315, 390
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 8 cut(s) 152, 170, 196, 201, 334, 352, 402, 442
PpsI GAGTC 8 cut(s) 152, 170, 196, 201, 334, 352, 402, 442
Psp124BI GAGCTC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 349
PvuI CGATCG 1 cut(s) 121
RruI TCGCGA 1 cut(s) 123
SacI GAGCTC 1 cut(s) 170
SalI GTCGAC 1 cut(s) 190
SatI GCNGC 3 cut(s) 213, 314, 389
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 8 cut(s) 152, 170, 197, 201, 334, 352, 403, 443
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 2 cut(s) 90, 170
SetI ASST 8 cut(s) 114, 155, 170, 221, 267, 327, 372, 484
SfaNI GCATC 2 cut(s) 70, 336
Sse9I AATT 2 cut(s) 67, 508
SsiI CCGC 5 cut(s) 29, 212, 295, 305, 316
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 19, 191
TasI AATT 2 cut(s) 67, 508
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 2 cut(s) 134, 236
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 2 cut(s) 313, 388
Tsp45I GTSAC 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.