MD14G1121900.v1.1

High mobility group B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014151
Physical Location & Seq
Forward (+)
19669120 .. 19670588
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1121900.v1.1.491

Sequence Viewer

Length: 912 bp
ATGCGAAACACATTCCGAATCCGCTTGTGGTTTTTGATGCAGATCAAGAAGGAGAACCCTGAGGCAGATTTTAAGGAAGTCTCAAACATTTTGGGGGCCAAGTGGAAGAACTTCAGCCCCGAAGAGAAGAGGCCTTACGAAGAGAGGTACCAGGTTGAAAAGGAAGCTTATCTGCAAGTGACTGCGAAAGAGAAGAGTGAGGTTGAAGCAATGTATCTTTTGGAGGATGAGCACAAGCAGAAGATGGCTATGGAGTTACTTGAACAATATATGCGGTTCAAGCAAGAAGCCAAAAAGGAGAACAAGAAATCCAAGGAAAAGGATCCATCGAAACCCAAGCATCCAATGTCGGCTTTTTTTCTGTTCACAAACGGCAGGCGACCGGCTCTGGCTGCAGAGAACAAAACTGTCACTGAGATTGCAAAGATCACTGGTGAGGAATGGAAAAACATGACAGAGGAACAAAAATTGCCGTATGAAGAGATGACTAGGAAGAACAAGGAGAAGTATATTCAAGAGATGGAGGCTTACAAGGAGATGAAGGAAGAGGAAGCTTCCAATCTCAAAAAGGAAAAGCATGAAGTCTTGCAGCTGCTTAAGAAGAAGGAGAAGACTGAAAATATTATCAAGGAGGAGCAGAAGAAGAAGAAGAAGGAAGAAAAGAAGAAGCCCAAGAGGCCTGCATCCTCTTACCTCTTGTTTAGCAAGGAAGCAAGAAAGGCTCTTTTGGAGGAGAGACCAGGGACTAACAGCACCACCATCACTGCAATGATTTCATTGAAATGGAAGGAAATGAAGGAAGAAGAGAAAAAGGTATGGAATGAAAACGCAGCTGAAGCAATGGAAGCATACAAGAAGGAGGTATTGGAACATAACAAAAGTGTTGTTGCCGCATCTTCCTCCGCTTATTGA

Protein Analysis

304

Amino Acids

36.1

Weight (kDa)

9.24

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box PF00505 12 - 59 7.4e-12 HMG (high mobility group) box
HMG_box_2 PF09011 14 - 59 4.9e-07 HMG-box domain
HMG_box_2 PF09011 109 - 177 1.5e-13 HMG-box domain
HMG_box PF00505 112 - 178 2.9e-18 HMG (high mobility group) box
HMG_box_2 PF09011 222 - 291 8.9e-11 HMG-box domain
HMG_box PF00505 224 - 288 2.8e-15 HMG (high mobility group) box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014151)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11080 AT4G23800 AT4G23800
fragaria_vesca FvH4_5g04120 FvH4_5g04120
malus_domestica MD06G1103000.v1.1 MD14G1121900.v1.1
prunus_persica Prupe.5G115800_v2.0.a1
pyrus_communis pycom06g09760
rosa_chinensis RchiOBHm_Chr7g0195371
rosa_multiflora Rmu_sc0007366.1_g000005
rosa_roxburghii Rroxscaffold_3G00260530
rosa_rugosa Rorug07G0022800
rosa_samantha Rh7AG150100 Rh7BG151600 Rh7DG151200
rosa_wichuraiana Rw7G012810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 4 cut(s) 22, 274, 891, 903
AclWI GGATC 2 cut(s) 317, 330
AcuI CTGAAG 2 cut(s) 97, 855
AfaI GTAC 1 cut(s) 149
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 6 cut(s) 158, 206, 263, 280, 515, 781
AjnI CCWGG 2 cut(s) 150, 739
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AloI GAACNNNNNNTCC 2 cut(s) 293, 325
AluBI AGCT 4 cut(s) 167, 554, 592, 833
AluI AGCT 4 cut(s) 167, 554, 592, 833
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 2 cut(s) 85, 730
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 3 cut(s) 96, 131, 677
ApeKI GCWGC 4 cut(s) 392, 589, 592, 830
Asp700I GAANNNNTTC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 60
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 147
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 379, 579, 601, 842
BccI CCATC 4 cut(s) 238, 334, 514, 767
BceAI ACGGC 2 cut(s) 388, 457
BciT130I CCWGG 2 cut(s) 152, 741
BcoDI GTCTC 2 cut(s) 85, 730
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 393
BfrI CTTAAG 1 cut(s) 596
BglI GCCNNNNNGGC 1 cut(s) 676
BisI GCNGC 5 cut(s) 393, 590, 593, 831, 891
BlsI GCNGC 5 cut(s) 394, 591, 594, 832, 892
Bme1390I CCNGG 2 cut(s) 152, 741
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 3 cut(s) 97, 149, 324
BmrFI CCNGG 2 cut(s) 152, 741
BmsI GCATC 4 cut(s) 27, 349, 692, 902
BpiI GAAGAC 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 730
BsaJI CCNNGG 2 cut(s) 312, 740
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 436
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 3 cut(s) 216, 774, 846
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 2 cut(s) 152, 741
BseDI CCNNGG 2 cut(s) 312, 740
BseGI GGATG 3 cut(s) 232, 340, 683
BseJI GATNNNNATC 1 cut(s) 41
BseMI GCAATG 3 cut(s) 216, 774, 846
BseMII CTCAG 2 cut(s) 51, 405
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 647, 746
BseXI GCAGC 4 cut(s) 379, 579, 601, 842
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 3 cut(s) 98, 133, 679
BshNI GGYRCC 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 383
BslFI GGGAC 1 cut(s) 757
BsmAI GTCTC 2 cut(s) 85, 730
BsmFI GGGAC 1 cut(s) 757
BsnI GGCC 3 cut(s) 98, 133, 679
Bso31I GGTCTC 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 42, 322, 426
BspACI CCGC 4 cut(s) 22, 274, 891, 903
BspANI GGCC 3 cut(s) 98, 133, 679
BspCNI CTCAG 2 cut(s) 52, 406
BspLI GGNNCC 3 cut(s) 97, 149, 324
BspMAI CTGCAG 1 cut(s) 397
BspPI GGATC 2 cut(s) 317, 330
BspT107I GGYRCC 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 1 cut(s) 730
BsrDI GCAATG 3 cut(s) 216, 774, 846
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 312, 740
BssMI GATC 3 cut(s) 42, 322, 426
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 152, 741
Bst4CI ACNGT 1 cut(s) 409
Bst6I CTCTTC 7 cut(s) 117, 122, 135, 188, 474, 540, 798
BstAFI CTTAAG 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 377, 681
BstDEI CTNAG 2 cut(s) 60, 414
BstF5I GGATG 3 cut(s) 232, 340, 683
BstKTI GATC 3 cut(s) 45, 325, 429
BstMAI GTCTC 2 cut(s) 85, 730
BstMBI GATC 3 cut(s) 42, 322, 426
BstMCI CGRYCG 1 cut(s) 383
BstMWI GCNNNNNNNGC 6 cut(s) 280, 392, 676, 719, 836, 845
BstNI CCWGG 2 cut(s) 152, 741
BstSCI CCNGG 2 cut(s) 150, 739
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 379, 579, 601, 842
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 98, 133, 679
BtsCI GGATG 3 cut(s) 232, 340, 683
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 3 cut(s) 411, 429, 762
Cac8I GCNNGC 2 cut(s) 377, 681
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 451, 578
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 60, 414
DpnI GATC 3 cut(s) 44, 324, 428
DpnII GATC 3 cut(s) 42, 322, 426
Eam1104I CTCTTC 7 cut(s) 117, 122, 135, 188, 474, 540, 798
EarI CTCTTC 7 cut(s) 117, 122, 135, 188, 474, 540, 798
Eco130I CCWWGG 1 cut(s) 312
Eco147I AGGCCT 2 cut(s) 133, 679
Eco31I GGTCTC 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 97, 855
Eco81I CCTNAGG 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 150, 739
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 2 cut(s) 454, 581
FaqI GGGAC 1 cut(s) 757
FatI CATG 2 cut(s) 450, 577
Fnu4HI GCNGC 5 cut(s) 393, 590, 593, 831, 891
FokI GGATG 3 cut(s) 239, 327, 670
Fsp4HI GCNGC 5 cut(s) 393, 590, 593, 831, 891
FspBI CTAG 1 cut(s) 489
GluI GCNGC 5 cut(s) 393, 590, 593, 831, 891
HaeIII GGCC 3 cut(s) 98, 133, 679
HapII CCGG 1 cut(s) 383
Hin1II CATG 2 cut(s) 454, 581
HindIII AAGCTT 2 cut(s) 165, 552
HinfI GANTC 1 cut(s) 18
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 46, 515
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 7 cut(s) 43, 535, 598, 646, 781, 790, 850
HpyCH4III ACNGT 1 cut(s) 409
HpyCH4V TGCA 7 cut(s) 40, 175, 395, 422, 589, 683, 767
HpyF10VI GCNNNNNNNGC 6 cut(s) 280, 392, 676, 719, 836, 845
HpyF3I CTNAG 2 cut(s) 60, 414
Hsp92II CATG 2 cut(s) 454, 581
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 42, 322, 426
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 4 cut(s) 379, 579, 601, 842
LweI GCATC 4 cut(s) 27, 349, 692, 902
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 3 cut(s) 178, 255, 409
MalI GATC 3 cut(s) 44, 324, 428
MboI GATC 3 cut(s) 42, 322, 426
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 72, 597
MslI CAYNNNNRTG 2 cut(s) 767, 781
MspA1I CMGCKG 2 cut(s) 592, 833
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 152, 741
MvaI CCWGG 2 cut(s) 152, 741
MwoI GCNNNNNNNGC 6 cut(s) 280, 392, 676, 719, 836, 845
NdeII GATC 3 cut(s) 42, 322, 426
NlaIII CATG 2 cut(s) 454, 581
NlaIV GGNNCC 3 cut(s) 97, 149, 324
NmuCI GTSAC 2 cut(s) 178, 409
PceI AGGCCT 2 cut(s) 133, 679
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 5 cut(s) 394, 591, 594, 832, 892
Psp6I CCWGG 2 cut(s) 150, 739
PspGI CCWGG 2 cut(s) 150, 739
PspN4I GGNNCC 3 cut(s) 97, 149, 324
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 2 cut(s) 592, 833
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 767, 781
SaqAI TTAA 2 cut(s) 72, 597
SatI GCNGC 5 cut(s) 393, 590, 593, 831, 891
Sau3AI GATC 3 cut(s) 42, 322, 426
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 152, 741
SduI GDGCHC 1 cut(s) 234
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 4 cut(s) 27, 349, 692, 902
SfcI CTRYAG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 767, 781
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 1 cut(s) 467
SseBI AGGCCT 2 cut(s) 133, 679
SsiI CCGC 4 cut(s) 22, 274, 891, 903
SspI AATATT 1 cut(s) 622
SspMI CTAG 1 cut(s) 489
StuI AGGCCT 2 cut(s) 133, 679
StyD4I CCNGG 2 cut(s) 150, 739
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 329
TasI AATT 1 cut(s) 467
TauI GCSGC 1 cut(s) 893
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 2 cut(s) 72, 597
Tru9I TTAA 2 cut(s) 72, 597
TscAI CASTG 3 cut(s) 418, 436, 769
TseFI GTSAC 2 cut(s) 178, 409
TseI GCWGC 4 cut(s) 392, 589, 592, 830
Tsp45I GTSAC 2 cut(s) 178, 409
TspDTI ATGAA 6 cut(s) 492, 554, 594, 765, 809, 837
TspRI CASTG 3 cut(s) 418, 436, 769
Vha464I CTTAAG 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.