Prupe.1G579700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
47164804 .. 47166879
2076 bp
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UTR
Exon/CDS
Intron
Prupe.1G579700.1

Sequence Viewer

Length: 507 bp
ATGGATAAATATTCCAAGATCATGAGGCACTCCCAAAACTCAAGATCCATAGACTTTTCAGATCTTGTATCATTTTCCCCAACTCAAAAATCCAACACCACCACAAACCCCACCAAGAAAACCCAAGAAACCAATCTCCAGATCAAGAAAAACAGCACAACCCAAGATCAGAAAGGAGATGAAGATGATGAACAACAAGGCAATAGTGTTGGAGAGAGCTTTGGTAGTGTGGTGGCGTTGAAAAGGAACAATTCCATCTCTTCTTCTTCTTCTTTAGCTGCTTCTGGATTTCAGTCTGCATTCAAAGGAGCATTCTCAATGAGAAGATCTTCTTCAGTGTCAGAGAGGTATTGCAGGATCCATGACCAATCTACAACAACATTAACATCATCACCCATTGATGATGATGAAGATCAAGCTGCTGCTTGGGGGACAACAAGATCTATGAAGAAAAAGCACAAAGGAGGCAAGATCCTTAAAGCCTGTAAGCGCTTTTTTGGACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.54

Weight (kDa)

9.6

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24275
fragaria_vesca FvH4_5g28660
prunus_persica Prupe.1G579700_v2.0.a1
pyrus_communis pycom08g21010
rosa_chinensis RchiOBHm_Chr7g0220641
rosa_laevigata RLG00000002213
rosa_multiflora Rmu_ssc0000189.1_g000015
rosa_rugosa Rorug07G0195400
rosa_samantha Rh7AG336600 Rh7BG327500 Rh7CG354400 Rh7DG332900
rosa_wichuraiana Rw7G028700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 39, 352, 365, 466
AcuI CTGAAG 1 cut(s) 318
AfeI AGCGCT 1 cut(s) 491
AgsI TTSAA 2 cut(s) 241, 304
AluBI AGCT 3 cut(s) 219, 278, 419
AluI AGCT 3 cut(s) 219, 278, 419
AlwI GGATC 4 cut(s) 39, 352, 365, 466
Aor51HI AGCGCT 1 cut(s) 491
ApeKI GCWGC 3 cut(s) 278, 419, 422
Asp700I GAANNNNTTC 1 cut(s) 328
AspLEI GCGC 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 384
BamHI GGATCC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 265, 406, 409
BccI CCATC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 493
BglII AGATCT 3 cut(s) 61, 326, 440
BisI GCNGC 3 cut(s) 279, 420, 423
BlsI GCNGC 3 cut(s) 280, 421, 424
BmiI GGNNCC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 411
BseJI GATNNNNATC 1 cut(s) 411
BseXI GCAGC 3 cut(s) 265, 406, 409
BslFI GGGAC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 2 cut(s) 299, 311
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 4 cut(s) 39, 352, 365, 466
Bst4CI ACNGT 1 cut(s) 504
Bst6I CTCTTC 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 265, 406, 409
BstX2I RGATCY 6 cut(s) 44, 61, 326, 357, 440, 471
BstYI RGATCY 6 cut(s) 44, 61, 326, 357, 440, 471
BtsIMutI CAGTG 1 cut(s) 342
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 492
CviAII CATG 2 cut(s) 22, 362
CviJI RGCY 4 cut(s) 219, 278, 419, 482
CviKI_1 RGCY 4 cut(s) 219, 278, 419, 482
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 318
FaeI CATG 2 cut(s) 25, 365
FaiI YATR 4 cut(s) 23, 50, 363, 446
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FaqI GGGAC 1 cut(s) 445
FatI CATG 2 cut(s) 21, 361
Fnu4HI GCNGC 3 cut(s) 279, 420, 423
Fsp4HI GCNGC 3 cut(s) 279, 420, 423
GlaI GCGC 1 cut(s) 491
GluI GCNGC 3 cut(s) 279, 420, 423
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 493
HhaI GCGC 1 cut(s) 492
Hin1II CATG 2 cut(s) 25, 365
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HphI GGTGA 1 cut(s) 384
Hpy188I TCNGA 3 cut(s) 61, 171, 343
Hpy188III TCNNGA 5 cut(s) 22, 42, 139, 145, 285
HpyCH4III ACNGT 1 cut(s) 504
HpyCH4V TGCA 2 cut(s) 299, 354
Hsp92II CATG 2 cut(s) 25, 365
HspAI GCGC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 4 cut(s) 152, 270, 340, 496
Lsp1109I GCAGC 3 cut(s) 265, 406, 409
MflI RGATCY 6 cut(s) 44, 61, 326, 357, 440, 471
MluCI AATT 1 cut(s) 250
MmeI TCCRAC 2 cut(s) 117, 190
MnlI CCTC 3 cut(s) 18, 339, 458
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 2 cut(s) 383, 477
Mva1269I GAATGC 2 cut(s) 299, 311
NlaIII CATG 2 cut(s) 25, 365
NlaIV GGNNCC 1 cut(s) 359
PagI TCATGA 1 cut(s) 21
PctI GAATGC 2 cut(s) 299, 311
PdmI GAANNNNTTC 1 cut(s) 328
PkrI GCNGC 3 cut(s) 280, 421, 424
PspN4I GGNNCC 1 cut(s) 359
PsuI RGATCY 6 cut(s) 44, 61, 326, 357, 440, 471
SaqAI TTAA 2 cut(s) 383, 477
SatI GCNGC 3 cut(s) 279, 420, 423
SetI ASST 4 cut(s) 221, 280, 350, 421
SfcI CTRYAG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 1 cut(s) 250
SspI AATATT 1 cut(s) 11
TaaI ACNGT 1 cut(s) 504
TasI AATT 1 cut(s) 250
Tru1I TTAA 2 cut(s) 383, 477
Tru9I TTAA 2 cut(s) 383, 477
TscAI CASTG 1 cut(s) 342
TseI GCWGC 3 cut(s) 278, 419, 422
TspDTI ATGAA 4 cut(s) 195, 204, 423, 461
TspRI CASTG 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.