Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016605

Physical Location & Seq

Genomic Coordinates Reverse (-)

53484450 .. 53485112

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1434600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCTCTTAGACCAAGAGCAACTTCCACCATCACCCCTGCCGCGCCACAACCAACCTCCACCTCCGATACAGAACCTGATGAAACCCCGAAAAGCCCCCAACCACCTAAACCCACCTTCTCCCAACGTGCCATCTCCCAAACCCTAACGAGCACAGCAAACCTAGCCAACCTCCTCCCCACAGGCACCCTCCTTGCTTTCCAACTCCTCATCCCAATCTTCACCGGCAACGGCTCTTGCGATGCCGCCACACGCCCCATGACCTTGATCCTCCTTCTCCTCCTCGCCCTCTCGTGCTTTCTCGCGTCCTTCACCGACAGCGTCAAGGCTTTGGACGGACAAGTCTACTACGGGTTGGCAACCACCAAGGGCCTGTTTGTGTTTGACTACCCGGATGCTTCGGGTTCGGGGCTGCCGGATTTGAGCAAGTACAAGATAAGATTCATTGATTTGGTTCATGCAGTTTTGTCTGTGTTTGTGTTTGGTGCTGTGGCTTTGAGGGACAAGAATGTTTTGGGGTGCTTTTATCCCACACCAGACCATCAGACTCAGGAGGTCTTGGACATTGGTCCAGTTGGTATAGGGCTCATTTGCAGCTTGCTCTTTGTGGTCTTCCCCACCAGGAGACACGGTATTGGATTCCCTCTTACGCCTGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

221

Amino Acids

23.51

Weight (kDa)

7.67

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	51 - 214	4e-67	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24310
fragaria_vesca	FvH4_5g26430
malus_domestica	MD15G1434600.v1.1
prunus_persica	Prupe.1G578700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220711
rosa_laevigata	RLG00000002202
rosa_multiflora	Rmu_sc0001286.1_g000016
rosa_roxburghii	Rroxscaffold_3G00239120
rosa_rugosa	Rorug07G0196900
rosa_samantha	Rh7AG337300 Rh7BG328200 Rh7CG355400 Rh7DG334000
rosa_wichuraiana	Rw7G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	2 cut(s)	44, 305
AciI	CCGC	2 cut(s)	42, 246
AclWI	GGATC	1 cut(s)	262
AfaI	GTAC	1 cut(s)	431
AjnI	CCWGG	2 cut(s)	620, 652
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	1 cut(s)	597
AluI	AGCT	1 cut(s)	597
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	9, 619
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	2 cut(s)	412, 594
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	370, 569
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	25, 214, 304
AvaII	GGWCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	588
BauI	CACGAG	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	399, 606
BccI	CCATC	3 cut(s)	38, 140, 549
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	2 cut(s)	622, 654
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	9, 619
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	4 cut(s)	42, 246, 413, 595
BlsI	GCNGC	4 cut(s)	43, 247, 414, 596
Bme1390I	CCNGG	3 cut(s)	392, 622, 654
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	370, 569
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	392, 622, 654
BmsI	GCATC	2 cut(s)	232, 385
BoxI	GACNNNNGTC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	572
BseBI	CCWGG	2 cut(s)	622, 654
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	210, 400
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	4 cut(s)	164, 197, 269, 272
BseXI	GCAGC	2 cut(s)	399, 606
Bsh1236I	CGCG	2 cut(s)	44, 305
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	225, 392, 416
BslFI	GGGAC	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	9, 619
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	155, 588
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	42, 246
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	2 cut(s)	44, 305
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	572
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	622, 654
Bst4CI	ACNGT	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	2 cut(s)	8, 549
BstF5I	GGATG	2 cut(s)	210, 400
BstFNI	CGCG	2 cut(s)	44, 305
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	2 cut(s)	9, 619
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	622, 654
BstPAI	GACNNNNGTC	1 cut(s)	567
BstSCI	CCNGG	3 cut(s)	390, 620, 652
BstUI	CGCG	2 cut(s)	44, 305
BstV1I	GCAGC	2 cut(s)	399, 606
BstV2I	GAAGAC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	210, 400
Cac8I	GCNNGC	1 cut(s)	599
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	370, 569
CseI	GACGC	2 cut(s)	294, 310
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	259, 458
CviJI	RGCY	9 cut(s)	96, 167, 234, 329, 372, 412, 494, 586, 597
CviKI_1	RGCY	9 cut(s)	96, 167, 234, 329, 372, 412, 494, 586, 597
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	8, 549
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	620, 652
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	262, 461
FaiI	YATR	3 cut(s)	260, 459, 581
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	2 cut(s)	258, 457
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	42, 246, 413, 595
FokI	GGATG	2 cut(s)	197, 407
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	4 cut(s)	42, 246, 413, 595
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	42, 246, 413, 595
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	3 cut(s)	225, 392, 416
HgaI	GACGC	2 cut(s)	294, 310
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	262, 461
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	441, 547, 639
HpaII	CCGG	3 cut(s)	225, 392, 416
HphI	GGTGA	3 cut(s)	25, 214, 304
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	67, 546
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	127, 284, 319
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	461, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	2 cut(s)	8, 549
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	262, 461
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	267
Lsp1109I	GCAGC	2 cut(s)	399, 606
LweI	GCATC	2 cut(s)	232, 385
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	127
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	2 cut(s)	211, 604
MhlI	GDGCHC	2 cut(s)	155, 588
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	226
MspI	CCGG	3 cut(s)	225, 392, 416
MspR9I	CCNGG	3 cut(s)	392, 622, 654
MvaI	CCWGG	2 cut(s)	622, 654
MvnI	CGCG	2 cut(s)	44, 305
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	262, 461
NlaIV	GGNNCC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	441, 639
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	43, 247, 414, 596
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PshAI	GACNNNNGTC	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	620, 652
PspGI	CCWGG	2 cut(s)	620, 652
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	370, 569
PstNI	CAGNNNCTG	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SatI	GCNGC	4 cut(s)	42, 246, 413, 595
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	370, 569
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	3 cut(s)	392, 622, 654
SduI	GDGCHC	2 cut(s)	155, 588
SfaNI	GCATC	2 cut(s)	232, 385
SinI	GGWCC	1 cut(s)	569
SsiI	CCGC	2 cut(s)	42, 246
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	390, 620, 652
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	1 cut(s)	130
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	2 cut(s)	44, 248
TfiI	GAWTC	2 cut(s)	441, 639
TseI	GCWGC	2 cut(s)	412, 594
TspDTI	ATGAA	3 cut(s)	96, 433, 446
TspGWI	ACGGA	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.