Rroxscaffold_3G00239120

Protein of unknown function (DUF679)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016605
Physical Location & Seq
Reverse (-)
28677520 .. 28679116
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239120.1

Sequence Viewer

Length: 678 bp
ATGTCTCTGAGACCAACTAGAGCAGCGCCAATAGCATCCGTATCAGATTCAAGCAGCGACACCACCGAACCGGATGAGGATAGGCAACCTCTGCAGGTTCAGACTGATCAGGCTCAGGCTCAGGCTCAACCTTCCATATCCCAACGCGCCCTCTCTCAAACTCTAACGAGCACAGCCAACCTAGCCAACCTGCTCCCCACGGGCACCCTCCTGGCCTTCCAACTCCTCATACCAGTGTTCACCAACAACGGCTCCTGCGACGCCGCCACGCGTCCCATGACCTTGATCCTGCTCCTCCTCTTCGCCCTCTCCTGCTTCCTGGCCTCTTTCACCGACAGCGTCAAGGCCTCTAACGGACAGGTGTACTACGGCATAGCCACTCCCAAGGGCCTCTTTTTGTTCGACTACCCTGCCGCAGCAGCTCTTCCCGATTTAAGCAAGTACAAGCTGAGATTCATGGATTTGGTTCATGCCCTTCTGTCCGTCTTGGTGTTTGGTGCTGTGGCTTTCAGAGACAAGAACGTCTTGGGCTGCTTTTATCCCATGCCTGCTCACGAAACTCAGGAGGTTTTGGACATTGTTCCCATTGGTATTGGCCTCCTTTGCAGTTTGCTCTTTGTCGTCTTCCCCACCACAAGACATGGCATTGGCTACCCAGTCTCACCTGGCAAATCCTAA

Protein Analysis

225

Amino Acids

24.14

Weight (kDa)

5.85

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF679 PF05078 57 - 218 1.1e-69 Protein of unknown function (DUF679)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016605)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24310
fragaria_vesca FvH4_5g26430
malus_domestica MD15G1434600.v1.1
prunus_persica Prupe.1G578700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220711
rosa_laevigata RLG00000002202
rosa_multiflora Rmu_sc0001286.1_g000016
rosa_roxburghii Rroxscaffold_3G00239120
rosa_rugosa Rorug07G0196900
rosa_samantha Rh7AG337300 Rh7BG328200 Rh7CG355400 Rh7DG334000
rosa_wichuraiana Rw7G028780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 521
Acc36I ACCTGC 2 cut(s) 85, 198
AccB1I GGYRCC 1 cut(s) 203
AccII CGCG 2 cut(s) 147, 271
AciI CCGC 2 cut(s) 264, 414
AclWI GGATC 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 365, 443
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 3 cut(s) 210, 318, 664
AluBI AGCT 2 cut(s) 422, 448
AluI AGCT 2 cut(s) 422, 448
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 4 cut(s) 4, 9, 507, 664
AlwI GGATC 1 cut(s) 280
AoxI GGCC 5 cut(s) 213, 321, 345, 388, 595
ApeKI GCWGC 5 cut(s) 23, 54, 416, 419, 531
AspLEI GCGC 2 cut(s) 28, 149
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 3 cut(s) 232, 322, 654
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 5 cut(s) 35, 66, 428, 431, 518
BceAI ACGGC 2 cut(s) 265, 385
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 3 cut(s) 212, 320, 666
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 4 cut(s) 4, 9, 507, 664
BfaI CTAG 2 cut(s) 18, 182
BfmI CTRYAG 1 cut(s) 92
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 2 cut(s) 85, 198
BisI GCNGC 7 cut(s) 24, 55, 264, 414, 417, 420, 532
BlsI GCNGC 7 cut(s) 25, 56, 265, 415, 418, 421, 533
Bme1390I CCNGG 3 cut(s) 212, 320, 666
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 205, 253
BmrFI CCNGG 3 cut(s) 212, 320, 666
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 650
BpiI GAAGAC 1 cut(s) 616
Bpu10I CCTNAGC 2 cut(s) 114, 120
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 2 cut(s) 198, 384
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse1I ACTGG 2 cut(s) 233, 656
BseBI CCWGG 3 cut(s) 212, 320, 666
BseDI CCNNGG 2 cut(s) 198, 384
BseGI GGATG 2 cut(s) 35, 79
BseMII CTCAG 4 cut(s) 128, 134, 440, 575
BseNI ACTGG 2 cut(s) 233, 656
BseRI GAGGAG 3 cut(s) 215, 284, 287
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 5 cut(s) 35, 66, 428, 431, 518
Bsh1236I CGCG 2 cut(s) 147, 271
BshFI GGCC 5 cut(s) 215, 323, 347, 390, 597
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 258
BsmAI GTCTC 4 cut(s) 4, 9, 507, 664
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 5 cut(s) 215, 323, 347, 390, 597
Bso31I GGTCTC 1 cut(s) 4
Bsp1286I GDGCHC 2 cut(s) 173, 206
Bsp143I GATC 2 cut(s) 106, 285
BspACI CCGC 2 cut(s) 264, 414
BspANI GGCC 5 cut(s) 215, 323, 347, 390, 597
BspCNI CTCAG 4 cut(s) 127, 133, 441, 574
BspFNI CGCG 2 cut(s) 147, 271
BspLI GGNNCC 2 cut(s) 205, 253
BspMAI CTGCAG 1 cut(s) 96
BspMI ACCTGC 2 cut(s) 85, 198
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 233, 656
BssECI CCNNGG 2 cut(s) 198, 384
BssMI GATC 2 cut(s) 106, 285
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 212, 320, 666
Bst6I CTCTTC 2 cut(s) 305, 429
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 5 cut(s) 8, 114, 120, 449, 561
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 35, 79
BstFNI CGCG 2 cut(s) 147, 271
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 149
BstKTI GATC 2 cut(s) 109, 288
BstMAI GTCTC 4 cut(s) 4, 9, 507, 664
BstMBI GATC 2 cut(s) 106, 285
BstMWI GCNNNNNNNGC 5 cut(s) 32, 91, 182, 419, 603
BstNI CCWGG 3 cut(s) 212, 320, 666
BstSCI CCNGG 3 cut(s) 210, 318, 664
BstSFI CTRYAG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 2 cut(s) 147, 271
BstV1I GCAGC 5 cut(s) 35, 66, 428, 431, 518
BstV2I GAAGAC 1 cut(s) 616
BsuRI GGCC 5 cut(s) 215, 323, 347, 390, 597
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 35, 79
BtsIMutI CAGTG 1 cut(s) 240
BveI ACCTGC 2 cut(s) 85, 198
Cac8I GCNNGC 1 cut(s) 549
CfoI GCGC 2 cut(s) 28, 149
Cfr13I GGNCC 1 cut(s) 388
CseI GACGC 3 cut(s) 260, 269, 328
Csp6I GTAC 2 cut(s) 364, 442
CviAII CATG 5 cut(s) 277, 457, 470, 544, 641
CviQI GTAC 2 cut(s) 364, 442
DdeI CTNAG 5 cut(s) 8, 114, 120, 449, 561
DpnI GATC 2 cut(s) 108, 287
DpnII GATC 2 cut(s) 106, 285
DrdI GACNNNNNNGTC 1 cut(s) 521
DseDI GACNNNNNNGTC 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 305, 429
EarI CTCTTC 2 cut(s) 305, 429
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 210, 318, 664
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 5 cut(s) 280, 460, 473, 547, 644
FaiI YATR 8 cut(s) 137, 230, 278, 374, 458, 471, 545, 642
FalI AAGNNNNNCTT 4 cut(s) 377, 409, 509, 541
FaqI GGGAC 1 cut(s) 258
FatI CATG 5 cut(s) 276, 456, 469, 543, 640
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 7 cut(s) 24, 55, 264, 414, 417, 420, 532
FokI GGATG 2 cut(s) 22, 86
Fsp4HI GCNGC 7 cut(s) 24, 55, 264, 414, 417, 420, 532
FspBI CTAG 2 cut(s) 18, 182
GlaI GCGC 2 cut(s) 27, 148
GluI GCNGC 7 cut(s) 24, 55, 264, 414, 417, 420, 532
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 5 cut(s) 215, 323, 347, 390, 597
HapII CCGG 1 cut(s) 71
HgaI GACGC 3 cut(s) 260, 269, 328
HhaI GCGC 2 cut(s) 28, 149
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 280, 460, 473, 547, 644
Hin6I GCGC 2 cut(s) 26, 147
HinP1I GCGC 2 cut(s) 26, 147
HinfI GANTC 2 cut(s) 47, 453
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 232, 322, 654
Hpy166II GTNNAC 2 cut(s) 240, 364
Hpy188I TCNGA 4 cut(s) 9, 46, 102, 512
Hpy188III TCNNGA 3 cut(s) 428, 554, 563
Hpy8I GTNNAC 2 cut(s) 240, 364
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 141, 226, 485
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 2 cut(s) 94, 606
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 91, 182, 419, 603
HpyF3I CTNAG 5 cut(s) 8, 114, 120, 449, 561
HpySE526I ACGT 1 cut(s) 522
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 280, 460, 473, 547, 644
HspAI GCGC 2 cut(s) 26, 147
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 285
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 3 cut(s) 198, 257, 297
Lsp1109I GCAGC 5 cut(s) 35, 66, 428, 431, 518
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 18, 182
MaeII ACGT 1 cut(s) 522
MalI GATC 2 cut(s) 108, 287
MboI GATC 2 cut(s) 106, 285
MboII GAAGA 3 cut(s) 292, 416, 616
MhlI GDGCHC 2 cut(s) 173, 206
MluI ACGCGT 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 244
MseI TTAA 1 cut(s) 434
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 3 cut(s) 212, 320, 666
MvaI CCWGG 3 cut(s) 212, 320, 666
MvnI CGCG 2 cut(s) 147, 271
MwoI GCNNNNNNNGC 5 cut(s) 32, 91, 182, 419, 603
NdeII GATC 2 cut(s) 106, 285
NlaIII CATG 5 cut(s) 280, 460, 473, 547, 644
NlaIV GGNNCC 2 cut(s) 205, 253
PceI AGGCCT 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 47, 453
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 7 cut(s) 25, 56, 265, 415, 418, 421, 533
Psp6I CCWGG 3 cut(s) 210, 318, 664
PspGI CCWGG 3 cut(s) 210, 318, 664
PspN4I GGNNCC 2 cut(s) 205, 253
PspPI GGNCC 1 cut(s) 388
PstI CTGCAG 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 2 cut(s) 365, 443
RsaNI GTAC 2 cut(s) 364, 442
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 7 cut(s) 24, 55, 264, 414, 417, 420, 532
Sau3AI GATC 2 cut(s) 106, 285
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 3 cut(s) 212, 320, 666
SduI GDGCHC 2 cut(s) 173, 206
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 233
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 2 cut(s) 264, 414
SspMI CTAG 2 cut(s) 18, 182
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 3 cut(s) 210, 318, 664
StyI CCWWGG 1 cut(s) 384
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 402
TatI WGTACW 2 cut(s) 363, 441
TauI GCSGC 2 cut(s) 266, 416
TfiI GAWTC 2 cut(s) 47, 453
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 240
TseI GCWGC 5 cut(s) 23, 54, 416, 419, 531
TspDTI ATGAA 2 cut(s) 445, 458
TspGWI ACGGA 3 cut(s) 28, 369, 472
TspRI CASTG 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 338
XspI CTAG 2 cut(s) 18, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.