Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016605

Physical Location & Seq

Genomic Coordinates Reverse (-)

17922533 .. 17923180

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCTCAGAGACCAATTACAAGAGCACCAGCGGAGCAGCAAGTATCAGCTGATTCAAGCAGCAGCGACGATGAGGATAGGAAAGCTGTGCAGCAGGTGGCTTCTTCCATGTCCCAACGCGCCATCTCTCAAACCCTAACGGGCACAGCCAACCTAGCCAACCTGCTGCCCACGGGAACCCTCCTGGCCTTGCAACTCCTCGTACCAGTGTTCACCAACAACGGCTCCTGCGACGCCGCCACGCGTCCCATGACCTTGTTCCTGCTCCTCCTCTTGGCCCTCTCCTGCTTCCTGGCCTCCTTCACCGACAGCGTCAAGGCCCCTAACGGACAGGTGTGCTACGGCATAGCTACTCCCAAGGGCCTCTTTCTGTTCGACTCCTCCTCCTCAGCAACAGCAGCTGGTGCAGATTTGACCAAGTACAAGCTGAGATTCATTGATCTGGTTCATGCCCTTCTCTCCGTCTTGGTGTTTGGAGCTGTGGCCTTGAGGGACAAGAACGTGGTGGGCTGCTTCTATCCCATGCCTGCTCATGAAACTCAGGAGGTTTTGGACATTGTGCCCATTGGTGTCGGACTCCTTTGCAGTTTGCTCTTTGTCGTTTTCCCCACCACAAGACATGGCATTGGCTACCCACTCTCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009705 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

216

Amino Acids

22.79

Weight (kDa)

6.26

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	48 - 211	2.3e-67	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24310
fragaria_vesca	FvH4_5g26430
malus_domestica	MD15G1434600.v1.1
prunus_persica	Prupe.1G578700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220711
rosa_laevigata	RLG00000002202
rosa_multiflora	Rmu_sc0001286.1_g000016
rosa_roxburghii	Rroxscaffold_3G00239120
rosa_rugosa	Rorug07G0196900
rosa_samantha	Rh7AG337300 Rh7BG328200 Rh7CG355400 Rh7DG334000
rosa_wichuraiana	Rw7G028780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	2 cut(s)	85, 171
AccII	CGCG	2 cut(s)	120, 244
AciI	CCGC	2 cut(s)	32, 237
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	204, 422
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	2 cut(s)	183, 291
AluBI	AGCT	6 cut(s)	50, 86, 350, 401, 427, 479
AluI	AGCT	6 cut(s)	50, 86, 350, 401, 427, 479
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	2 cut(s)	4, 9
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	6 cut(s)	186, 276, 294, 318, 361, 483
ApeKI	GCWGC	7 cut(s)	37, 60, 63, 91, 166, 398, 510
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	277, 319, 361
AsuHPI	GGTGA	3 cut(s)	205, 295, 633
BaeGI	GKGCMC	2 cut(s)	146, 564
Bbv12I	GWGCWC	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	388
BbvI	GCAGC	7 cut(s)	49, 72, 75, 103, 153, 410, 497
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	2 cut(s)	238, 358
BciT130I	CCWGG	2 cut(s)	185, 293
BcoDI	GTCTC	2 cut(s)	4, 9
BfaI	CTAG	1 cut(s)	155
BfuAI	ACCTGC	2 cut(s)	85, 171
BisI	GCNGC	8 cut(s)	38, 61, 64, 92, 167, 237, 399, 511
BlsI	GCNGC	8 cut(s)	39, 62, 65, 93, 168, 238, 400, 512
Bme1390I	CCNGG	2 cut(s)	185, 293
BmgT120I	GGNCC	3 cut(s)	277, 319, 361
BmiI	GGNNCC	3 cut(s)	178, 226, 321
BmrFI	CCNGG	2 cut(s)	185, 293
Bpu10I	CCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	2 cut(s)	171, 357
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 239, 368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	185, 293
BseDI	CCNNGG	2 cut(s)	171, 357
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	4 cut(s)	20, 402, 419, 554
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	6 cut(s)	188, 257, 260, 370, 373, 376
BseSI	GKGCMC	2 cut(s)	146, 564
BseXI	GCAGC	7 cut(s)	49, 72, 75, 103, 153, 410, 497
BsgI	GTGCAG	2 cut(s)	110, 426
Bsh1236I	CGCG	2 cut(s)	120, 244
BshFI	GGCC	6 cut(s)	188, 278, 296, 320, 363, 485
BsiHKAI	GWGCWC	1 cut(s)	28
BslFI	GGGAC	3 cut(s)	97, 231, 506
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	4, 9
BsmFI	GGGAC	3 cut(s)	97, 231, 506
BsnI	GGCC	6 cut(s)	188, 278, 296, 320, 363, 485
Bso31I	GGTCTC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	28, 146, 564
Bsp143I	GATC	1 cut(s)	439
BspACI	CCGC	2 cut(s)	32, 237
BspANI	GGCC	6 cut(s)	188, 278, 296, 320, 363, 485
BspCNI	CTCAG	4 cut(s)	19, 401, 420, 553
BspFNI	CGCG	2 cut(s)	120, 244
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	178, 226, 321
BspMI	ACCTGC	2 cut(s)	85, 171
BspTNI	GGTCTC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	171, 357
BssMI	GATC	1 cut(s)	439
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	185, 293
BstACI	GRCGYC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	4 cut(s)	6, 388, 428, 540
BstDSI	CCRYGG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	120, 244
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	4, 9
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 398, 404
BstNI	CCWGG	2 cut(s)	185, 293
BstSCI	CCNGG	2 cut(s)	183, 291
BstSLI	GKGCMC	2 cut(s)	146, 564
BstUI	CGCG	2 cut(s)	120, 244
BstV1I	GCAGC	7 cut(s)	49, 72, 75, 103, 153, 410, 497
BsuRI	GGCC	6 cut(s)	188, 278, 296, 320, 363, 485
BtgI	CCRYGG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	2 cut(s)	85, 171
Cac8I	GCNNGC	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	3 cut(s)	277, 319, 361
CseI	GACGC	3 cut(s)	233, 242, 301
Csp6I	GTAC	2 cut(s)	203, 421
CviAII	CATG	6 cut(s)	109, 250, 449, 523, 533, 620
CviQI	GTAC	2 cut(s)	203, 421
DdeI	CTNAG	4 cut(s)	6, 388, 428, 540
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	4
EcoO109I	RGGNCCY	2 cut(s)	319, 361
EcoRII	CCWGG	2 cut(s)	183, 291
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	6 cut(s)	112, 253, 452, 526, 536, 623
FaiI	YATR	7 cut(s)	110, 251, 347, 450, 524, 534, 621
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	3 cut(s)	97, 231, 506
FatI	CATG	6 cut(s)	108, 249, 448, 522, 532, 619
Fnu4HI	GCNGC	8 cut(s)	38, 61, 64, 92, 167, 237, 399, 511
Fsp4HI	GCNGC	8 cut(s)	38, 61, 64, 92, 167, 237, 399, 511
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	8 cut(s)	38, 61, 64, 92, 167, 237, 399, 511
HaeIII	GGCC	6 cut(s)	188, 278, 296, 320, 363, 485
HgaI	GACGC	3 cut(s)	233, 242, 301
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	112, 253, 452, 526, 536, 623
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	53, 377, 432, 576
HphI	GGTGA	3 cut(s)	205, 295, 633
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	9, 575
Hpy188III	TCNNGA	2 cut(s)	533, 542
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	71, 236
HpyAV	CCTTC	2 cut(s)	310, 464
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	91, 193, 407, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 398, 404
HpyF3I	CTNAG	4 cut(s)	6, 388, 428, 540
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	112, 253, 452, 526, 536, 623
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	4 cut(s)	34, 230, 270, 476
Lsp1109I	GCAGC	7 cut(s)	49, 72, 75, 103, 153, 410, 497
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	501
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	28, 146, 564
MluCI	AATT	1 cut(s)	15
MluI	ACGCGT	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	371, 570
MmeI	TCCRAC	1 cut(s)	553
MspA1I	CMGCKG	3 cut(s)	32, 50, 401
MspR9I	CCNGG	2 cut(s)	185, 293
MvaI	CCWGG	2 cut(s)	185, 293
MvnI	CGCG	2 cut(s)	120, 244
MwoI	GCNNNNNNNGC	3 cut(s)	155, 398, 404
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	6 cut(s)	112, 253, 452, 526, 536, 623
NlaIV	GGNNCC	3 cut(s)	178, 226, 321
PagI	TCATGA	1 cut(s)	532
PaqCI	CACCTGC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	53, 432
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	8 cut(s)	39, 62, 65, 93, 168, 238, 400, 512
PleI	GAGTC	2 cut(s)	371, 570
PpsI	GAGTC	2 cut(s)	371, 570
Psp6I	CCWGG	2 cut(s)	183, 291
PspGI	CCWGG	2 cut(s)	183, 291
PspN4I	GGNNCC	3 cut(s)	178, 226, 321
PspPI	GGNCC	3 cut(s)	277, 319, 361
PstNI	CAGNNNCTG	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	2 cut(s)	50, 401
RsaI	GTAC	2 cut(s)	204, 422
RsaNI	GTAC	2 cut(s)	203, 421
SatI	GCNGC	8 cut(s)	38, 61, 64, 92, 167, 237, 399, 511
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	3 cut(s)	277, 319, 361
SchI	GAGTC	2 cut(s)	371, 570
ScrFI	CCNGG	2 cut(s)	185, 293
SduI	GDGCHC	3 cut(s)	28, 146, 564
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	32, 237
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	183, 291
StyI	CCWWGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	53, 432
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	7 cut(s)	37, 60, 63, 91, 166, 398, 510
TspDTI	ATGAA	3 cut(s)	424, 437, 549
TspGWI	ACGGA	2 cut(s)	342, 451
TspRI	CASTG	1 cut(s)	213
Tth111I	GACNNNGTC	1 cut(s)	311
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.