Rh7BG151600

High mobility group B protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
11219579 .. 11222479
2901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG151600.1

Sequence Viewer

Length: 1173 bp
ATGGCTGACACTGCAATTACCGATATGCCCAACAACACCAGGAAGCCCAGGACCACCCGAAAGGCGCTGAAGGCCAAGACCCCATCGACAAACGAAGCCAACATCCTCGCCGGAACGGTCTCGGAGAACCACGAGATCCTCTCTCAGCCTCGCACGTCGCCCAAGAAAGCAGCAGCCAAGGCGTCGAGGAAACAGTCGAAAGAAGGCGTCAAGAAGGAGACGCAGTCGAGTTTCGAGAAGGACCTGCAGGAAATGGAGGAGAAGCTTCAGGCTCTGAGGCTCGAGAAGGAGAAGACGGAGGAGATGTTGAAGGAGAAGGATGAGATCTTGAAGCTTAAGGAGGAGGAGCTCGAATCCAAGGGTCGGGAGCAAGATAAGCTTCAGATGGAGCTCAAGAAGTTGCAGAAATTGAAGGAGTTCAAGCCCACCATGGCATTCCCAATTATACCATCACAGAAAGACAAGAAAAAGAAGGGTGGCCCTGAAATGAAAAGGCCATCGCCTCCTTATGTCCTATGGTGCAAAGATCAGTGGAATCAGGTCAAGCAAGAGAACCCTGAGGCAGAGTTTAAGGACATATCAACCATTTTGGGGGCCAAGTGGAAGAATGTCACTGCAGAAGAGAAAAAGCCGTATGAAGAGAAGTACCAGGCGGAGAAGGAAGCCTATTTGCAAGTGATGGCGAAAGAGAAGCGTGAGAGTGAAGCAATGCACCTGTTTGAGGAGGAGCACAAGCAGAAGACAGCTATGGAGTTGCTTGAACAATACATGCAATTCAAACAAGAAGCAGAAAAGGATAACAAGAAGAACAAGAAAGAAAAGGATCCATTGAAACCCAAGCAGCCAATGTCTGCGTTTTTCCTGTTCACAAATGAGAGGCGAGCAGCCTTGAATGCACAGAACATAAAATCGGCTCTAGAGGTTGCAAAAATCACCGGTGAAGAATGGAAGAACATGACAGAGGAGCAAAAGGGTCCATATGAAGAGATGGCAAAGAAGAACAAGGAGAAGTATATGCAAGAAATGGAGGTCTATAAGCAACAGAAGGAAGAGGAAGCTGCCATCTGCAGAAAGGAAGAGGAAGAGATGATGAAACTTCAAAAGCATGAAGCCTTTCAACTTCTCAAGAAGAAGGAGAAGACAGAGAACATAATCAAGGTTTTCTGTTACTAA

Protein Analysis

390

Amino Acids

45.91

Weight (kDa)

9.01

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box PF00505 164 - 228 4e-18 HMG (high mobility group) box
HMG_box_2 PF09011 164 - 227 2e-11 HMG-box domain
HMG_box_2 PF09011 276 - 345 2.3e-14 HMG-box domain
HMG_box PF00505 279 - 346 7.9e-18 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014151)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AciI CCGC 1 cut(s) 653
AclWI GGATC 3 cut(s) 130, 818, 831
AcuI CTGAAG 3 cut(s) 89, 251, 365
AcyI GRCGYC 2 cut(s) 182, 207
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 3 cut(s) 363, 591, 721
AflII CTTAAG 1 cut(s) 335
AgeI ACCGGT 1 cut(s) 935
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 3 cut(s) 38, 47, 648
AluBI AGCT 7 cut(s) 265, 334, 349, 379, 391, 746, 1058
AluI AGCT 7 cut(s) 265, 334, 349, 379, 391, 746, 1058
Alw21I GWGCWC 3 cut(s) 351, 393, 732
Alw26I GTCTC 2 cut(s) 124, 212
AlwI GGATC 3 cut(s) 130, 818, 831
AlwNI CAGNNNCTG 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 4 cut(s) 72, 478, 494, 594
ApeKI GCWGC 5 cut(s) 170, 173, 841, 884, 1058
AsiGI ACCGGT 1 cut(s) 935
Asp700I GAANNNNTTC 2 cut(s) 416, 1113
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 5 cut(s) 51, 241, 479, 594, 974
AsuHPI GGTGA 2 cut(s) 925, 950
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 3 cut(s) 51, 241, 974
AxyI CCTNAGG 1 cut(s) 558
BamHI GGATCC 1 cut(s) 823
BanII GRGCYC 2 cut(s) 351, 393
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 3 cut(s) 299, 746, 1145
Bbv12I GWGCWC 3 cut(s) 351, 393, 732
BbvI GCAGC 5 cut(s) 182, 185, 853, 896, 1045
BccI CCATC 7 cut(s) 91, 379, 457, 505, 673, 982, 1070
BceAI ACGGC 1 cut(s) 616
BciT130I CCWGG 3 cut(s) 40, 49, 650
BcoDI GTCTC 2 cut(s) 124, 212
BfaI CTAG 1 cut(s) 917
BfmI CTRYAG 3 cut(s) 245, 615, 1066
BfoI RGCGCY 1 cut(s) 68
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 324
BisI GCNGC 5 cut(s) 171, 174, 842, 885, 1059
BlsI GCNGC 5 cut(s) 172, 175, 843, 886, 1060
Bme1390I CCNGG 3 cut(s) 40, 49, 650
Bme18I GGWCC 3 cut(s) 51, 241, 974
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 5 cut(s) 51, 241, 479, 594, 974
BmiI GGNNCC 3 cut(s) 595, 825, 975
BmrFI CCNGG 3 cut(s) 40, 49, 650
BpiI GAAGAC 3 cut(s) 299, 746, 1145
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuEI CTTGAG 2 cut(s) 377, 1109
BsaHI GRCGYC 2 cut(s) 182, 207
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 4 cut(s) 47, 177, 357, 429
BsaWI WCCGGW 1 cut(s) 935
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 290, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 363, 591, 721
Bse118I RCCGGY 1 cut(s) 935
Bse21I CCTNAGG 1 cut(s) 558
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 3 cut(s) 40, 49, 650
BseDI CCNNGG 4 cut(s) 47, 177, 357, 429
BseGI GGATG 2 cut(s) 102, 325
BseLI CCNNNNNNNGG 3 cut(s) 363, 591, 721
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 3 cut(s) 158, 266, 549
BseRI GAGGAG 7 cut(s) 272, 314, 356, 359, 737, 740, 977
BseXI GCAGC 5 cut(s) 182, 185, 853, 896, 1045
BshFI GGCC 4 cut(s) 74, 480, 496, 596
BshTI ACCGGT 1 cut(s) 935
BsiHKAI GWGCWC 3 cut(s) 351, 393, 732
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 111, 936
BslI CCNNNNNNNGG 3 cut(s) 363, 591, 721
BsmAI GTCTC 2 cut(s) 124, 212
BsmBI CGTCTC 1 cut(s) 212
BsmI GAATGC 2 cut(s) 434, 898
BsnI GGCC 4 cut(s) 74, 480, 496, 596
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 3 cut(s) 351, 393, 732
Bsp143I GATC 4 cut(s) 135, 324, 526, 823
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 1 cut(s) 653
BspANI GGCC 4 cut(s) 74, 480, 496, 596
BspCNI CTCAG 3 cut(s) 157, 267, 550
BspLI GGNNCC 3 cut(s) 595, 825, 975
BspMAI CTGCAG 3 cut(s) 249, 619, 1070
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 130, 818, 831
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 935
BssAI RCCGGY 1 cut(s) 935
BssECI CCNNGG 4 cut(s) 47, 177, 357, 429
BssMI GATC 4 cut(s) 135, 324, 526, 823
BssNI GRCGYC 2 cut(s) 182, 207
BssSI CACGAG 1 cut(s) 131
BssT1I CCWWGG 3 cut(s) 177, 357, 429
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 3 cut(s) 40, 49, 650
Bst4CI ACNGT 2 cut(s) 118, 195
Bst6I CTCTTC 6 cut(s) 615, 633, 978, 1044, 1071, 1077
BstACI GRCGYC 2 cut(s) 182, 207
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 3 cut(s) 144, 275, 558
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 719
BstF5I GGATG 2 cut(s) 102, 325
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 138, 327, 529, 826
BstMAI GTCTC 2 cut(s) 124, 212
BstMBI GATC 4 cut(s) 135, 324, 526, 823
BstMWI GCNNNNNNNGC 5 cut(s) 11, 71, 179, 376, 893
BstNI CCWGG 3 cut(s) 40, 49, 650
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 3 cut(s) 38, 47, 648
BstSFI CTRYAG 3 cut(s) 245, 615, 1066
BstV1I GCAGC 5 cut(s) 182, 185, 853, 896, 1045
BstV2I GAAGAC 3 cut(s) 299, 746, 1145
BstX2I RGATCY 3 cut(s) 135, 324, 823
BstYI RGATCY 3 cut(s) 135, 324, 823
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 4 cut(s) 74, 480, 496, 596
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 2 cut(s) 102, 325
BtsI GCAGTG 2 cut(s) 9, 612
BtsIMutI CAGTG 3 cut(s) 9, 536, 612
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 882
CaiI CAGNNNCTG 1 cut(s) 274
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 5 cut(s) 51, 241, 479, 594, 974
CseI GACGC 3 cut(s) 171, 196, 229
Csp6I GTAC 1 cut(s) 646
CspAI ACCGGT 1 cut(s) 935
CviAII CATG 4 cut(s) 430, 769, 955, 1106
CviQI GTAC 1 cut(s) 646
DdeI CTNAG 3 cut(s) 144, 275, 558
DpnI GATC 4 cut(s) 137, 326, 528, 825
DpnII GATC 4 cut(s) 135, 324, 526, 823
Eam1104I CTCTTC 6 cut(s) 615, 633, 978, 1044, 1071, 1077
EarI CTCTTC 6 cut(s) 615, 633, 978, 1044, 1071, 1077
EciI GGCGGA 1 cut(s) 668
Ecl136II GAGCTC 2 cut(s) 349, 391
Eco130I CCWWGG 3 cut(s) 177, 357, 429
Eco24I GRGCYC 2 cut(s) 351, 393
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 51, 241, 974
Eco53kI GAGCTC 2 cut(s) 349, 391
Eco57I CTGAAG 3 cut(s) 89, 251, 365
Eco81I CCTNAGG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 2 cut(s) 349, 391
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 38, 47, 648
EcoT14I CCWWGG 3 cut(s) 177, 357, 429
EcoT38I GRGCYC 2 cut(s) 351, 393
ErhI CCWWGG 3 cut(s) 177, 357, 429
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 4 cut(s) 433, 772, 958, 1109
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 4 cut(s) 429, 768, 954, 1105
FauNDI CATATG 1 cut(s) 979
Fnu4HI GCNGC 5 cut(s) 171, 174, 842, 885, 1059
FokI GGATG 2 cut(s) 89, 332
FriOI GRGCYC 2 cut(s) 351, 393
Fsp4HI GCNGC 5 cut(s) 171, 174, 842, 885, 1059
FspBI CTAG 1 cut(s) 917
GlaI GCGC 1 cut(s) 66
GluI GCNGC 5 cut(s) 171, 174, 842, 885, 1059
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 4 cut(s) 74, 480, 496, 596
HapII CCGG 2 cut(s) 111, 936
HgaI GACGC 3 cut(s) 171, 196, 229
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 2 cut(s) 182, 207
Hin1II CATG 4 cut(s) 433, 772, 958, 1109
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 3 cut(s) 263, 332, 377
HinfI GANTC 2 cut(s) 353, 535
HpaII CCGG 2 cut(s) 111, 936
HphI GGTGA 2 cut(s) 925, 950
Hpy166II GTNNAC 1 cut(s) 867
Hpy188I TCNGA 3 cut(s) 124, 276, 384
Hpy188III TCNNGA 8 cut(s) 211, 235, 283, 328, 365, 394, 917, 1126
Hpy8I GTNNAC 1 cut(s) 867
Hpy99I CGWCG 2 cut(s) 160, 187
HpyCH4III ACNGT 2 cut(s) 118, 195
HpyCH4IV ACGT 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 71, 179, 376, 893
HpyF3I CTNAG 3 cut(s) 144, 275, 558
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 2 cut(s) 182, 207
Hsp92II CATG 4 cut(s) 433, 772, 958, 1109
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 4 cut(s) 135, 324, 526, 823
LmnI GCTCC 5 cut(s) 346, 367, 388, 727, 964
Lsp1109I GCAGC 5 cut(s) 182, 185, 853, 896, 1045
MaeI CTAG 1 cut(s) 917
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 610, 1166
MalI GATC 4 cut(s) 137, 326, 528, 825
MboI GATC 4 cut(s) 135, 324, 526, 823
MflI RGATCY 3 cut(s) 135, 324, 823
MhlI GDGCHC 3 cut(s) 351, 393, 732
MluCI AATT 4 cut(s) 15, 407, 441, 773
MroXI GAANNNNTTC 2 cut(s) 416, 1113
MseI TTAA 2 cut(s) 336, 570
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 111, 936
MspR9I CCNGG 3 cut(s) 40, 49, 650
Mva1269I GAATGC 2 cut(s) 434, 898
MvaI CCWGG 3 cut(s) 40, 49, 650
MwoI GCNNNNNNNGC 5 cut(s) 11, 71, 179, 376, 893
NcoI CCATGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 979
NdeII GATC 4 cut(s) 135, 324, 526, 823
NlaIII CATG 4 cut(s) 433, 772, 958, 1109
NlaIV GGNNCC 3 cut(s) 595, 825, 975
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 772
PaeR7I CTCGAG 1 cut(s) 281
PctI GAATGC 2 cut(s) 434, 898
PdmI GAANNNNTTC 2 cut(s) 416, 1113
PfeI GAWTC 2 cut(s) 353, 535
PflFI GACNNNGTC 1 cut(s) 223
PinAI ACCGGT 1 cut(s) 935
PkrI GCNGC 5 cut(s) 172, 175, 843, 886, 1060
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 2 cut(s) 351, 393
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 3 cut(s) 38, 47, 648
PspGI CCWGG 3 cut(s) 38, 47, 648
PspN4I GGNNCC 3 cut(s) 595, 825, 975
PspPI GGNCC 5 cut(s) 51, 241, 479, 594, 974
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 3 cut(s) 249, 619, 1070
PstNI CAGNNNCTG 1 cut(s) 274
PsuI RGATCY 3 cut(s) 135, 324, 823
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
SacI GAGCTC 2 cut(s) 351, 393
SaqAI TTAA 2 cut(s) 336, 570
SatI GCNGC 5 cut(s) 171, 174, 842, 885, 1059
Sau3AI GATC 4 cut(s) 135, 324, 526, 823
Sau96I GGNCC 5 cut(s) 51, 241, 479, 594, 974
SbfI CCTGCAGG 1 cut(s) 249
ScrFI CCNGG 3 cut(s) 40, 49, 650
SdaI CCTGCAGG 1 cut(s) 249
SduI GDGCHC 3 cut(s) 351, 393, 732
SfcI CTRYAG 3 cut(s) 245, 615, 1066
Sfr274I CTCGAG 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 935
SinI GGWCC 3 cut(s) 51, 241, 974
SlaI CTCGAG 1 cut(s) 281
SmlI CTYRAG 4 cut(s) 281, 335, 392, 1124
SmoI CTYRAG 4 cut(s) 281, 335, 392, 1124
Sse8387I CCTGCAGG 1 cut(s) 249
Sse9I AATT 4 cut(s) 15, 407, 441, 773
SsiI CCGC 1 cut(s) 653
SspMI CTAG 1 cut(s) 917
SstI GAGCTC 2 cut(s) 351, 393
StyD4I CCNGG 3 cut(s) 38, 47, 648
StyI CCWWGG 3 cut(s) 177, 357, 429
TaaI ACNGT 2 cut(s) 118, 195
TaiI ACGT 1 cut(s) 158
TaqI TCGA 7 cut(s) 86, 185, 197, 227, 234, 282, 351
TasI AATT 4 cut(s) 15, 407, 441, 773
TfiI GAWTC 2 cut(s) 353, 535
Tru1I TTAA 2 cut(s) 336, 570
Tru9I TTAA 2 cut(s) 336, 570
TscAI CASTG 3 cut(s) 16, 536, 619
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 5 cut(s) 170, 173, 841, 884, 1058
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 5 cut(s) 503, 651, 996, 1106, 1122
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 3 cut(s) 16, 536, 619
Tth111I GACNNNGTC 1 cut(s) 223
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 51, 241, 974
XagI CCTNNNNNAGG 1 cut(s) 719
XbaI TCTAGA 1 cut(s) 916
XceI RCATGY 1 cut(s) 772
XhoI CTCGAG 1 cut(s) 281
XmnI GAANNNNTTC 2 cut(s) 416, 1113
XspI CTAG 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.