Rh7AG337300

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016605
Physical Location & Seq
Forward (+)
39518071 .. 39519829
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG337300.1

Sequence Viewer

Length: 672 bp
ATGTCTCTGAGACCAACTAGAGCAGCGCCAATAGCATCCGTATCAGATTCAAGCAGCGACACCACCGAACCGGATGAGGATAGGCAACCTCTGCAGGTTCAGACTGATCAGGCTCAGGCTCAACCTTCCATATCCCAACGCGCCCTCTCTCAAACTCTAACGAGCACAGCCAACCTAGCCAACCTGCTCCCCACGGGCACCCTCCTGGCCTTCCAACTCCTCATACCAGTGTTCACCAACAACGGCTCCTGCGACGCCGCCACGCGTCCCATGACCTTGATCCTGCTCCTCCTCTTCGCCCTCTCCTGCTTCCTGGCCTCTTTCACCGACAGCGTCAAGGCCTCTAACGGACAGGTGTACTACGGTATAGCCACTCCCAAGGGCCTCTTTTTGTTCGACTACCCTGCCGCAGCAGGTCTTCCCGATTTAAGCAAGTACAAGCTGAGATTCATGGATTTGGTTCATGCCCTTCTGTCCTTCTTGGTGTTTGGTGCTGTGGCTTTCAGGGACAAGAACGTCTTGGGCTGCTTTTATCCCATGCCTGCTCACGAAACTCAGGAGGTTTTGGACATTGTTCCCATTGGTATTGGCCTCCTGTGCAGTTTGCTCTTTGTCGTCTTCCCCACCACAAGACATGGCATTGGCTACCCACTCTCACCTGGCAAATCCTAA

Protein Analysis

223

Amino Acids

23.99

Weight (kDa)

5.85

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 55 - 216 6.1e-69 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0016605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24310
fragaria_vesca FvH4_5g26430
malus_domestica MD15G1434600.v1.1
prunus_persica Prupe.1G578700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220711
rosa_laevigata RLG00000002202
rosa_multiflora Rmu_sc0001286.1_g000016
rosa_roxburghii Rroxscaffold_3G00239120
rosa_rugosa Rorug07G0196900
rosa_samantha Rh7AG337300 Rh7BG328200 Rh7CG355400 Rh7DG334000
rosa_wichuraiana Rw7G028780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
Acc36I ACCTGC 3 cut(s) 85, 192, 404
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 2 cut(s) 141, 265
AciI CCGC 2 cut(s) 258, 408
AclWI GGATC 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 359, 437
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 3 cut(s) 204, 312, 658
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 4, 9
AlwI GGATC 1 cut(s) 274
AoxI GGCC 5 cut(s) 207, 315, 339, 382, 589
ApeKI GCWGC 4 cut(s) 23, 54, 410, 525
AspLEI GCGC 2 cut(s) 28, 143
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 3 cut(s) 226, 316, 648
BaeGI GKGCMC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 410, 610
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 35, 66, 422, 512
BceAI ACGGC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 3 cut(s) 206, 314, 660
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 4, 9
BfaI CTAG 2 cut(s) 18, 176
BfmI CTRYAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 3 cut(s) 85, 192, 404
BisI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
BlsI GCNGC 6 cut(s) 25, 56, 259, 409, 412, 527
Bme1390I CCNGG 3 cut(s) 206, 314, 660
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 2 cut(s) 199, 247
BmrFI CCNGG 3 cut(s) 206, 314, 660
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 410, 610
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 192, 378
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bse1I ACTGG 1 cut(s) 227
BseBI CCWGG 3 cut(s) 206, 314, 660
BseDI CCNNGG 2 cut(s) 192, 378
BseGI GGATG 2 cut(s) 35, 79
BseMII CTCAG 3 cut(s) 128, 434, 569
BseNI ACTGG 1 cut(s) 227
BseRI GAGGAG 3 cut(s) 209, 278, 281
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 4 cut(s) 35, 66, 422, 512
BsgI GTGCAG 1 cut(s) 619
Bsh1236I CGCG 2 cut(s) 141, 265
BshFI GGCC 5 cut(s) 209, 317, 341, 384, 591
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 252, 521
BsmAI GTCTC 2 cut(s) 4, 9
BsmFI GGGAC 2 cut(s) 252, 521
BsnI GGCC 5 cut(s) 209, 317, 341, 384, 591
Bso31I GGTCTC 1 cut(s) 4
Bsp1286I GDGCHC 2 cut(s) 167, 200
Bsp143I GATC 2 cut(s) 106, 279
BspACI CCGC 2 cut(s) 258, 408
BspANI GGCC 5 cut(s) 209, 317, 341, 384, 591
BspCNI CTCAG 3 cut(s) 127, 435, 568
BspFNI CGCG 2 cut(s) 141, 265
BspLI GGNNCC 2 cut(s) 199, 247
BspMAI CTGCAG 1 cut(s) 96
BspMI ACCTGC 3 cut(s) 85, 192, 404
BspPI GGATC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 192, 378
BssMI GATC 2 cut(s) 106, 279
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 3 cut(s) 206, 314, 660
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 8, 114, 443, 555
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 35, 79
BstFNI CGCG 2 cut(s) 141, 265
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 143
BstKTI GATC 2 cut(s) 109, 282
BstMAI GTCTC 2 cut(s) 4, 9
BstMBI GATC 2 cut(s) 106, 279
BstMWI GCNNNNNNNGC 4 cut(s) 32, 91, 176, 597
BstNI CCWGG 3 cut(s) 206, 314, 660
BstSCI CCNGG 3 cut(s) 204, 312, 658
BstSFI CTRYAG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 2 cut(s) 141, 265
BstV1I GCAGC 4 cut(s) 35, 66, 422, 512
BstV2I GAAGAC 2 cut(s) 410, 610
BsuRI GGCC 5 cut(s) 209, 317, 341, 384, 591
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 35, 79
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 3 cut(s) 85, 192, 404
Cac8I GCNNGC 1 cut(s) 543
CfoI GCGC 2 cut(s) 28, 143
Cfr13I GGNCC 1 cut(s) 382
CseI GACGC 3 cut(s) 254, 263, 322
Csp6I GTAC 2 cut(s) 358, 436
CviAII CATG 5 cut(s) 271, 451, 464, 538, 635
CviQI GTAC 2 cut(s) 358, 436
DdeI CTNAG 4 cut(s) 8, 114, 443, 555
DpnI GATC 2 cut(s) 108, 281
DpnII GATC 2 cut(s) 106, 279
DrdI GACNNNNNNGTC 1 cut(s) 515
DseDI GACNNNNNNGTC 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 3 cut(s) 204, 312, 658
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 5 cut(s) 274, 454, 467, 541, 638
FaiI YATR 8 cut(s) 131, 224, 272, 368, 452, 465, 539, 636
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 503, 535
FaqI GGGAC 2 cut(s) 252, 521
FatI CATG 5 cut(s) 270, 450, 463, 537, 634
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
FokI GGATG 2 cut(s) 22, 86
Fsp4HI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
FspBI CTAG 2 cut(s) 18, 176
GlaI GCGC 2 cut(s) 27, 142
GluI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 5 cut(s) 209, 317, 341, 384, 591
HapII CCGG 1 cut(s) 71
HgaI GACGC 3 cut(s) 254, 263, 322
HhaI GCGC 2 cut(s) 28, 143
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 5 cut(s) 274, 454, 467, 541, 638
Hin6I GCGC 2 cut(s) 26, 141
HinP1I GCGC 2 cut(s) 26, 141
HinfI GANTC 2 cut(s) 47, 447
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 226, 316, 648
Hpy166II GTNNAC 2 cut(s) 234, 358
Hpy188I TCNGA 3 cut(s) 9, 46, 102
Hpy188III TCNNGA 3 cut(s) 422, 548, 557
Hpy8I GTNNAC 2 cut(s) 234, 358
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 4 cut(s) 135, 220, 479, 487
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 2 cut(s) 94, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 91, 176, 597
HpyF3I CTNAG 4 cut(s) 8, 114, 443, 555
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 5 cut(s) 274, 454, 467, 541, 638
HspAI GCGC 2 cut(s) 26, 141
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 279
LmnI GCTCC 3 cut(s) 192, 251, 291
Lsp1109I GCAGC 4 cut(s) 35, 66, 422, 512
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 18, 176
MaeII ACGT 1 cut(s) 516
MalI GATC 2 cut(s) 108, 281
MboI GATC 2 cut(s) 106, 279
MboII GAAGA 3 cut(s) 286, 410, 610
MhlI GDGCHC 2 cut(s) 167, 200
MluI ACGCGT 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 238
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 3 cut(s) 206, 314, 660
MvaI CCWGG 3 cut(s) 206, 314, 660
MvnI CGCG 2 cut(s) 141, 265
MwoI GCNNNNNNNGC 4 cut(s) 32, 91, 176, 597
NdeII GATC 2 cut(s) 106, 279
NlaIII CATG 5 cut(s) 274, 454, 467, 541, 638
NlaIV GGNNCC 2 cut(s) 199, 247
PceI AGGCCT 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 47, 447
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 6 cut(s) 25, 56, 259, 409, 412, 527
Psp6I CCWGG 3 cut(s) 204, 312, 658
PspGI CCWGG 3 cut(s) 204, 312, 658
PspN4I GGNNCC 2 cut(s) 199, 247
PspPI GGNCC 1 cut(s) 382
PstI CTGCAG 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 2 cut(s) 359, 437
RsaNI GTAC 2 cut(s) 358, 436
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
Sau3AI GATC 2 cut(s) 106, 279
Sau96I GGNCC 1 cut(s) 382
ScrFI CCNGG 3 cut(s) 206, 314, 660
SduI GDGCHC 2 cut(s) 167, 200
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 227
SseBI AGGCCT 1 cut(s) 341
SsiI CCGC 2 cut(s) 258, 408
SspMI CTAG 2 cut(s) 18, 176
StuI AGGCCT 1 cut(s) 341
StyD4I CCNGG 3 cut(s) 204, 312, 658
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 519
TaqI TCGA 1 cut(s) 396
TatI WGTACW 2 cut(s) 357, 435
TauI GCSGC 2 cut(s) 260, 410
TfiI GAWTC 2 cut(s) 47, 447
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 234
TseI GCWGC 4 cut(s) 23, 54, 410, 525
TspDTI ATGAA 2 cut(s) 439, 452
TspGWI ACGGA 2 cut(s) 28, 363
TspRI CASTG 1 cut(s) 234
Tth111I GACNNNGTC 1 cut(s) 332
XspI CTAG 2 cut(s) 18, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.