Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014151

Physical Location & Seq

Genomic Coordinates Forward (+)

11824273 .. 11827215

Gene Structure 2943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G115800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGCTGACACTGCAGTTGCCGAAGTGCCCACAAGGAAGGCAAGGACCAATCGAAGGGCGCTCAAGGACAAAAACCCATCTGGAAATGAAGCCAATATCCAGGCCGGCAAGGTCTCCGAGCCTGATCCCAGCCCGATCCAAGCGGTATCTCAACTCGACCTGGCAAAGGAGAACCATGAGAGCCTCTCTCAGCCTCGCGCATCCCCCAAGAAATCGAAATCGAAGGCCGCAGCCTCCAAGAAACAGTCCAAGGAGACCCAATCGTCTTTCGAGAAAGATCTGCAAGAAATGCAAGAGAAGCTTCAGGAAATGAGGCTTGAGAAGGAGAAGACTGAAGAGCTGTTGAAGGAGAAAGATGAGATCTTGAAGCTCAAGGAGGAAGAGCTTGAAACCAAGGGCCGAGAGCAAGACAAGCTTCAGATGGAGTTGAAGAAGCTGCAGAAGCTGAAGGAGTTCAAACCCACCATGGCATTCCCAATTGTTCAATCACTGAACGACAAGAAAAAGAAGGGGTGTCCTGAAAAGAAAAGGCCAGCCCCTCCTTATGTCCTGTGGTGCAAAGATCAATGGAATGAGATCAAGAAGGAGAACCCTGAGGCAGAGTTCAAAGAAATCTCAAACATTTTGGGGGCCAAGTGGAAGAACGTCACTGCTGAAGAGAAAAAGCCTTATGAAGAGAGGTACCAGGCTGAGAAGGAAGCTTATTTGCAAGTGACAGCAAAAGAGAAGCGCGAGAGTGAAGCAATGCATCTATTGGAGGAGGAGCACAAGCAGAAGACAGCTATGGAGTTGCTTGAACAATACCTGCAGTTCAAACAAGAAGCAGAGAAAGACAACAAGAAAACCAAGAAAGAAAAGGATCCATTGAAACCCAAGCAACCGATGTCAGCATTTTTCCTATTCACAAATGAGAGGCGAGCAGCTCTGGTTGCAGAGAGCAAAACTGTCCCTGAGATTGCAAAGATCACAGGTGAAGAATGGAAAAACATGACAGAGAAACAAAAACGTCCATATGAAGAGATGGCAAAGAAGAACAAGGAGAAGTATATGCAAGAGATGGAGGTTTACAAACAGACAAAGGAAGAGGAAGCTTCCAGTCTTAAAAGGGAAGAGGAAGAGCTGATGAAACTGCAAAAGCATGAAGCCTTGCAGCTGCTTAAGAAGAAGGAGAAGACAGAAAACATCATTAAGAAAACAAAGGAGGATCAGAAGAAGAAGAAGGAAGAAAAGAAAAATGCTGATGATCCCAACAAGCCCAAGAAGCCTGCCTCCTCATACATCTTGTTCAGCAAGGAGGCAAGAAAGAGTCTACTGGAGGAGAGACCAGGGACCAACAGCTCCACCATCACTGCACTGATTTCAGTGAAATGGAAGGAATTGAGTGAAGAAGAGAGGAAGCCTTGGAATGACAAGGCTGCTGAAGCAATGGAGGCATACAAGAAGGAACTAGAAGAATACAACAAAGGTGTTGCTGCTTCTGCTGCTGCAACCTCTCTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

501

Amino Acids

58.14

Weight (kDa)

9.08

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014151)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11080 AT4G23800 AT4G23800
fragaria_vesca	FvH4_5g04120 FvH4_5g04120
malus_domestica	MD06G1103000.v1.1 MD14G1121900.v1.1
prunus_persica	Prupe.5G115800_v2.0.a1
pyrus_communis	pycom06g09760
rosa_chinensis	RchiOBHm_Chr7g0195371
rosa_multiflora	Rmu_sc0007366.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260530
rosa_rugosa	Rorug07G0022800
rosa_samantha	Rh7AG150100 Rh7BG151600 Rh7DG151200
rosa_wichuraiana	Rw7G012810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	813
Acc65I	GGTACC	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	681
AccI	GTMKAC	1 cut(s)	1309
AccII	CGCG	2 cut(s)	198, 732
AciI	CCGC	2 cut(s)	143, 228
AclWI	GGATC	6 cut(s)	119, 130, 854, 867, 1212, 1238
AcuI	CTGAAG	6 cut(s)	287, 354, 401, 467, 675, 1440
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	54, 166
AflII	CTTAAG	1 cut(s)	1157
AjnI	CCWGG	4 cut(s)	99, 159, 684, 1324
Alw21I	GWGCWC	1 cut(s)	768
Alw26I	GTCTC	3 cut(s)	118, 248, 1315
AlwI	GGATC	6 cut(s)	119, 130, 854, 867, 1212, 1238
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	5 cut(s)	102, 225, 397, 530, 630
ApeKI	GCWGC	9 cut(s)	230, 436, 920, 1150, 1153, 1415, 1472, 1481, 1484
Asp700I	GAANNNNTTC	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	681
AspLEI	GCGC	3 cut(s)	61, 200, 732
AspS9I	GGNCC	4 cut(s)	45, 397, 630, 1329
AsuHPI	GGTGA	1 cut(s)	983
AvaII	GGWCC	2 cut(s)	45, 1329
AxyI	CCTNAGG	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	681
BbsI	GAAGAC	3 cut(s)	335, 782, 1178
Bbv12I	GWGCWC	1 cut(s)	768
BbvI	GCAGC	9 cut(s)	242, 423, 932, 1140, 1162, 1402, 1459, 1468, 1471
BccI	CCATC	5 cut(s)	85, 415, 1015, 1051, 1352
BciT130I	CCWGG	4 cut(s)	101, 161, 686, 1326
BcoDI	GTCTC	3 cut(s)	118, 248, 1315
BfaI	CTAG	1 cut(s)	1448
BfmI	CTRYAG	3 cut(s)	12, 437, 806
BfoI	RGCGCY	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	1157
BfuAI	ACCTGC	1 cut(s)	813
BglII	AGATCT	2 cut(s)	277, 360
Bme1390I	CCNGG	4 cut(s)	101, 161, 686, 1326
Bme18I	GGWCC	2 cut(s)	45, 1329
BmgT120I	GGNCC	4 cut(s)	45, 397, 630, 1329
BmiI	GGNNCC	4 cut(s)	631, 683, 861, 1330
BmrFI	CCNGG	4 cut(s)	101, 161, 686, 1326
BmsI	GCATC	2 cut(s)	209, 757
BpiI	GAAGAC	3 cut(s)	335, 782, 1178
BplI	GAGNNNNNCTC	4 cut(s)	170, 202, 172, 204
BpmI	CTGGAG	1 cut(s)	1334
BpuEI	CTTGAG	3 cut(s)	47, 338, 356
BsaI	GGTCTC	3 cut(s)	118, 248, 1315
BsaJI	CCNNGG	5 cut(s)	249, 393, 465, 1325, 1400
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 166
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	1095, 1317
Bse21I	CCTNAGG	1 cut(s)	594
Bse3DI	GCAATG	2 cut(s)	750, 1431
BseBI	CCWGG	4 cut(s)	101, 161, 686, 1326
BseDI	CCNNGG	5 cut(s)	249, 393, 465, 1325, 1400
BseGI	GGATG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	54, 166
BseMI	GCAATG	2 cut(s)	750, 1431
BseMII	CTCAG	4 cut(s)	203, 585, 681, 942
BseNI	ACTGG	2 cut(s)	1095, 1317
BseRI	GAGGAG	4 cut(s)	773, 776, 1261, 1331
BseSI	GKGCMC	1 cut(s)	30
BseXI	GCAGC	9 cut(s)	242, 423, 932, 1140, 1162, 1402, 1459, 1468, 1471
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	1335
Bsh1236I	CGCG	2 cut(s)	198, 732
BshFI	GGCC	5 cut(s)	104, 227, 399, 532, 632
BshNI	GGYRCC	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	768
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	932, 1342
BslI	CCNNNNNNNGG	2 cut(s)	54, 166
BsmAI	GTCTC	3 cut(s)	118, 248, 1315
BsmFI	GGGAC	2 cut(s)	932, 1342
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	104, 227, 399, 532, 632
Bso31I	GGTCTC	3 cut(s)	118, 248, 1315
Bsp1286I	GDGCHC	2 cut(s)	30, 768
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	2 cut(s)	143, 228
BspANI	GGCC	5 cut(s)	104, 227, 399, 532, 632
BspCNI	CTCAG	4 cut(s)	202, 586, 682, 943
BspFNI	CGCG	2 cut(s)	198, 732
BspLI	GGNNCC	4 cut(s)	631, 683, 861, 1330
BspMAI	CTGCAG	3 cut(s)	16, 441, 810
BspMI	ACCTGC	1 cut(s)	813
BspPI	GGATC	6 cut(s)	119, 130, 854, 867, 1212, 1238
BspQI	GCTCTTC	3 cut(s)	330, 375, 1110
BspT107I	GGYRCC	1 cut(s)	681
BspTI	CTTAAG	1 cut(s)	1157
BspTNI	GGTCTC	3 cut(s)	118, 248, 1315
BsrDI	GCAATG	2 cut(s)	750, 1431
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	1095, 1317
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	5 cut(s)	249, 393, 465, 1325, 1400
BssT1I	CCWWGG	4 cut(s)	249, 393, 465, 1400
Bst2UI	CCWGG	4 cut(s)	101, 161, 686, 1326
Bst4CI	ACNGT	2 cut(s)	246, 946
Bst6I	CTCTTC	9 cut(s)	330, 375, 651, 669, 1011, 1077, 1104, 1110, 1383
BstAFI	CTTAAG	1 cut(s)	1157
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstC8I	GCNNGC	4 cut(s)	106, 534, 918, 1266
BstDEI	CTNAG	4 cut(s)	189, 594, 690, 951
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	2 cut(s)	198, 732
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 200, 732
BstMAI	GTCTC	3 cut(s)	118, 248, 1315
BstNI	CCWGG	4 cut(s)	101, 161, 686, 1326
BstSCI	CCNGG	4 cut(s)	99, 159, 684, 1324
BstSFI	CTRYAG	3 cut(s)	12, 437, 806
BstSLI	GKGCMC	1 cut(s)	30
BstUI	CGCG	2 cut(s)	198, 732
BstV1I	GCAGC	9 cut(s)	242, 423, 932, 1140, 1162, 1402, 1459, 1468, 1471
BstV2I	GAAGAC	3 cut(s)	335, 782, 1178
BstX2I	RGATCY	3 cut(s)	277, 360, 859
BstYI	RGATCY	3 cut(s)	277, 360, 859
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	5 cut(s)	104, 227, 399, 532, 632
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	200
BtsI	GCAGTG	3 cut(s)	9, 648, 1347
BtsIMutI	CAGTG	6 cut(s)	9, 488, 648, 1347, 1352, 1368
BveI	ACCTGC	1 cut(s)	813
Cac8I	GCNNGC	4 cut(s)	106, 534, 918, 1266
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	3 cut(s)	61, 200, 732
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	4 cut(s)	45, 397, 630, 1329
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	4 cut(s)	176, 466, 988, 1139
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	4 cut(s)	189, 594, 690, 951
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
Eam1104I	CTCTTC	9 cut(s)	330, 375, 651, 669, 1011, 1077, 1104, 1110, 1383
EarI	CTCTTC	9 cut(s)	330, 375, 651, 669, 1011, 1077, 1104, 1110, 1383
Eco130I	CCWWGG	4 cut(s)	249, 393, 465, 1400
Eco31I	GGTCTC	3 cut(s)	118, 248, 1315
Eco47I	GGWCC	2 cut(s)	45, 1329
Eco57I	CTGAAG	6 cut(s)	287, 354, 401, 467, 675, 1440
Eco81I	CCTNAGG	1 cut(s)	594
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRII	CCWGG	4 cut(s)	99, 159, 684, 1324
EcoT14I	CCWWGG	4 cut(s)	249, 393, 465, 1400
EcoT22I	ATGCAT	1 cut(s)	750
ErhI	CCWWGG	4 cut(s)	249, 393, 465, 1400
FaeI	CATG	4 cut(s)	179, 469, 991, 1142
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 399, 431
FaqI	GGGAC	2 cut(s)	932, 1342
FatI	CATG	4 cut(s)	175, 465, 987, 1138
FauNDI	CATATG	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	1309
FokI	GGATG	1 cut(s)	187
FspBI	CTAG	1 cut(s)	1448
GlaI	GCGC	3 cut(s)	60, 199, 731
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	1334
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	5 cut(s)	104, 227, 399, 532, 632
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	3 cut(s)	61, 200, 732
Hin1II	CATG	4 cut(s)	179, 469, 991, 1142
Hin6I	GCGC	3 cut(s)	59, 198, 730
HinP1I	GCGC	3 cut(s)	59, 198, 730
HindIII	AAGCTT	4 cut(s)	299, 413, 699, 1089
HinfI	GANTC	1 cut(s)	1306
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	983
Hpy166II	GTNNAC	2 cut(s)	1066, 1310
Hpy188I	TCNGA	3 cut(s)	118, 420, 1209
Hpy188III	TCNNGA	6 cut(s)	81, 271, 305, 364, 518, 580
Hpy8I	GTNNAC	2 cut(s)	1066, 1310
HpyCH4III	ACNGT	2 cut(s)	246, 946
HpyCH4IV	ACGT	2 cut(s)	645, 1006
HpyF3I	CTNAG	4 cut(s)	189, 594, 690, 951
HpySE526I	ACGT	2 cut(s)	645, 1006
Hsp92II	CATG	4 cut(s)	179, 469, 991, 1142
HspAI	GCGC	3 cut(s)	59, 198, 730
KpnI	GGTACC	1 cut(s)	685
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
LguI	GCTCTTC	3 cut(s)	330, 375, 1110
LmnI	GCTCC	2 cut(s)	763, 1343
Lsp1109I	GCAGC	9 cut(s)	242, 423, 932, 1140, 1162, 1402, 1459, 1468, 1471
LweI	GCATC	2 cut(s)	209, 757
MaeI	CTAG	1 cut(s)	1448
MaeII	ACGT	2 cut(s)	645, 1006
MaeIII	GTNAC	2 cut(s)	646, 712
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	3 cut(s)	277, 360, 859
MhlI	GDGCHC	2 cut(s)	30, 768
MluCI	AATT	2 cut(s)	477, 1376
MlyI	GAGTC	1 cut(s)	1315
Mph1103I	ATGCAT	1 cut(s)	750
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	3 cut(s)	1101, 1158, 1188
MspA1I	CMGCKG	1 cut(s)	1153
MspCI	CTTAAG	1 cut(s)	1157
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	4 cut(s)	101, 161, 686, 1326
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	4 cut(s)	101, 161, 686, 1326
MvnI	CGCG	2 cut(s)	198, 732
NaeI	GCCGGC	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	1012
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	4 cut(s)	179, 469, 991, 1142
NlaIV	GGNNCC	4 cut(s)	631, 683, 861, 1330
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	646, 712
NsiI	ATGCAT	1 cut(s)	750
PciSI	GCTCTTC	3 cut(s)	330, 375, 1110
PctI	GAATGC	1 cut(s)	470
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	1314
PpsI	GAGTC	1 cut(s)	1314
Psp6I	CCWGG	4 cut(s)	99, 159, 684, 1324
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	4 cut(s)	99, 159, 684, 1324
PspN4I	GGNNCC	4 cut(s)	631, 683, 861, 1330
PspPI	GGNCC	4 cut(s)	45, 397, 630, 1329
PstI	CTGCAG	3 cut(s)	16, 441, 810
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	277, 360, 859
PvuII	CAGCTG	1 cut(s)	1153
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SapI	GCTCTTC	3 cut(s)	330, 375, 1110
SaqAI	TTAA	3 cut(s)	1101, 1158, 1188
Sau96I	GGNCC	4 cut(s)	45, 397, 630, 1329
SchI	GAGTC	1 cut(s)	1315
ScrFI	CCNGG	4 cut(s)	101, 161, 686, 1326
SduI	GDGCHC	2 cut(s)	30, 768
SfaNI	GCATC	2 cut(s)	209, 757
SfcI	CTRYAG	3 cut(s)	12, 437, 806
SinI	GGWCC	2 cut(s)	45, 1329
SmlI	CTYRAG	4 cut(s)	62, 317, 371, 1157
SmoI	CTYRAG	4 cut(s)	62, 317, 371, 1157
Sse9I	AATT	2 cut(s)	477, 1376
SsiI	CCGC	2 cut(s)	143, 228
SspMI	CTAG	1 cut(s)	1448
StyD4I	CCNGG	4 cut(s)	99, 159, 684, 1324
StyI	CCWWGG	4 cut(s)	249, 393, 465, 1400
TaaI	ACNGT	2 cut(s)	246, 946
TaiI	ACGT	2 cut(s)	648, 1009
TaqI	TCGA	5 cut(s)	52, 156, 215, 221, 270
TasI	AATT	2 cut(s)	477, 1376
TauI	GCSGC	1 cut(s)	230
Tru1I	TTAA	3 cut(s)	1101, 1158, 1188
Tru9I	TTAA	3 cut(s)	1101, 1158, 1188
TscAI	CASTG	6 cut(s)	16, 495, 655, 1354, 1359, 1368
TseFI	GTSAC	2 cut(s)	646, 712
TseI	GCWGC	9 cut(s)	230, 436, 920, 1150, 1153, 1415, 1472, 1481, 1484
Tsp45I	GTSAC	2 cut(s)	646, 712
TspDTI	ATGAA	5 cut(s)	102, 687, 1029, 1139, 1155
TspRI	CASTG	6 cut(s)	16, 495, 655, 1354, 1359, 1368
Vha464I	CTTAAG	1 cut(s)	1157
VpaK11BI	GGWCC	2 cut(s)	45, 1329
XagI	CCTNNNNNAGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	1309
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	1 cut(s)	1448
Zsp2I	ATGCAT	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.