RLG00000002202

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016605
Physical Location & Seq
Reverse (-)
29161410 .. 29162081
672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002202

Sequence Viewer

Length: 672 bp
ATGTCTCTGAGACCAAGTAAAGCAGCGCCAGTAGCATCCGTATCAGATTCAAGCAGCGACACCACCGAACCGGATGAGGATAGGCAACCTCTGCAGGTTCAGACTGATCAGGCTCAGGCTCAACCTTCCATATCCCAACGCGCCCTCTCTCAAACTCTAACGAGCACAGCCAACCTGGCCAACCTGCTTCCCACGGGGACCCTCCTGGCCTTCCAACTCCTCATACCAGTGTTCACCAACAACGGCTCCTGCGACGCCGCCACGCGTCCCATGACCTTGATATTGCTCCTCCTCTTCGCCCTCTCCTGCTTCCTGGCCTCTTTCACCGACAGCGTCAAGGCCCCTAACGGACAGGTGTACTACGGCATAGCCACTTCCAAGGGCCTCTTTTTGTTCGACTACCCTGCCGCAGCAGGTCTTCCCGATTTAAGCAAGTACAAGCTGAGATTCATGGATTTGGTTCATGCCCTTCTGTCGGTCTTGGTGTTTGGTGCTGTGGCTTTCAGGGACAAGAACGTCTTGGGCTGCTTTTATCCCATGCCTGCTCATGAAACTCAGGAGGTTTTGGACATTGTTCCCATTGGTATTGGCCTCCTTTGCAGTTTGCTCTTTGTCGTCTTCCCCACCACAAGACATGGCATTGGCTACCCACTCTCACCTGGCAAATCCTAA

Protein Analysis

224

Amino Acids

23.88

Weight (kDa)

5.85

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 55 - 216 4.3e-69 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24310
fragaria_vesca FvH4_5g26430
malus_domestica MD15G1434600.v1.1
prunus_persica Prupe.1G578700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220711
rosa_laevigata RLG00000002202
rosa_multiflora Rmu_sc0001286.1_g000016
rosa_roxburghii Rroxscaffold_3G00239120
rosa_rugosa Rorug07G0196900
rosa_samantha Rh7AG337300 Rh7BG328200 Rh7CG355400 Rh7DG334000
rosa_wichuraiana Rw7G028780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
Acc36I ACCTGC 3 cut(s) 85, 192, 404
AccII CGCG 2 cut(s) 141, 265
AciI CCGC 2 cut(s) 258, 408
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 359, 437
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 4 cut(s) 174, 204, 312, 658
AluBI AGCT 1 cut(s) 442
AluI AGCT 1 cut(s) 442
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 4, 9
AoxI GGCC 6 cut(s) 177, 207, 315, 339, 382, 589
ApeKI GCWGC 4 cut(s) 23, 54, 410, 525
AspLEI GCGC 2 cut(s) 28, 143
AspS9I GGNCC 3 cut(s) 198, 340, 382
AsuHPI GGTGA 3 cut(s) 226, 316, 648
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 410, 610
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 35, 66, 422, 512
BceAI ACGGC 2 cut(s) 259, 379
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 4 cut(s) 176, 206, 314, 660
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 4, 9
BfmI CTRYAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 3 cut(s) 85, 192, 404
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
BlsI GCNGC 6 cut(s) 25, 56, 259, 409, 412, 527
Bme1390I CCNGG 4 cut(s) 176, 206, 314, 660
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 3 cut(s) 198, 340, 382
BmiI GGNNCC 4 cut(s) 199, 200, 247, 342
BmrFI CCNGG 4 cut(s) 176, 206, 314, 660
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 410, 610
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 192, 378
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 2 cut(s) 29, 227
BseBI CCWGG 4 cut(s) 176, 206, 314, 660
BseDI CCNNGG 2 cut(s) 192, 378
BseGI GGATG 2 cut(s) 35, 79
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMII CTCAG 3 cut(s) 128, 434, 569
BseNI ACTGG 2 cut(s) 29, 227
BseRI GAGGAG 3 cut(s) 209, 278, 281
BseXI GCAGC 4 cut(s) 35, 66, 422, 512
Bsh1236I CGCG 2 cut(s) 141, 265
BshFI GGCC 6 cut(s) 179, 209, 317, 341, 384, 591
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 3 cut(s) 211, 252, 521
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 2 cut(s) 4, 9
BsmFI GGGAC 3 cut(s) 211, 252, 521
BsnI GGCC 6 cut(s) 179, 209, 317, 341, 384, 591
Bso31I GGTCTC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 2 cut(s) 258, 408
BspANI GGCC 6 cut(s) 179, 209, 317, 341, 384, 591
BspCNI CTCAG 3 cut(s) 127, 435, 568
BspFNI CGCG 2 cut(s) 141, 265
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 4 cut(s) 199, 200, 247, 342
BspMAI CTGCAG 1 cut(s) 96
BspMI ACCTGC 3 cut(s) 85, 192, 404
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 29, 227
BssECI CCNNGG 2 cut(s) 192, 378
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 4 cut(s) 176, 206, 314, 660
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 4 cut(s) 8, 114, 443, 555
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 35, 79
BstFNI CGCG 2 cut(s) 141, 265
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 143
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 4, 9
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 32, 91, 176, 597
BstNI CCWGG 4 cut(s) 176, 206, 314, 660
BstSCI CCNGG 4 cut(s) 174, 204, 312, 658
BstSFI CTRYAG 1 cut(s) 92
BstUI CGCG 2 cut(s) 141, 265
BstV1I GCAGC 4 cut(s) 35, 66, 422, 512
BstV2I GAAGAC 2 cut(s) 410, 610
BsuRI GGCC 6 cut(s) 179, 209, 317, 341, 384, 591
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 35, 79
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 3 cut(s) 85, 192, 404
Cac8I GCNNGC 1 cut(s) 543
CciI TCATGA 1 cut(s) 547
CfoI GCGC 2 cut(s) 28, 143
Cfr13I GGNCC 3 cut(s) 198, 340, 382
CseI GACGC 3 cut(s) 254, 263, 322
Csp6I GTAC 2 cut(s) 358, 436
CviAII CATG 6 cut(s) 271, 451, 464, 538, 548, 635
CviQI GTAC 2 cut(s) 358, 436
DdeI CTNAG 4 cut(s) 8, 114, 443, 555
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DrdI GACNNNNNNGTC 1 cut(s) 515
DseDI GACNNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 198
EcoO109I RGGNCCY 3 cut(s) 198, 340, 382
EcoRII CCWGG 4 cut(s) 174, 204, 312, 658
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 6 cut(s) 274, 454, 467, 541, 551, 638
FaiI YATR 9 cut(s) 131, 224, 272, 368, 452, 465, 539, 549, 636
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 503, 535
FaqI GGGAC 3 cut(s) 211, 252, 521
FatI CATG 6 cut(s) 270, 450, 463, 537, 547, 634
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
FokI GGATG 2 cut(s) 22, 86
Fsp4HI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
GlaI GCGC 2 cut(s) 27, 142
GluI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 6 cut(s) 179, 209, 317, 341, 384, 591
HapII CCGG 1 cut(s) 71
HgaI GACGC 3 cut(s) 254, 263, 322
HhaI GCGC 2 cut(s) 28, 143
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 6 cut(s) 274, 454, 467, 541, 551, 638
Hin6I GCGC 2 cut(s) 26, 141
HinP1I GCGC 2 cut(s) 26, 141
HinfI GANTC 2 cut(s) 47, 447
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 226, 316, 648
Hpy166II GTNNAC 2 cut(s) 234, 358
Hpy188I TCNGA 3 cut(s) 9, 46, 102
Hpy188III TCNNGA 3 cut(s) 422, 548, 557
Hpy8I GTNNAC 2 cut(s) 234, 358
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 135, 220, 479
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 2 cut(s) 94, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 91, 176, 597
HpyF3I CTNAG 4 cut(s) 8, 114, 443, 555
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 6 cut(s) 274, 454, 467, 541, 551, 638
HspAI GCGC 2 cut(s) 26, 141
KflI GGGWCCC 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 251, 291
Lsp1109I GCAGC 4 cut(s) 35, 66, 422, 512
LweI GCATC 1 cut(s) 44
MaeII ACGT 1 cut(s) 516
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 286, 410, 610
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 179
MluI ACGCGT 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 238
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 4 cut(s) 176, 206, 314, 660
MvaI CCWGG 4 cut(s) 176, 206, 314, 660
MvnI CGCG 2 cut(s) 141, 265
MwoI GCNNNNNNNGC 4 cut(s) 32, 91, 176, 597
NdeII GATC 1 cut(s) 106
NlaIII CATG 6 cut(s) 274, 454, 467, 541, 551, 638
NlaIV GGNNCC 4 cut(s) 199, 200, 247, 342
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 2 cut(s) 47, 447
PflFI GACNNNGTC 1 cut(s) 332
PkrI GCNGC 6 cut(s) 25, 56, 259, 409, 412, 527
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 4 cut(s) 174, 204, 312, 658
PspGI CCWGG 4 cut(s) 174, 204, 312, 658
PspN4I GGNNCC 4 cut(s) 199, 200, 247, 342
PspPI GGNCC 3 cut(s) 198, 340, 382
PspPPI RGGWCCY 1 cut(s) 198
PstI CTGCAG 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 332
RsaI GTAC 2 cut(s) 359, 437
RsaNI GTAC 2 cut(s) 358, 436
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 6 cut(s) 24, 55, 258, 408, 411, 526
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 3 cut(s) 198, 340, 382
ScrFI CCNGG 4 cut(s) 176, 206, 314, 660
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 227
SsiI CCGC 2 cut(s) 258, 408
StyD4I CCNGG 4 cut(s) 174, 204, 312, 658
StyI CCWWGG 1 cut(s) 378
TaiI ACGT 1 cut(s) 519
TaqI TCGA 1 cut(s) 396
TaqII GACCGA 1 cut(s) 466
TatI WGTACW 2 cut(s) 357, 435
TauI GCSGC 2 cut(s) 260, 410
TfiI GAWTC 2 cut(s) 47, 447
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 234
TseI GCWGC 4 cut(s) 23, 54, 410, 525
TspDTI ATGAA 3 cut(s) 439, 452, 564
TspGWI ACGGA 2 cut(s) 28, 363
TspRI CASTG 1 cut(s) 234
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.