Rmu_ssc0000189.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000189.1
OG0017198
Physical Location & Seq
Forward (+)
119207 .. 120420
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000189.1_g000015.1.cds

Sequence Viewer

Length: 768 bp
atgtatcgcacccattccctggactttctgcattccgacaagtacaaggaggtcccacgacaattaccgtgcacttgcctccacattcaagctctacgtactaatacggttatacctctaattgctcaatggtttaagcgcctagaaatggatgggggatattccaagatcaatatcattcaccgccagaattcaagatccatggatttttcagatcttggatccaaaacacagtcagaaagcaatctacagatcaaggacaagctcgactacaccagttccaacaaacaagaagacgatgagatgcagcatcaagagaggaagtttggtaatggtaatggcagtcatgtggtattgaaaaggaactgctcagtctcttcttcgtcttctgggtttcaaactgcagtgaaaggagcaatatcgtcaatgagaagatcttcctctacagtttcagaaaggtattccaggattcatgaccagtctgtaacatgcattgacaatcatgatcgggacgaagaaggtgattgggggacaacaacaagatctaataggaagaggcataatggaggcaagatccttaaagcctgtgaagtatacaaaaggacgttcttaaattcctggggtgcatttcacttctttcaggacgtcccttcctcaccaacacaagtacagcagaatagggtaggaatcggtcattatgacaaccccaaacagaaggcaaaatccaacaggaaaagaaaatccgtagctatcaaagctctgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.19

Weight (kDa)

9.76

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24275
fragaria_vesca FvH4_5g28660
prunus_persica Prupe.1G579700_v2.0.a1
pyrus_communis pycom08g21010
rosa_chinensis RchiOBHm_Chr7g0220641
rosa_laevigata RLG00000002213
rosa_multiflora Rmu_ssc0000189.1_g000015
rosa_rugosa Rorug07G0195400
rosa_samantha Rh7AG336600 Rh7BG327500 Rh7CG354400 Rh7DG332900
rosa_wichuraiana Rw7G028700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 648
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 594
AciI CCGC 1 cut(s) 184
AclWI GGATC 4 cut(s) 192, 216, 229, 568
AcsI RAATTY 2 cut(s) 190, 613
AcyI GRCGYC 1 cut(s) 645
AfaI GTAC 3 cut(s) 44, 100, 669
AfiI CCNNNNNNNGG 2 cut(s) 19, 148
AgsI TTSAA 4 cut(s) 89, 195, 358, 398
AjnI CCWGG 3 cut(s) 18, 464, 617
AluBI AGCT 4 cut(s) 92, 265, 749, 758
AluI AGCT 4 cut(s) 92, 265, 749, 758
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 379
Alw44I GTGCAC 1 cut(s) 70
AlwI GGATC 4 cut(s) 192, 216, 229, 568
ApaLI GTGCAC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 2 cut(s) 190, 613
Asp700I GAANNNNTTC 1 cut(s) 436
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 173, 533, 648
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 74
BamHI GGATCC 1 cut(s) 221
BbsI GAAGAC 2 cut(s) 300, 378
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 3 cut(s) 20, 466, 619
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 3 cut(s) 248, 402, 444
BfoI RGCGCY 1 cut(s) 142
BglII AGATCT 3 cut(s) 214, 434, 542
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme1390I CCNGG 3 cut(s) 20, 466, 619
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 54, 223
BmrFI CCNGG 3 cut(s) 20, 466, 619
BmsI GCATC 2 cut(s) 294, 319
BpiI GAAGAC 2 cut(s) 300, 378
BsaAI YACGTR 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 645
BsaJI CCNNGG 3 cut(s) 18, 201, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 148
Bse1I ACTGG 2 cut(s) 276, 478
Bse8I GATNNNNATC 1 cut(s) 173
BseBI CCWGG 3 cut(s) 20, 466, 619
BseDI CCNNGG 3 cut(s) 18, 201, 618
BseGI GGATG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 2 cut(s) 19, 148
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 276, 478
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 74
BslFI GGGAC 4 cut(s) 38, 524, 544, 632
BslI CCNNNNNNNGG 2 cut(s) 19, 148
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 4 cut(s) 38, 524, 544, 632
BsmI GAATGC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 383
BspHI TCATGA 2 cut(s) 472, 502
BspLI GGNNCC 2 cut(s) 54, 223
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 4 cut(s) 192, 216, 229, 568
BsrI ACTGG 2 cut(s) 276, 478
BssECI CCNNGG 3 cut(s) 18, 201, 618
BssMI GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
BssNAI GTATAC 1 cut(s) 595
BssNI GRCGYC 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 595
Bst2UI CCWGG 3 cut(s) 20, 466, 619
Bst4CI ACNGT 4 cut(s) 69, 109, 234, 448
Bst6I CTCTTC 2 cut(s) 382, 548
BstACI GRCGYC 1 cut(s) 645
BstBAI YACGTR 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 9 cut(s) 171, 200, 217, 224, 255, 437, 508, 545, 576
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
BstMWI GCNNNNNNNGC 1 cut(s) 755
BstNI CCWGG 3 cut(s) 20, 466, 619
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 3 cut(s) 18, 464, 617
BstSFI CTRYAG 3 cut(s) 248, 402, 444
BstSLI GKGCMC 1 cut(s) 74
BstSNI TACGTA 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 2 cut(s) 300, 378
BstX2I RGATCY 6 cut(s) 197, 214, 221, 434, 542, 573
BstYI RGATCY 6 cut(s) 197, 214, 221, 434, 542, 573
BstZ17I GTATAC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
CciI TCATGA 2 cut(s) 472, 502
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 3 cut(s) 43, 99, 668
CviAII CATG 5 cut(s) 202, 347, 473, 489, 503
CviJI RGCY 5 cut(s) 92, 265, 584, 749, 758
CviKI_1 RGCY 5 cut(s) 92, 265, 584, 749, 758
CviQI GTAC 3 cut(s) 43, 99, 668
DdeI CTNAG 1 cut(s) 370
DpnI GATC 9 cut(s) 170, 199, 216, 223, 254, 436, 507, 544, 575
DpnII GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
Eam1104I CTCTTC 2 cut(s) 382, 548
EarI CTCTTC 2 cut(s) 382, 548
Eco105I TACGTA 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 3 cut(s) 18, 464, 617
EcoT14I CCWWGG 1 cut(s) 201
EcoT22I ATGCAT 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 5 cut(s) 205, 350, 476, 492, 506
FaiI YATR 9 cut(s) 113, 203, 348, 474, 490, 504, 561, 595, 699
FaqI GGGAC 4 cut(s) 38, 524, 544, 632
FatI CATG 5 cut(s) 201, 346, 472, 488, 502
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 1 cut(s) 143
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 308
HaeII RGCGCY 1 cut(s) 142
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 645
Hin1II CATG 5 cut(s) 205, 350, 476, 492, 506
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 2 cut(s) 469, 687
HphI GGTGA 3 cut(s) 173, 533, 648
Hpy166II GTNNAC 2 cut(s) 72, 595
Hpy188I TCNGA 5 cut(s) 37, 214, 238, 454, 762
Hpy188III TCNNGA 6 cut(s) 195, 314, 473, 503, 509, 641
Hpy8I GTNNAC 2 cut(s) 72, 595
HpyAV CCTTC 3 cut(s) 512, 660, 709
HpyCH4III ACNGT 4 cut(s) 69, 109, 234, 448
HpyCH4IV ACGT 3 cut(s) 97, 605, 645
HpyCH4V TGCA 6 cut(s) 31, 72, 307, 404, 492, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 755
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 3 cut(s) 97, 605, 645
Hsp92I GRCGYC 1 cut(s) 645
Hsp92II CATG 5 cut(s) 205, 350, 476, 492, 506
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
LmnI GCTCC 1 cut(s) 413
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 2 cut(s) 294, 319
MaeI CTAG 1 cut(s) 143
MaeII ACGT 3 cut(s) 97, 605, 645
MaeIII GTNAC 1 cut(s) 484
MalI GATC 9 cut(s) 170, 199, 216, 223, 254, 436, 507, 544, 575
MboI GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
MboII GAAGA 8 cut(s) 305, 369, 372, 378, 429, 444, 527, 565
MflI RGATCY 6 cut(s) 197, 214, 221, 434, 542, 573
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 4 cut(s) 62, 120, 190, 613
MmeI TCCRAC 3 cut(s) 60, 306, 750
MnlI CCTC 8 cut(s) 43, 89, 126, 312, 451, 549, 560, 664
Mph1103I ATGCAT 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 436
MseI TTAA 3 cut(s) 135, 579, 611
MspR9I CCNGG 3 cut(s) 20, 466, 619
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 3 cut(s) 20, 466, 619
MwoI GCNNNNNNNGC 1 cut(s) 755
NcoI CCATGG 1 cut(s) 201
NdeII GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
NlaIII CATG 5 cut(s) 205, 350, 476, 492, 506
NlaIV GGNNCC 2 cut(s) 54, 223
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 1 cut(s) 492
PagI TCATGA 2 cut(s) 472, 502
PctI GAATGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 469, 687
PflMI CCANNNNNTGG 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 464
PkrI GCNGC 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 3 cut(s) 18, 464, 617
PspGI CCWGG 3 cut(s) 18, 464, 617
PspN4I GGNNCC 2 cut(s) 54, 223
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 6 cut(s) 197, 214, 221, 434, 542, 573
RsaI GTAC 3 cut(s) 44, 100, 669
RsaNI GTAC 3 cut(s) 43, 99, 668
SaqAI TTAA 3 cut(s) 135, 579, 611
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 9 cut(s) 168, 197, 214, 221, 252, 434, 505, 542, 573
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 3 cut(s) 20, 466, 619
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 2 cut(s) 294, 319
SfcI CTRYAG 3 cut(s) 248, 402, 444
SinI GGWCC 1 cut(s) 52
SnaBI TACGTA 1 cut(s) 98
Sse9I AATT 4 cut(s) 62, 120, 190, 613
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 3 cut(s) 18, 464, 617
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 4 cut(s) 69, 109, 234, 448
TaiI ACGT 3 cut(s) 100, 608, 648
TaqI TCGA 1 cut(s) 267
TaqII GACCGA 1 cut(s) 680
TasI AATT 4 cut(s) 62, 120, 190, 613
TatI WGTACW 2 cut(s) 42, 667
TfiI GAWTC 2 cut(s) 469, 687
Tru1I TTAA 3 cut(s) 135, 579, 611
Tru9I TTAA 3 cut(s) 135, 579, 611
TscAI CASTG 1 cut(s) 411
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 19
VneI GTGCAC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 2 cut(s) 190, 613
XceI RCATGY 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 436
XspI CTAG 1 cut(s) 143
ZraI GACGTC 1 cut(s) 646
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.