Rh7CG354400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017198
Physical Location & Seq
Reverse (-)
40647313 .. 40649136
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG354400.1

Sequence Viewer

Length: 621 bp
ATGGATGGGGGATATTCCAAGATCAATATCATTCACCGCCAGAATTCAAGATCCATGGATTTTTCAGATCTTGGATCCAAAACACAGTCAGAAAGCAATCTACAGATCAAGGACAAGATCGACTACACCAGTTCCAACAAACAAGAAGACGATGAGATGCAGCATCAAGAGAGGAAGTTTGGTAATGGTAATGGCAGTCATGTGGTATTGAAAAGGAACTGCTCAGTCTCTTCTTCGTCTTCTGGGTTTCAAACTGCAGTGAAAGGAGCAATATCGTCAATGAGAAGATCTTCCTCTACAGTTTCAGAAAGGTATTCCAGGATTCATGACCAGTCTGTAACATGCATTGACCATCATGATGGGGACGAAGAAGGTGATTGGGGGACAACAACAAGATCTAATAGGAAGAGGCATAATGGAGGCAAGATCCTTAAAGCCTGTGAAGTATGCAAAAGGACGTTCTTAAATTCCTGGGGTGCATTTCACTTCTTTCAGGACGTCCCTTCCTCACCAACACAAGTACAGCAGAATAGGGTAGGAATCGGTCATTATGACAACCCCAAACAGAAGGCAAGATCCAACAGGAAAAGAAAATCCGTAGCTATCAAAGCTCTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

9.72

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24275
fragaria_vesca FvH4_5g28660
prunus_persica Prupe.1G579700_v2.0.a1
pyrus_communis pycom08g21010
rosa_chinensis RchiOBHm_Chr7g0220641
rosa_laevigata RLG00000002213
rosa_multiflora Rmu_ssc0000189.1_g000015
rosa_rugosa Rorug07G0195400
rosa_samantha Rh7AG336600 Rh7BG327500 Rh7CG354400 Rh7DG332900
rosa_wichuraiana Rw7G028700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
AciI CCGC 1 cut(s) 37
AclWI GGATC 5 cut(s) 45, 69, 82, 421, 570
AcsI RAATTY 2 cut(s) 43, 466
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 1 cut(s) 522
AgsI TTSAA 3 cut(s) 48, 211, 251
AjnI CCWGG 2 cut(s) 317, 470
AluBI AGCT 2 cut(s) 602, 611
AluI AGCT 2 cut(s) 602, 611
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 5 cut(s) 45, 69, 82, 421, 570
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 2 cut(s) 43, 466
Asp700I GAANNNNTTC 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 26, 386, 501
BamHI GGATCC 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 153, 231
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 353, 360
BciT130I CCWGG 2 cut(s) 319, 472
BcoDI GTCTC 1 cut(s) 232
BfmI CTRYAG 3 cut(s) 101, 255, 297
BglII AGATCT 3 cut(s) 67, 287, 395
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 319, 472
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 319, 472
BmsI GCATC 2 cut(s) 147, 172
BpiI GAAGAC 2 cut(s) 153, 231
BsaBI GATNNNNATC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 54, 471
Bse1I ACTGG 2 cut(s) 129, 331
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 2 cut(s) 319, 472
BseDI CCNNGG 2 cut(s) 54, 471
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 26
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 2 cut(s) 129, 331
BseXI GCAGC 1 cut(s) 172
BslFI GGGAC 3 cut(s) 377, 397, 485
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 377, 397, 485
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 236
BspHI TCATGA 2 cut(s) 325, 355
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 5 cut(s) 45, 69, 82, 421, 570
BsrI ACTGG 2 cut(s) 129, 331
BssECI CCNNGG 2 cut(s) 54, 471
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 319, 472
Bst4CI ACNGT 2 cut(s) 87, 301
Bst6I CTCTTC 2 cut(s) 235, 401
BstACI GRCGYC 1 cut(s) 498
BstDEI CTNAG 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 2 cut(s) 319, 472
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 317, 470
BstSFI CTRYAG 3 cut(s) 101, 255, 297
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 153, 231
BstX2I RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 575
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 575
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
CciI TCATGA 2 cut(s) 325, 355
Csp6I GTAC 1 cut(s) 521
CviAII CATG 5 cut(s) 55, 200, 326, 342, 356
CviJI RGCY 3 cut(s) 437, 602, 611
CviKI_1 RGCY 3 cut(s) 437, 602, 611
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 235, 401
EarI CTCTTC 2 cut(s) 235, 401
Eco130I CCWWGG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 317, 470
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 58, 203, 329, 345, 359
FaiI YATR 8 cut(s) 56, 201, 327, 343, 357, 414, 448, 552
FaqI GGGAC 3 cut(s) 377, 397, 485
FatI CATG 5 cut(s) 54, 199, 325, 341, 355
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 161
GluI GCNGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 5 cut(s) 58, 203, 329, 345, 359
HinfI GANTC 2 cut(s) 322, 540
HphI GGTGA 3 cut(s) 26, 386, 501
Hpy188I TCNGA 4 cut(s) 67, 91, 307, 615
Hpy188III TCNNGA 5 cut(s) 48, 167, 326, 356, 494
HpyAV CCTTC 3 cut(s) 365, 513, 562
HpyCH4III ACNGT 2 cut(s) 87, 301
HpyCH4IV ACGT 2 cut(s) 458, 498
HpyCH4V TGCA 5 cut(s) 160, 257, 345, 450, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 2 cut(s) 458, 498
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 5 cut(s) 58, 203, 329, 345, 359
LmnI GCTCC 1 cut(s) 266
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 147, 172
MaeII ACGT 2 cut(s) 458, 498
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 8 cut(s) 158, 222, 225, 231, 282, 297, 380, 418
MflI RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 575
MluCI AATT 2 cut(s) 43, 466
MmeI TCCRAC 2 cut(s) 159, 603
MnlI CCTC 5 cut(s) 165, 304, 402, 413, 517
Mph1103I ATGCAT 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 2 cut(s) 432, 464
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 2 cut(s) 319, 472
MvaI CCWGG 2 cut(s) 319, 472
MwoI GCNNNNNNNGC 1 cut(s) 608
NcoI CCATGG 1 cut(s) 54
NlaIII CATG 5 cut(s) 58, 203, 329, 345, 359
NlaIV GGNNCC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 347
NspI RCATGY 1 cut(s) 345
PagI TCATGA 2 cut(s) 325, 355
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 322, 540
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 317, 470
PspGI CCWGG 2 cut(s) 317, 470
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 7 cut(s) 50, 67, 74, 287, 395, 426, 575
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 2 cut(s) 432, 464
SatI GCNGC 1 cut(s) 161
ScrFI CCNGG 2 cut(s) 319, 472
SetI ASST 6 cut(s) 314, 376, 461, 501, 604, 613
SfaNI GCATC 2 cut(s) 147, 172
SfcI CTRYAG 3 cut(s) 101, 255, 297
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 2 cut(s) 43, 466
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 317, 470
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 87, 301
TaiI ACGT 2 cut(s) 461, 501
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 533
TasI AATT 2 cut(s) 43, 466
TatI WGTACW 1 cut(s) 520
TfiI GAWTC 2 cut(s) 322, 540
Tru1I TTAA 2 cut(s) 432, 464
Tru9I TTAA 2 cut(s) 432, 464
TscAI CASTG 1 cut(s) 264
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 1 cut(s) 264
XapI RAATTY 2 cut(s) 43, 466
XceI RCATGY 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 289
ZraI GACGTC 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.