Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016605

Physical Location & Seq

Genomic Coordinates Forward (+)

12600803 .. 12601726

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCTTCACCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAGTCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCAGTCATGTCACAGACGCTAACCTCAGCTGCAAACCTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTCATACCCGTCTTTACATCCAATGGTTCATGCGATTACCCGACCCAGGTTTTAACCATAGTGCTCCTCACGCTTCTCTCCATCTCCTGCTTCCTTAGCTCCTTCACTGACAGCGTCAAGGCTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGGTTTTCGACTACCCTGACCCTGACGGTTTGGGTTTACCCAATCTTAGTAAATACCGGATAAGAATTATTGACTGGATCCACGCCGTTTTGTCGGTTCTTGTGTTTGGTGCGGTGGCTCTGAGGGACAAGAACGCCGTGAGTTGTTTTTATCCGGCGCCAGAGCAAGAAACCAAGAAGGTTTTGGACATTGTTCCAATGGGTGTTGGGGTTATCTGTGGCATGTTGTTCTTGGTTTTTCCGGCGAGAAGGCACGGTATTGGATATCCGGTCACCGGAGACGGGGGTCGTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

213

Amino Acids

23.21

Weight (kDa)

8.37

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	41 - 204	1.1e-67	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24310
fragaria_vesca	FvH4_5g26430
malus_domestica	MD15G1434600.v1.1
prunus_persica	Prupe.1G578700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220711
rosa_laevigata	RLG00000002202
rosa_multiflora	Rmu_sc0001286.1_g000016
rosa_roxburghii	Rroxscaffold_3G00239120
rosa_rugosa	Rorug07G0196900
rosa_samantha	Rh7AG337300 Rh7BG328200 Rh7CG355400 Rh7DG334000
rosa_wichuraiana	Rw7G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	502
AciI	CCGC	1 cut(s)	458
AclI	AACGTT	1 cut(s)	312
AclWI	GGATC	2 cut(s)	418, 431
AcuI	CTGAAG	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	223, 620, 627
AhlI	ACTAGT	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	132, 222
AluBI	AGCT	4 cut(s)	73, 125, 167, 276
AluI	AGCT	4 cut(s)	73, 125, 167, 276
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	418, 431
ApeKI	GCWGC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	610
BamHI	GGATCC	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	19, 266
BceAI	ACGGC	2 cut(s)	416, 467
BciT130I	CCWGG	2 cut(s)	134, 224
BcoDI	GTCTC	1 cut(s)	618
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	506
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	134, 224
BmiI	GGNNCC	2 cut(s)	425, 504
BmrFI	CCNGG	2 cut(s)	134, 224
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	3 cut(s)	74, 121, 272
BsaHI	GRCGYC	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	4 cut(s)	152, 402, 613, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 620, 627
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	134, 224
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	223, 620, 627
BseMII	CTCAG	2 cut(s)	135, 458
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	167, 233
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	6 cut(s)	153, 403, 500, 587, 614, 621
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	223, 620, 627
BsmAI	GTCTC	1 cut(s)	618
BsmBI	CGTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	423
BspACI	CCGC	1 cut(s)	458
BspCNI	CTCAG	2 cut(s)	134, 459
BspLI	GGNNCC	2 cut(s)	425, 504
BspPI	GGATC	2 cut(s)	418, 431
BspT107I	GGYRCC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	134, 224
Bst4CI	ACNGT	4 cut(s)	308, 323, 374, 602
BstACI	GRCGYC	1 cut(s)	503
BstDEI	CTNAG	6 cut(s)	74, 121, 163, 272, 392, 467
BstEII	GGTNACC	1 cut(s)	616
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 134, 247, 273
BstNI	CCWGG	2 cut(s)	134, 224
BstNSI	RCATGY	3 cut(s)	98, 346, 571
BstPAI	GACNNNNGTC	1 cut(s)	630
BstPI	GGTNACC	1 cut(s)	616
BstSCI	CCNGG	2 cut(s)	132, 222
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	282
CfoI	GCGC	1 cut(s)	505
CseI	GACGC	2 cut(s)	121, 280
CviAII	CATG	5 cut(s)	95, 103, 207, 343, 568
CviJI	RGCY	6 cut(s)	73, 125, 167, 276, 299, 464
CviKI_1	RGCY	6 cut(s)	73, 125, 167, 276, 299, 464
DdeI	CTNAG	6 cut(s)	74, 121, 163, 272, 392, 467
DinI	GGCGCC	1 cut(s)	504
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	321
Eco91I	GGTNACC	1 cut(s)	616
EcoO65I	GGTNACC	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	132, 222
EcoRV	GATATC	1 cut(s)	611
EgeI	GGCGCC	1 cut(s)	504
EheI	GGCGCC	1 cut(s)	504
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	5 cut(s)	98, 106, 210, 346, 571
FaiI	YATR	7 cut(s)	96, 104, 182, 208, 236, 344, 569
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	5 cut(s)	94, 102, 206, 342, 567
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	506
HapII	CCGG	6 cut(s)	153, 403, 500, 587, 614, 621
HgaI	GACGC	2 cut(s)	121, 280
HhaI	GCGC	1 cut(s)	505
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	5 cut(s)	98, 106, 210, 346, 571
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	6 cut(s)	153, 403, 500, 587, 614, 621
HphI	GGTGA	1 cut(s)	610
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	58, 468
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	1 cut(s)	639
HpyAV	CCTTC	4 cut(s)	155, 289, 517, 588
HpyCH4III	ACNGT	4 cut(s)	308, 323, 374, 602
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	98, 128
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 134, 247, 273
HpyF3I	CTNAG	6 cut(s)	74, 121, 163, 272, 392, 467
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	5 cut(s)	98, 106, 210, 346, 571
HspAI	GCGC	1 cut(s)	503
KasI	GGCGCC	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	423
LmnI	GCTCC	3 cut(s)	180, 246, 281
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	105, 308, 616
MalI	GATC	1 cut(s)	425
MboI	GATC	1 cut(s)	423
MboII	GAAGA	2 cut(s)	6, 314
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	411
Mly113I	GGCGCC	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	5 cut(s)	72, 130, 188, 254, 462
MseI	TTAA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	6 cut(s)	153, 403, 500, 587, 614, 621
MspR9I	CCNGG	2 cut(s)	134, 224
MvaI	CCWGG	2 cut(s)	134, 224
MwoI	GCNNNNNNNGC	4 cut(s)	79, 134, 247, 273
NarI	GGCGCC	1 cut(s)	503
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	5 cut(s)	98, 106, 210, 346, 571
NlaIV	GGNNCC	2 cut(s)	425, 504
NmuCI	GTSAC	2 cut(s)	105, 616
NspI	RCATGY	3 cut(s)	98, 346, 571
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	67
PshAI	GACNNNNGTC	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	132, 222
PspEI	GGTNACC	1 cut(s)	616
PspGI	CCWGG	2 cut(s)	132, 222
PspN4I	GGNNCC	2 cut(s)	425, 504
PsuI	RGATCY	1 cut(s)	423
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	423
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	134, 224
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	9 cut(s)	75, 122, 127, 135, 169, 228, 278, 315, 528
SfoI	GGCGCC	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	1 cut(s)	458
SspDI	GGCGCC	1 cut(s)	502
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	132, 222
TaaI	ACNGT	4 cut(s)	308, 323, 374, 602
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	105, 616
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	2 cut(s)	105, 616
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	289
Tth111I	GACNNNGTC	1 cut(s)	290
XceI	RCATGY	3 cut(s)	98, 346, 571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.