AT4G24275

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017198
Physical Location & Seq
Forward (+)
12588378 .. 12589277
900 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24275.1

Sequence Viewer

Length: 381 bp
ATGAGTGGCTATTCCAAGATGGATTCAACAGACCAGAAACTTGAGCCGGACCACCCGGTGGTCGATCCTCAGATTCAGAAGCCCGATCTTGAACCTGCTGAAATGAAACCGAAGCTGAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGGTTCCTTCACCAATAAAGATGTCTATGAGAAGATCTTCGTCTGTCTCTGAACGCTACTGTAGAATCTATGACCAGAGCTCTGCCACGACTTGGCCGCTTCCTTTCCATGAAGGAGATGAAGACGAAGATGATGATGATAAAGAGAAGGTGCACAAGAAGAAGAAGAGCAACAACTTCAAGAAAAAAGCATTCGTAAAGGCTTGTAAGCGTTTTTTTGGGATCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

9.04

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24275
fragaria_vesca FvH4_5g28660
prunus_persica Prupe.1G579700_v2.0.a1
pyrus_communis pycom08g21010
rosa_chinensis RchiOBHm_Chr7g0220641
rosa_laevigata RLG00000002213
rosa_multiflora Rmu_ssc0000189.1_g000015
rosa_rugosa Rorug07G0195400
rosa_samantha Rh7AG336600 Rh7BG327500 Rh7CG354400 Rh7DG332900
rosa_wichuraiana Rw7G028700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 103
AccB7I CCANNNNNTGG 2 cut(s) 58, 243
AciI CCGC 2 cut(s) 152, 248
AclWI GGATC 2 cut(s) 59, 380
AcoI YGGCCR 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 58, 243
AgsI TTSAA 3 cut(s) 27, 92, 331
AluBI AGCT 2 cut(s) 115, 231
AluI AGCT 2 cut(s) 115, 231
Alw21I GWGCWC 2 cut(s) 233, 306
Alw26I GTCTC 1 cut(s) 202
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 2 cut(s) 59, 380
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 245
ApaLI GTGCAC 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 153
AvaII GGWCC 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 233
BauI CACGAG 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 2 cut(s) 233, 306
BccI CCATC 1 cut(s) 13
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 185
BisI GCNGC 1 cut(s) 248
BlpI GCTNAGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 279
Bpu1102I GCTNAGC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 243
BseLI CCNNNNNNNGG 2 cut(s) 58, 243
BseMII CTCAG 2 cut(s) 83, 107
BseSI GKGCMC 1 cut(s) 306
BshFI GGCC 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 233, 306
BsiSI CCGG 2 cut(s) 47, 56
BslI CCNNNNNNNGG 2 cut(s) 58, 243
BsmAI GTCTC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 233, 306
Bsp143I GATC 4 cut(s) 64, 85, 185, 372
Bsp1720I GCTNAGC 1 cut(s) 116
BspACI CCGC 2 cut(s) 152, 248
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 2 cut(s) 82, 108
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 2 cut(s) 59, 380
BspQI GCTCTTC 1 cut(s) 311
BssMI GATC 4 cut(s) 64, 85, 185, 372
BssSI CACGAG 1 cut(s) 376
Bst2BI CACGAG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 69, 116
BstKTI GATC 4 cut(s) 67, 88, 188, 375
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 64, 85, 185, 372
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 185, 372
BstYI RGATCY 2 cut(s) 185, 372
BsuRI GGCC 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 1 cut(s) 260
CviJI RGCY 7 cut(s) 9, 46, 82, 115, 231, 247, 353
CviKI_1 RGCY 7 cut(s) 9, 46, 82, 115, 231, 247, 353
DdeI CTNAG 2 cut(s) 69, 116
DpnI GATC 4 cut(s) 66, 87, 187, 374
DpnII GATC 4 cut(s) 64, 85, 185, 372
DraIII CACNNNGTG 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 233
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 179, 222, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 47, 56
Hin1II CATG 1 cut(s) 263
HinfI GANTC 3 cut(s) 23, 73, 216
HpaII CCGG 2 cut(s) 47, 56
HphI GGTGA 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 72, 78, 202
Hpy188III TCNNGA 3 cut(s) 89, 331, 378
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 168, 257, 292
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 2 cut(s) 140, 304
HpyF3I CTNAG 2 cut(s) 69, 116
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 4 cut(s) 64, 85, 185, 372
LguI GCTCTTC 1 cut(s) 311
LpnPI CCDG 7 cut(s) 47, 60, 69, 106, 108, 112, 239
LweI GCATC 1 cut(s) 149
MalI GATC 4 cut(s) 66, 87, 187, 374
MboI GATC 4 cut(s) 64, 85, 185, 372
MboII GAAGA 7 cut(s) 180, 195, 284, 290, 322, 325, 328
MflI RGATCY 2 cut(s) 185, 372
MhlI GDGCHC 2 cut(s) 233, 306
MnlI CCTC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 187
MspI CCGG 2 cut(s) 47, 56
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 56
NdeII GATC 4 cut(s) 64, 85, 185, 372
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 311
PctI GAATGC 1 cut(s) 341
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 23, 73, 216
PflMI CCANNNNNTGG 2 cut(s) 58, 243
PkrI GCNGC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 2 cut(s) 185, 372
SacI GAGCTC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 311
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 4 cut(s) 64, 85, 185, 372
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 233, 306
SetI ASST 5 cut(s) 97, 117, 131, 233, 303
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 2 cut(s) 152, 248
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 63
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 3 cut(s) 23, 73, 216
TscAI CASTG 1 cut(s) 138
TspDTI ATGAA 3 cut(s) 119, 276, 285
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 2 cut(s) 58, 243
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.