MD06G1103000.v1.1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014151
Physical Location & Seq
Forward (+)
23985096 .. 23987832
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1103000.v1.1.491

Sequence Viewer

Length: 1503 bp
ATGGCTGACACTGCAATCGCCGAAATGCCCAACAGGAAGCCAAGGGCCAGCCGAAGGGCACTCAAGGACAAAAACCCATCTGGAAATTCAGCCAATATCCTCGCAGGAAAGGTCTCGGACGCCACTCCGAGCCCAATCCAAACACCATCGGACTCCAACCCAGCGAAGGAGAACCACGAGAGTCTCTCTCAGACTCGCACCTCCCCCAAGAAGTCGGCCAAAGCTGCGGCTTCTAAGAAACAGGCCAAGCAGAAGAAGACCCAACCGTCGTCATTCGAGAAAGAACTCGAAGAAATGCAAGAGAAGCTGCAAGCGATGAAGCTTGAGAAGGAGAAAACCGAGGAGCTCCTGAAGGAGAAGGATGAGATCTTGAAGACCAAGGAGGAAGATCTCGCAATGAAGGGCCGAGAGCAAGACAAGCTTCAGATGGAGTTAAAGAAGCTGCAGAAGATCAAGGAGTTCAAACCCACCATGGCATTCCCAATTGCTCAACCAGTGCAAGACAAGAAAAAGAAGGGTTGCCCTGAGAAGAAAAGGCCAGCTCCTGCTTACATCTTATGGTGCAAAGATCAATGGGCTGAGATCAAGAAGGAGAACCCTGAAGCAGATTTTAAGGAAGTCTCAAACATTTTGGGGGCCAAGTGGAAGAACGTCAGTGCTGAAGAGAAGAAGCCTTACGAAGAGAGGTACCAGGCCGAGAAGGAAGCTTACCTGAAAGTGACTACAAAAGAGAAGCGCGAGGTGGAAGCAATGCATCTCTTGGAGGAGGAGAACAAGCAGAAGACAGCTATGGAGTTGCTTGAACAATACCTACAGTTCAAGCAAGAAGCCGAAATGGAGAACAAGAAAACCAAGAAGGAAAAGGATCCATTGAAACCCAAGCATCCAATGTCGGCATTTTTTCTGTTCACAAACGACAGGCGACCAGCTCTGGCTGCAGAGAACAAAACTGTCACTGAGGTTGCAAAGATCACGGGTGAAGAATGGAAAAACATGACGGAGGTGCAAAAATTGCCGTATGAGGAGATGGCTAGGAAGAACAAGGAGAAGTATATGCAAGAGATGGAGGTTTACAAGCAGAATAAGGAAGAGGAAGCTTCCAATCTCAAAAAGGAAGAGGAAGAGCTGATGAAACTGCAAAAGCATGAAGCCTTGCAGCTTCTCAAGAAGAAGGAGAAGACTGAAAACATAATCAAGAAAACGAAGGAGGAGCAGAAGAAAAAGAAGAAGGAAGACATGAAGAATGTTGACCCCAACAAGCCCAAGAAGCCTGCATCCTCTTACCTCTTGTTCAGCAAGGAAGCAAGAAAGGCTCTGTTGGAGGAGAGACCAGGGACTAACAGCACCACCATTACTGCAATGATTTCACTGAAATGGAGGGAAATGAAGGAAGAAGAGAAAAAGGGTTGGAATGAGAAGGCAGCTGAAGCAATGCAAGCATACAAGAAGGAGGTAGAGGAATATAACAAAAGTGCTGCTGCTGCATCTACCTCTGTTAATTGA

Protein Analysis

501

Amino Acids

57.98

Weight (kDa)

9.3

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 175 - 239 2.7e-13 HMG-box domain
HMG_box PF00505 178 - 239 1.3e-18 HMG (high mobility group) box
HMG_box_2 PF09011 290 - 358 1.2e-14 HMG-box domain
HMG_box PF00505 293 - 359 4.3e-18 HMG (high mobility group) box
HMG_box_2 PF09011 418 - 489 2.1e-11 HMG-box domain
HMG_box PF00505 421 - 489 1.3e-15 HMG (high mobility group) box
HMG_WDHD1 PF24815 424 - 473 7.5e-06 WDHD1 HMG box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11080 AT4G23800 AT4G23800
fragaria_vesca FvH4_5g04120 FvH4_5g04120
malus_domestica MD06G1103000.v1.1 MD14G1121900.v1.1
prunus_persica Prupe.5G115800_v2.0.a1
pyrus_communis pycom06g09760
rosa_chinensis RchiOBHm_Chr7g0195371
rosa_multiflora Rmu_sc0007366.1_g000005
rosa_roxburghii Rroxscaffold_3G00260530
rosa_rugosa Rorug07G0022800
rosa_samantha Rh7AG150100 Rh7BG151600 Rh7DG151200
rosa_wichuraiana Rw7G012810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 687
AccII CGCG 1 cut(s) 738
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 860, 873
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 5 cut(s) 371, 407, 621, 681, 1446
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 2 cut(s) 54, 166
AgsI TTSAA 5 cut(s) 373, 463, 803, 820, 874
AjnI CCWGG 2 cut(s) 690, 1330
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 4 cut(s) 118, 188, 625, 1321
AlwI GGATC 2 cut(s) 860, 873
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 7 cut(s) 45, 216, 243, 403, 536, 636, 693
ApeKI GCWGC 9 cut(s) 224, 307, 442, 935, 1156, 1421, 1475, 1478, 1481
ApoI RAATTY 1 cut(s) 85
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 3 cut(s) 45, 403, 636
AsuHPI GGTGA 1 cut(s) 989
BaeGI GKGCMC 1 cut(s) 61
BamHI GGATCC 1 cut(s) 865
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 2 cut(s) 134, 348
BarI GAAGNNNNNNTAC 4 cut(s) 659, 691, 692, 724
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 5 cut(s) 263, 380, 788, 1184, 1239
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 9 cut(s) 211, 294, 429, 922, 1168, 1433, 1462, 1465, 1468
BccI CCATC 5 cut(s) 85, 154, 421, 1021, 1057
BceAI ACGGC 1 cut(s) 1000
BciT130I CCWGG 2 cut(s) 692, 1332
BcoDI GTCTC 4 cut(s) 118, 188, 625, 1321
BfaI CTAG 1 cut(s) 1032
BfmI CTRYAG 3 cut(s) 443, 812, 936
BglII AGATCT 2 cut(s) 366, 388
Bme1390I CCNGG 2 cut(s) 692, 1332
BmgT120I GGNCC 3 cut(s) 45, 403, 636
BmiI GGNNCC 3 cut(s) 637, 689, 867
BmrFI CCNGG 2 cut(s) 692, 1332
BmsI GCATC 4 cut(s) 763, 892, 1283, 1493
BpiI GAAGAC 5 cut(s) 263, 380, 788, 1184, 1239
BplI GAGNNNNNCTC 4 cut(s) 170, 202, 172, 204
BpuEI CTTGAG 3 cut(s) 47, 344, 1148
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 2 cut(s) 118, 1321
BsaJI CCNNGG 5 cut(s) 41, 339, 378, 471, 1331
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 166
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 4 cut(s) 402, 756, 1365, 1437
BseBI CCWGG 2 cut(s) 692, 1332
BseDI CCNNGG 5 cut(s) 41, 339, 378, 471, 1331
BseGI GGATG 3 cut(s) 367, 883, 1274
BseLI CCNNNNNNNGG 2 cut(s) 54, 166
BseMI GCAATG 4 cut(s) 402, 756, 1365, 1437
BseMII CTCAG 4 cut(s) 203, 516, 570, 948
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 6 cut(s) 356, 779, 782, 1037, 1223, 1337
BseSI GKGCMC 1 cut(s) 61
BseXI GCAGC 9 cut(s) 211, 294, 429, 922, 1168, 1433, 1462, 1465, 1468
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 7 cut(s) 47, 218, 245, 405, 538, 638, 695
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 1348
BslI CCNNNNNNNGG 2 cut(s) 54, 166
BsmAI GTCTC 4 cut(s) 118, 188, 625, 1321
BsmFI GGGAC 1 cut(s) 1348
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 7 cut(s) 47, 218, 245, 405, 538, 638, 695
Bso31I GGTCTC 2 cut(s) 118, 1321
Bsp1286I GDGCHC 3 cut(s) 61, 134, 348
Bsp143I GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 1 cut(s) 227
BspANI GGCC 7 cut(s) 47, 218, 245, 405, 538, 638, 695
BspCNI CTCAG 4 cut(s) 202, 517, 571, 949
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 3 cut(s) 637, 689, 867
BspMAI CTGCAG 2 cut(s) 447, 940
BspPI GGATC 2 cut(s) 860, 873
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 1 cut(s) 687
BspTNI GGTCTC 2 cut(s) 118, 1321
BsrDI GCAATG 4 cut(s) 402, 756, 1365, 1437
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 5 cut(s) 41, 339, 378, 471, 1331
BssMI GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 3 cut(s) 41, 378, 471
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 692, 1332
Bst4CI ACNGT 3 cut(s) 267, 816, 952
Bst6I CTCTTC 6 cut(s) 657, 675, 1083, 1110, 1116, 1389
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 1012
BstC8I GCNNGC 5 cut(s) 49, 312, 540, 1272, 1437
BstDEI CTNAG 5 cut(s) 189, 234, 525, 579, 957
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 3 cut(s) 367, 883, 1274
BstFNI CGCG 1 cut(s) 738
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 7 cut(s) 369, 391, 453, 571, 585, 868, 972
BstMAI GTCTC 4 cut(s) 118, 188, 625, 1321
BstMBI GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
BstNI CCWGG 2 cut(s) 692, 1332
BstSCI CCNGG 2 cut(s) 690, 1330
BstSFI CTRYAG 3 cut(s) 443, 812, 936
BstSLI GKGCMC 1 cut(s) 61
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 9 cut(s) 211, 294, 429, 922, 1168, 1433, 1462, 1465, 1468
BstV2I GAAGAC 5 cut(s) 263, 380, 788, 1184, 1239
BstX2I RGATCY 3 cut(s) 366, 388, 865
BstYI RGATCY 3 cut(s) 366, 388, 865
BsuRI GGCC 7 cut(s) 47, 218, 245, 405, 538, 638, 695
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 367, 883, 1274
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 5 cut(s) 9, 501, 661, 954, 1367
Cac8I GCNNGC 5 cut(s) 49, 312, 540, 1272, 1437
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 1 cut(s) 738
Cfr13I GGNCC 3 cut(s) 45, 403, 636
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 688
CviAII CATG 4 cut(s) 472, 994, 1145, 1237
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 5 cut(s) 189, 234, 525, 579, 957
DpnI GATC 7 cut(s) 368, 390, 452, 570, 584, 867, 971
DpnII GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
DrdI GACNNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 6 cut(s) 657, 675, 1083, 1110, 1116, 1389
EarI CTCTTC 6 cut(s) 657, 675, 1083, 1110, 1116, 1389
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 3 cut(s) 41, 378, 471
Eco24I GRGCYC 2 cut(s) 134, 348
Eco31I GGTCTC 2 cut(s) 118, 1321
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 5 cut(s) 371, 407, 621, 681, 1446
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 690, 1330
EcoT14I CCWWGG 3 cut(s) 41, 378, 471
EcoT22I ATGCAT 1 cut(s) 756
EcoT38I GRGCYC 2 cut(s) 134, 348
ErhI CCWWGG 3 cut(s) 41, 378, 471
FaeI CATG 4 cut(s) 475, 997, 1148, 1240
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 1348
FatI CATG 4 cut(s) 471, 993, 1144, 1236
FokI GGATG 3 cut(s) 374, 870, 1261
FriOI GRGCYC 2 cut(s) 134, 348
FspBI CTAG 1 cut(s) 1032
GlaI GCGC 1 cut(s) 737
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 7 cut(s) 47, 218, 245, 405, 538, 638, 695
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 738
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 475, 997, 1148, 1240
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 4 cut(s) 320, 419, 705, 1095
HinfI GANTC 3 cut(s) 152, 181, 193
HphI GGTGA 1 cut(s) 989
Hpy166II GTNNAC 3 cut(s) 909, 1072, 1249
Hpy188I TCNGA 5 cut(s) 118, 129, 151, 192, 426
Hpy188III TCNNGA 7 cut(s) 81, 277, 349, 370, 586, 1165, 1195
Hpy8I GTNNAC 3 cut(s) 909, 1072, 1249
Hpy99I CGWCG 1 cut(s) 271
HpyCH4III ACNGT 3 cut(s) 267, 816, 952
HpyCH4IV ACGT 1 cut(s) 651
HpyF3I CTNAG 5 cut(s) 189, 234, 525, 579, 957
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 475, 997, 1148, 1240
HspAI GCGC 1 cut(s) 736
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 4 cut(s) 343, 351, 547, 1210
Lsp1109I GCAGC 9 cut(s) 211, 294, 429, 922, 1168, 1433, 1462, 1465, 1468
LweI GCATC 4 cut(s) 763, 892, 1283, 1493
MaeI CTAG 1 cut(s) 1032
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 2 cut(s) 718, 952
MalI GATC 7 cut(s) 368, 390, 452, 570, 584, 867, 971
MboI GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 3 cut(s) 366, 388, 865
MhlI GDGCHC 3 cut(s) 61, 134, 348
MluCI AATT 4 cut(s) 85, 483, 1010, 1498
MlyI GAGTC 3 cut(s) 146, 187, 190
MmeI TCCRAC 3 cut(s) 180, 1299, 1388
Mph1103I ATGCAT 1 cut(s) 756
MseI TTAA 3 cut(s) 434, 612, 1497
MslI CAYNNNNRTG 1 cut(s) 1372
MspA1I CMGCKG 1 cut(s) 1424
MspR9I CCNGG 2 cut(s) 692, 1332
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 2 cut(s) 692, 1332
MvnI CGCG 1 cut(s) 738
NcoI CCATGG 1 cut(s) 471
NdeII GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
NlaIII CATG 4 cut(s) 475, 997, 1148, 1240
NlaIV GGNNCC 3 cut(s) 637, 689, 867
NmeAIII GCCGAG 2 cut(s) 431, 721
NmuCI GTSAC 2 cut(s) 718, 952
NsiI ATGCAT 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 1116
PctI GAATGC 1 cut(s) 476
PleI GAGTC 3 cut(s) 146, 187, 189
PpsI GAGTC 3 cut(s) 146, 187, 189
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 690, 1330
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 690, 1330
PspN4I GGNNCC 3 cut(s) 637, 689, 867
PspPI GGNCC 3 cut(s) 45, 403, 636
PsrI GAACNNNNNNTAC 2 cut(s) 795, 827
PstI CTGCAG 2 cut(s) 447, 940
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 3 cut(s) 366, 388, 865
PvuII CAGCTG 1 cut(s) 1424
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 1 cut(s) 1372
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 3 cut(s) 434, 612, 1497
Sau3AI GATC 7 cut(s) 366, 388, 450, 568, 582, 865, 969
Sau96I GGNCC 3 cut(s) 45, 403, 636
SchI GAGTC 3 cut(s) 146, 187, 190
ScrFI CCNGG 2 cut(s) 692, 1332
SduI GDGCHC 3 cut(s) 61, 134, 348
SfaNI GCATC 4 cut(s) 763, 892, 1283, 1493
SfcI CTRYAG 3 cut(s) 443, 812, 936
SmiMI CAYNNNNRTG 1 cut(s) 1372
SmlI CTYRAG 3 cut(s) 62, 323, 1163
SmoI CTYRAG 3 cut(s) 62, 323, 1163
Sse9I AATT 4 cut(s) 85, 483, 1010, 1498
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 1032
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 690, 1330
StyI CCWWGG 3 cut(s) 41, 378, 471
TaaI ACNGT 3 cut(s) 267, 816, 952
TaiI ACGT 1 cut(s) 654
TaqI TCGA 2 cut(s) 276, 288
TasI AATT 4 cut(s) 85, 483, 1010, 1498
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 434, 612, 1497
Tru9I TTAA 3 cut(s) 434, 612, 1497
TscAI CASTG 5 cut(s) 16, 501, 661, 961, 1374
TseFI GTSAC 2 cut(s) 718, 952
TseI GCWGC 9 cut(s) 224, 307, 442, 935, 1156, 1421, 1475, 1478, 1481
Tsp45I GTSAC 2 cut(s) 718, 952
TspDTI ATGAA 6 cut(s) 332, 413, 1145, 1161, 1253, 1400
TspGWI ACGGA 1 cut(s) 1013
TspRI CASTG 5 cut(s) 16, 501, 661, 961, 1374
XapI RAATTY 1 cut(s) 85
XspI CTAG 1 cut(s) 1032
Zsp2I ATGCAT 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.