RLG00000002213

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017198
Physical Location & Seq
Forward (+)
29711887 .. 29712351
465 bp
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UTR
Exon/CDS
Intron
RLM00000002213

Sequence Viewer

Length: 465 bp
ATGGATGGGGGATATTCCAAGATCAATATCATTCACTGCCAAAATTCAAGATCCATGGATTTTTCAGATCTTGGATCCAAAACAGAGTCAGAAAGCAATCCACAGATCAAGGACAAGCTCGACTACACCAGTTCCAACAAACAAGAAGACGATGAGATGCAGCATCAAGAGAGGAAGTTTGGTAATGGTAATGGCAGTCATGTGGTATTGAAAAGGAACTGCTCAGTCTCCTCTTCGTCTTCTGGGTTTAAAACTGCAGTGAAAGGAGCAATATCGTCAATGAGAAGATCTTCCTCTACAGTTTCAGAAAGGTATTCCAGGATTCATGACCAATCTGTAACATGCATTGACCATCATGATGGGGACGAAGAAGGTGATTGGGGGACAACAACAAGATCTAATAGGAAGAGGCATAATGGAGGCAAGATCCTTAAAGCCTGTAAGCGCCTTTTTGGACTACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.18

Weight (kDa)

8.91

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24275
fragaria_vesca FvH4_5g28660
prunus_persica Prupe.1G579700_v2.0.a1
pyrus_communis pycom08g21010
rosa_chinensis RchiOBHm_Chr7g0220641
rosa_laevigata RLG00000002213
rosa_multiflora Rmu_ssc0000189.1_g000015
rosa_rugosa Rorug07G0195400
rosa_samantha Rh7AG336600 Rh7BG327500 Rh7CG354400 Rh7DG332900
rosa_wichuraiana Rw7G028700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 45, 69, 82, 421
AcsI RAATTY 1 cut(s) 43
AgsI TTSAA 2 cut(s) 48, 211
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 4 cut(s) 45, 69, 82, 421
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 447
AsuHPI GGTGA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 153, 231
BbvI GCAGC 1 cut(s) 172
BccI CCATC 2 cut(s) 353, 360
BciT130I CCWGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 463
BfmI CTRYAG 2 cut(s) 255, 297
BfoI RGCGCY 1 cut(s) 448
BglII AGATCT 3 cut(s) 67, 287, 395
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 319
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 147, 172
BpiI GAAGAC 2 cut(s) 153, 231
BsaBI GATNNNNATC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 26
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 172
BslFI GGGAC 2 cut(s) 377, 397
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 377, 397
Bsp143I GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
Bsp19I CCATGG 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 236
BspHI TCATGA 2 cut(s) 325, 355
BspLI GGNNCC 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 4 cut(s) 45, 69, 82, 421
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 238, 401
BstDEI CTNAG 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 8 cut(s) 24, 53, 70, 77, 108, 290, 398, 429
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 2 cut(s) 255, 297
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 2 cut(s) 153, 231
BstX2I RGATCY 6 cut(s) 50, 67, 74, 287, 395, 426
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 6 cut(s) 50, 67, 74, 287, 395, 426
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 34, 264
BtsIMutI CAGTG 2 cut(s) 34, 264
CciI TCATGA 2 cut(s) 325, 355
CfoI GCGC 1 cut(s) 447
CviAII CATG 5 cut(s) 55, 200, 326, 342, 356
CviJI RGCY 2 cut(s) 118, 437
CviKI_1 RGCY 2 cut(s) 118, 437
DdeI CTNAG 1 cut(s) 223
DpnI GATC 8 cut(s) 23, 52, 69, 76, 107, 289, 397, 428
DpnII GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
DraI TTTAAA 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 238, 401
EarI CTCTTC 2 cut(s) 238, 401
Eco130I CCWWGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 58, 203, 329, 345, 359
FaiI YATR 6 cut(s) 56, 201, 327, 343, 357, 414
FaqI GGGAC 2 cut(s) 377, 397
FatI CATG 5 cut(s) 54, 199, 325, 341, 355
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 463
GlaI GCGC 1 cut(s) 446
GluI GCNGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 448
HhaI GCGC 1 cut(s) 447
Hin1II CATG 5 cut(s) 58, 203, 329, 345, 359
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HinfI GANTC 2 cut(s) 86, 322
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 3 cut(s) 67, 91, 307
Hpy188III TCNNGA 4 cut(s) 48, 167, 326, 356
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 160, 257, 345
HpyF3I CTNAG 1 cut(s) 223
Hsp92II CATG 5 cut(s) 58, 203, 329, 345, 359
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 5 cut(s) 142, 228, 304, 331, 451
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 147, 172
MaeI CTAG 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 337
MalI GATC 8 cut(s) 23, 52, 69, 76, 107, 289, 397, 428
MboI GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
MboII GAAGA 7 cut(s) 158, 225, 231, 282, 297, 380, 418
MflI RGATCY 6 cut(s) 50, 67, 74, 287, 395, 426
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 5 cut(s) 165, 241, 304, 402, 413
Mph1103I ATGCAT 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 2 cut(s) 249, 432
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 319
MvaI CCWGG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 54
NdeII GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
NlaIII CATG 5 cut(s) 58, 203, 329, 345, 359
NlaIV GGNNCC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 347
NspI RCATGY 1 cut(s) 345
PagI TCATGA 2 cut(s) 325, 355
PdmI GAANNNNTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 6 cut(s) 50, 67, 74, 287, 395, 426
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 2 cut(s) 249, 432
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 8 cut(s) 21, 50, 67, 74, 105, 287, 395, 426
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 319
SetI ASST 3 cut(s) 120, 314, 376
SfaNI GCATC 2 cut(s) 147, 172
SfcI CTRYAG 2 cut(s) 255, 297
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 249, 432
Tru9I TTAA 2 cut(s) 249, 432
TscAI CASTG 2 cut(s) 41, 264
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 41, 264
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 1 cut(s) 463
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.