AT4G23800

High Mobility Group

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014151
Physical Location & Seq
Forward (+)
12390167 .. 12392710
2544 bp
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UTR
Exon/CDS
Intron
AT4G23800.1

Sequence Viewer

Length: 1371 bp
ATGGCGACCAACGCAGATCCAGCTCCGACGAAGAAACCAAGGAACAGTAGAAAGGCGTTGAAGCAGAAGAATGAGCTCGTGGAGACGCCACCATCGCCTGTCTCCGTCAAGGGGAAGTCAGCGAAGTCTTTCGAGCAAGATCTGATGGAGATGCAGACAATGTTGGAGAAGATGAAGATCGAGAAGGATAAGACGGAGGAGTTACTTAAGGAGAAGGATGAGATTCTGAGAAAGAAGGAGGAGGAGCTAGAGACCAGAGACGCTGAGCAGGAGAAGCTCAAGGTGGAGCTGAAGAAGCTTCAGAAGATGAAGGAATTCAAACCTAACATGACTTTTGCTTGCGGTCAGTCATCTCTCACACAGGCTGAGCAAGAAAAGGCGAATAAGAAGAAGAAAAAGGATTGTCCTGAGACAAAGCGACCATCGTCCTCATACGTTTTGTGGTGTAAAGATCAATGGACTGAAGTCAAGAAGGAAAACCCTGAGGCTGACTTCAAGGAGACTTCGAACATTCTGGGGGCTAAATGGAAGTCTCTTAGTGCAGAAGATAAGAAGCCTTACGAGGAAAGGTACCAGGTTGAGAAAGAAGCTTACCTCCAGGTCATTGCTAAGGAGAAGCGCGAGAAGGAGGCCATGAAGCTTCTGGAGGATGACCAGAAGCAGAGAACTGCAATGGAATTGCTTGATCAGTATCTCAACTTTGTCCAGGAAGCTGAACAGGACAACAAGAAGAAGAACAAGAAGGAGAAGGACCCTCTGAAGCCAAAACATCCCGTATCTGCCTTCCTTGTTTATGCAAACGAGAGGAGAGCTGCTTTACGCGAAGAAAACAAAAGCGTCGTGGAGGTCGCAAAGATCACTGGAGAGGAGTGGAAGAACTTGTCAGACAAGAAAAAGGCACCCTACGAGAAGGTGGCAAAGAAGAACAAGGAGACATACCTGCAAGCAATGGAGGAATACAAGAGGACAAAGGAAGAAGAAGCCCTGAGTCAGAAGAAAGAAGAAGAGGAACTCTTGAAACTCCACAAACAAGAAGCTCTTCAAATGCTTAAGAAGAAGGAGAAAACTGATAATCTGATCAAGAAGGAGAAGGCGACCAAGAAGAAGAAGAACGAAAACGTTGACCCTAACAAACCAAAGAAGCCTGCTTCTTCATACTTTCTCTTCAGCAAGGACGAAAGGAAGAAATTGACAGAAGAACGTCCCGGGACAAACAACGCTACTGTTACTGCTCTCATTTCACTGAAATGGAAGGAATTGAGTGAAGAAGAGAAGCAAGTTTACAACGGAAAGGCCGCAAAACTGATGGAAGCATACAAAAAGGAAGTGGAAGCTTACAACAAGAAGTCTGCGGCTACTACCAGTAGCTAG

Protein Analysis

456

Amino Acids

53.23

Weight (kDa)

9.31

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box PF00505 138 - 200 3.7e-17 HMG (high mobility group) box
HMG_box_2 PF09011 138 - 199 1.2e-12 HMG-box domain
HMG_box_2 PF09011 252 - 320 5.9e-11 HMG-box domain
HMG_box PF00505 255 - 321 2.1e-16 HMG (high mobility group) box
HMG_box_2 PF09011 376 - 447 8.1e-14 HMG-box domain
HMG_box PF00505 379 - 447 4e-17 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11080 AT4G23800 AT4G23800
fragaria_vesca FvH4_5g04120 FvH4_5g04120
malus_domestica MD06G1103000.v1.1 MD14G1121900.v1.1
prunus_persica Prupe.5G115800_v2.0.a1
pyrus_communis pycom06g09760
rosa_chinensis RchiOBHm_Chr7g0195371
rosa_multiflora Rmu_sc0007366.1_g000005
rosa_roxburghii Rroxscaffold_3G00260530
rosa_rugosa Rorug07G0022800
rosa_samantha Rh7AG150100 Rh7BG151600 Rh7DG151200
rosa_wichuraiana Rw7G012810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 948
Acc65I GGTACC 1 cut(s) 570
AccB1I GGYRCC 2 cut(s) 570, 898
AccII CGCG 2 cut(s) 621, 822
AciI CCGC 3 cut(s) 342, 1296, 1352
AclI AACGTT 1 cut(s) 1119
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 314
AcuI CTGAAG 5 cut(s) 284, 311, 483, 779, 1150
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 111
AflII CTTAAG 2 cut(s) 206, 1049
AgsI TTSAA 5 cut(s) 61, 319, 496, 1018, 1043
AjnI CCWGG 3 cut(s) 573, 597, 705
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 8 cut(s) 77, 106, 245, 252, 404, 494, 537, 926
AlwI GGATC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 1205
AoxI GGCC 2 cut(s) 630, 1293
ApeKI GCWGC 1 cut(s) 812
ApoI RAATTY 1 cut(s) 314
Asp700I GAANNNNTTC 3 cut(s) 128, 314, 1038
Asp718I GGTACC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 751
AsuC2I CCSGG 2 cut(s) 1206, 1207
AsuII TTCGAA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 1205
AvaII GGWCC 1 cut(s) 751
AxyI CCTNAGG 1 cut(s) 483
BanI GGYRCC 2 cut(s) 570, 898
BanII GRGCYC 1 cut(s) 78
BarI GAAGNNNNNNTAC 2 cut(s) 1265, 1297
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 799
BccI CCATC 4 cut(s) 100, 139, 430, 1300
BciT130I CCWGG 3 cut(s) 575, 599, 707
BclI TGATCA 2 cut(s) 685, 1077
BcnI CCSGG 2 cut(s) 1206, 1207
BcoDI GTCTC 8 cut(s) 77, 106, 245, 252, 404, 494, 537, 926
BfaI CTAG 2 cut(s) 248, 1369
BfrI CTTAAG 2 cut(s) 206, 1049
BfuAI ACCTGC 1 cut(s) 948
BglII AGATCT 1 cut(s) 139
BisI GCNGC 3 cut(s) 813, 1296, 1353
BlpI GCTNAGC 2 cut(s) 264, 366
BlsI GCNGC 3 cut(s) 814, 1297, 1354
Bme1390I CCNGG 5 cut(s) 575, 599, 707, 1206, 1207
Bme18I GGWCC 1 cut(s) 751
BmeT110I CYCGRG 1 cut(s) 1205
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 3 cut(s) 572, 753, 900
BmrFI CCNGG 5 cut(s) 575, 599, 707, 1206, 1207
BmsI GCATC 1 cut(s) 141
BoxI GACNNNNGTC 2 cut(s) 424, 464
BpmI CTGGAG 3 cut(s) 581, 665, 882
Bpu10I CCTNAGC 1 cut(s) 609
Bpu1102I GCTNAGC 2 cut(s) 264, 366
Bpu14I TTCGAA 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 2 cut(s) 1206, 1207
BsaBI GATNNNNATC 2 cut(s) 176, 690
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 38, 1205
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 865, 1362
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 3 cut(s) 603, 678, 954
Bse8I GATNNNNATC 2 cut(s) 176, 690
BseBI CCWGG 3 cut(s) 575, 599, 707
BseDI CCNNGG 2 cut(s) 38, 1205
BseGI GGATG 3 cut(s) 223, 655, 769
BseJI GATNNNNATC 2 cut(s) 176, 690
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 3 cut(s) 603, 678, 954
BseMII CTCAG 6 cut(s) 218, 255, 357, 399, 474, 977
BseNI ACTGG 2 cut(s) 865, 1362
BseRI GAGGAG 5 cut(s) 212, 254, 257, 820, 881
BseXI GCAGC 1 cut(s) 799
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 2 cut(s) 621, 822
BshFI GGCC 2 cut(s) 632, 1295
BshNI GGYRCC 2 cut(s) 570, 898
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 1205
BsiSI CCGG 1 cut(s) 1206
BslFI GGGAC 2 cut(s) 1188, 1222
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 8 cut(s) 77, 106, 245, 252, 404, 494, 537, 926
BsmBI CGTCTC 2 cut(s) 77, 252
BsmFI GGGAC 2 cut(s) 1188, 1222
BsnI GGCC 2 cut(s) 632, 1295
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 1205
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
Bsp1720I GCTNAGC 2 cut(s) 264, 366
BspACI CCGC 3 cut(s) 342, 1296, 1352
BspANI GGCC 2 cut(s) 632, 1295
BspCNI CTCAG 6 cut(s) 219, 256, 358, 400, 475, 978
BspFNI CGCG 2 cut(s) 621, 822
BspLI GGNNCC 3 cut(s) 572, 753, 900
BspMI ACCTGC 1 cut(s) 948
BspPI GGATC 1 cut(s) 11
BspQI GCTCTTC 1 cut(s) 1044
BspT104I TTCGAA 1 cut(s) 506
BspT107I GGYRCC 2 cut(s) 570, 898
BspTI CTTAAG 2 cut(s) 206, 1049
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 3 cut(s) 603, 678, 954
BsrI ACTGG 2 cut(s) 865, 1362
BssECI CCNNGG 2 cut(s) 38, 1205
BssMI GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
BssNI GRCGYC 1 cut(s) 86
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 3 cut(s) 575, 599, 707
Bst4CI ACNGT 2 cut(s) 47, 1225
Bst6I CTCTTC 4 cut(s) 999, 1044, 1169, 1263
BstACI GRCGYC 1 cut(s) 86
BstAFI CTTAAG 2 cut(s) 206, 1049
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 340, 945, 1146
BstDEI CTNAG 8 cut(s) 227, 264, 366, 408, 483, 536, 609, 986
BstF5I GGATG 3 cut(s) 223, 655, 769
BstFNI CGCG 2 cut(s) 621, 822
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 7 cut(s) 19, 142, 180, 454, 688, 858, 1080
BstMAI GTCTC 8 cut(s) 77, 106, 245, 252, 404, 494, 537, 926
BstMBI GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 94, 274, 295
BstNI CCWGG 3 cut(s) 575, 599, 707
BstPAI GACNNNNGTC 2 cut(s) 424, 464
BstSCI CCNGG 5 cut(s) 573, 597, 705, 1204, 1205
BstUI CGCG 2 cut(s) 621, 822
BstV1I GCAGC 1 cut(s) 799
BstX2I RGATCY 2 cut(s) 16, 139
BstYI RGATCY 2 cut(s) 16, 139
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 2 cut(s) 632, 1295
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 223, 655, 769
BtsIMutI CAGTG 2 cut(s) 858, 1241
BveI ACCTGC 1 cut(s) 948
Cac8I GCNNGC 3 cut(s) 340, 945, 1146
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 1 cut(s) 751
Cfr9I CCCGGG 1 cut(s) 1205
CseI GACGC 3 cut(s) 94, 269, 826
CsiI ACCWGGT 1 cut(s) 573
Csp6I GTAC 1 cut(s) 571
CviAII CATG 2 cut(s) 328, 634
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 8 cut(s) 227, 264, 366, 408, 483, 536, 609, 986
DpnI GATC 7 cut(s) 18, 141, 179, 453, 687, 857, 1079
DpnII GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
Eam1104I CTCTTC 4 cut(s) 999, 1044, 1169, 1263
EarI CTCTTC 4 cut(s) 999, 1044, 1169, 1263
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 5 cut(s) 284, 311, 483, 779, 1150
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 1205
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 3 cut(s) 573, 597, 705
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 2 cut(s) 77, 252
FaeI CATG 2 cut(s) 331, 637
FaiI YATR 7 cut(s) 329, 433, 635, 795, 937, 1156, 1315
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FaqI GGGAC 2 cut(s) 1188, 1222
FatI CATG 2 cut(s) 327, 633
FbaI TGATCA 2 cut(s) 685, 1077
Fnu4HI GCNGC 3 cut(s) 813, 1296, 1353
FokI GGATG 3 cut(s) 230, 662, 756
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 3 cut(s) 813, 1296, 1353
FspBI CTAG 2 cut(s) 248, 1369
GlaI GCGC 1 cut(s) 620
GluI GCNGC 3 cut(s) 813, 1296, 1353
GsuI CTGGAG 3 cut(s) 581, 665, 882
HaeIII GGCC 2 cut(s) 632, 1295
HapII CCGG 1 cut(s) 1206
HgaI GACGC 3 cut(s) 94, 269, 826
HhaI GCGC 1 cut(s) 621
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 331, 637
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HindIII AAGCTT 4 cut(s) 296, 588, 638, 1332
HinfI GANTC 2 cut(s) 223, 988
HpaII CCGG 1 cut(s) 1206
Hpy166II GTNNAC 2 cut(s) 1123, 1282
Hpy188I TCNGA 8 cut(s) 27, 144, 228, 303, 759, 886, 993, 1077
Hpy188III TCNNGA 6 cut(s) 181, 407, 469, 644, 1015, 1081
Hpy8I GTNNAC 2 cut(s) 1123, 1282
Hpy99I CGWCG 2 cut(s) 31, 842
HpyCH4III ACNGT 2 cut(s) 47, 1225
HpyCH4IV ACGT 3 cut(s) 435, 1119, 1201
HpyCH4V TGCA 5 cut(s) 154, 542, 671, 797, 943
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 94, 274, 295
HpyF3I CTNAG 8 cut(s) 227, 264, 366, 408, 483, 536, 609, 986
HpySE526I ACGT 3 cut(s) 435, 1119, 1201
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 331, 637
HspAI GCGC 1 cut(s) 619
KpnI GGTACC 1 cut(s) 574
Ksp22I TGATCA 2 cut(s) 685, 1077
Kzo9I GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 3 cut(s) 28, 244, 286
Lsp1109I GCAGC 1 cut(s) 799
LweI GCATC 1 cut(s) 141
MabI ACCWGGT 1 cut(s) 573
MaeI CTAG 2 cut(s) 248, 1369
MaeII ACGT 3 cut(s) 435, 1119, 1201
MaeIII GTNAC 2 cut(s) 201, 1225
MalI GATC 7 cut(s) 18, 141, 179, 453, 687, 857, 1079
MboI GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
MflI RGATCY 2 cut(s) 16, 139
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 4 cut(s) 314, 677, 1187, 1256
MlyI GAGTC 1 cut(s) 997
MmeI TCCRAC 2 cut(s) 50, 144
MroXI GAANNNNTTC 3 cut(s) 128, 314, 1038
MseI TTAA 2 cut(s) 207, 1050
MslI CAYNNNNRTG 1 cut(s) 1246
MspCI CTTAAG 2 cut(s) 206, 1049
MspI CCGG 1 cut(s) 1206
MspR9I CCNGG 5 cut(s) 575, 599, 707, 1206, 1207
MvaI CCWGG 3 cut(s) 575, 599, 707
MvnI CGCG 2 cut(s) 621, 822
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 94, 274, 295
NciI CCSGG 2 cut(s) 1206, 1207
NdeII GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
NlaIII CATG 2 cut(s) 331, 637
NlaIV GGNNCC 3 cut(s) 572, 753, 900
NspV TTCGAA 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 1044
PdmI GAANNNNTTC 3 cut(s) 128, 314, 1038
PfeI GAWTC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 705
PkrI GCNGC 3 cut(s) 814, 1297, 1354
PleI GAGTC 1 cut(s) 996
PpsI GAGTC 1 cut(s) 996
PpuMI RGGWCCY 1 cut(s) 751
PshAI GACNNNNGTC 2 cut(s) 424, 464
Psp124BI GAGCTC 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 1119
Psp5II RGGWCCY 1 cut(s) 751
Psp6I CCWGG 3 cut(s) 573, 597, 705
PspGI CCWGG 3 cut(s) 573, 597, 705
PspN4I GGNNCC 3 cut(s) 572, 753, 900
PspPI GGNCC 1 cut(s) 751
PspPPI RGGWCCY 1 cut(s) 751
PsuI RGATCY 2 cut(s) 16, 139
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 1 cut(s) 1246
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 2 cut(s) 207, 1050
SatI GCNGC 3 cut(s) 813, 1296, 1353
Sau3AI GATC 7 cut(s) 16, 139, 177, 451, 685, 855, 1077
Sau96I GGNCC 1 cut(s) 751
SchI GAGTC 1 cut(s) 997
ScrFI CCNGG 5 cut(s) 575, 599, 707, 1206, 1207
SduI GDGCHC 1 cut(s) 78
SexAI ACCWGGT 1 cut(s) 573
SfaNI GCATC 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 506
SinI GGWCC 1 cut(s) 751
SmaI CCCGGG 1 cut(s) 1207
SmiMI CAYNNNNRTG 1 cut(s) 1246
SmlI CTYRAG 3 cut(s) 206, 278, 1049
SmoI CTYRAG 3 cut(s) 206, 278, 1049
Sse9I AATT 4 cut(s) 314, 677, 1187, 1256
SsiI CCGC 3 cut(s) 342, 1296, 1352
SspMI CTAG 2 cut(s) 248, 1369
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 5 cut(s) 573, 597, 705, 1204, 1205
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 47, 1225
TaiI ACGT 3 cut(s) 438, 1122, 1204
TaqI TCGA 3 cut(s) 132, 180, 506
TasI AATT 4 cut(s) 314, 677, 1187, 1256
TauI GCSGC 2 cut(s) 1298, 1355
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 207, 1050
Tru9I TTAA 2 cut(s) 207, 1050
TscAI CASTG 2 cut(s) 865, 1248
TseI GCWGC 1 cut(s) 812
TspDTI ATGAA 4 cut(s) 188, 323, 650, 1143
TspGWI ACGGA 3 cut(s) 94, 209, 1302
TspMI CCCGGG 1 cut(s) 1205
TspRI CASTG 2 cut(s) 865, 1248
Vha464I CTTAAG 2 cut(s) 206, 1049
VpaK11BI GGWCC 1 cut(s) 751
XapI RAATTY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XmaI CCCGGG 1 cut(s) 1205
XmnI GAANNNNTTC 3 cut(s) 128, 314, 1038
XspI CTAG 2 cut(s) 248, 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.