Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011844

Physical Location & Seq

Genomic Coordinates Forward (+)

12686459 .. 12687650

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGAGTCAAAAGTTTCGTTGAAGGTGGGATTGCCTCTGTAATCGCCGGTTGCTCTACTCACCCTCTCGATCTAATCAAGGTTCGTCTTCAGCTTCACGGTGAAGCACCTTCCACCACCACCGTCACTCTCCTCCGTCCAGCTCTCGCTTTCCCCAATTCTTCTCCTGCAGCTTTCCTGGAAACGACTTCTTCAGTCCCCAAAGTAGGACCGATCTCACTCGGAATCAACATAGTCAAATCGGAAGGCGCCGCCGCGTTATTCTCAGGAGTCTCCGCTACACTTCTCCGTCAGACGTTATATTCCACCACCAGGATGGGTCTATACGAAGTGCTTAAGAACAAATGGACTGATCCTGAGTCAGGGAAGTTGAATCTGAGTAGGAAGATCGGTGCAGGGCTAGTCGCTGGTGGAATCGGAGCCGCCGTTGGAAATCCAGCTGACGTGGCGATGGTTAGGATGCAAGCTGACGGGAGGTTACCTTTAGCGCAACGTCGTAACTACGCCGGAGTAGGAGACGCAATCAGGAGCATGGTTAAGGGAGAAGGCGTAACGAGCTTGTGGCGAGGCTCGGCGTTGACGATTAACCGAGCGATGATTGTGACGGCGGCTCAGCTAGCGTCTTACGATCAGTTCAAGGAAGGGATATTGGAGAATGGTGTGATGAATGATGGGCTAGGGACTCACGTGGTAGCGAGTTTTGCGGCGGGGTTTGTTGCTTCGGTTGCGTCTAATCCGGTGGATGTGATAAAGACGAGAGTGATGAATATGAAGGTGGGAGCGTACGACGGCGCGTGGGATTGTGCGGTGAAGACGGTTAAAGCGGAAGGAGCCATGGCTCTTTATAAAGGCTTTGTTCCTACAGTTTGTAGGCAAGGTCCTTTCACTGTTGTTCTCTTCGTTACGTTGGAGCAAGTTAGGAAGCTGCTTCGAGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008272 GO:0008509 GO:0008514 GO:0015075 GO:0015103 GO:0015116 GO:0015117 GO:0015131 GO:0015140 GO:0015141 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015556 GO:0015698 GO:0015709 GO:0015711 GO:0015729 GO:0015740 GO:0015743 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071423 GO:0071702 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902356 GO:1902358 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04964 map04964

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

313

Amino Acids

32.87

Weight (kDa)

9.62

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	3 - 117	4.8e-16	Mitochondrial carrier protein
Mito_carr	PF00153	124 - 218	1.6e-18	Mitochondrial carrier protein
Mito_carr	PF00153	226 - 311	3.9e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24570
fragaria_vesca	FvH4_5g35620
malus_domestica	MD08G1195400.v1.1 MD15G1383200.v1.1
prunus_persica	Prupe.1G529200_v2.0.a1 Prupe.8G067800_v2.0.a1
pyrus_communis	pycom15g34310
rosa_chinensis	RchiOBHm_Chr7g0237101
rosa_laevigata	RLG00000001033
rosa_multiflora	Rmu_sc0000272.1_g000004 Rmu_sc0002131.1_g000039 Rmu_sc0033615.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224510
rosa_rugosa	Rorug07G0301800
rosa_samantha	Rh7AG458000 Rh7BG428700 Rh7CG476100 Rh7DG445300
rosa_wichuraiana	Rw7G037960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	2 cut(s)	257, 794
AciI	CCGC	9 cut(s)	252, 255, 276, 423, 608, 704, 707, 806, 824
AclWI	GGATC	1 cut(s)	347
AcuI	CTGAAG	2 cut(s)	74, 177
AcvI	CACGTG	1 cut(s)	688
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	206, 312, 362
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	23, 373, 637
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	177, 311
AluBI	AGCT	8 cut(s)	94, 143, 173, 440, 467, 558, 616, 925
AluI	AGCT	8 cut(s)	94, 143, 173, 440, 467, 558, 616, 925
Alw26I	GTCTC	2 cut(s)	277, 510
AlwI	GGATC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	170, 925
AspLEI	GCGC	3 cut(s)	251, 490, 794
AspS9I	GGNCC	2 cut(s)	209, 878
AsuHPI	GGTGA	3 cut(s)	53, 113, 820
AsuNHI	GCTAGC	1 cut(s)	616
AvaII	GGWCC	2 cut(s)	209, 878
BanI	GGYRCC	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	688
BbsI	GAAGAC	2 cut(s)	80, 818
BbvI	GCAGC	2 cut(s)	182, 912
BccI	CCATC	3 cut(s)	310, 445, 665
BceAI	ACGGC	3 cut(s)	410, 621, 805
BciT130I	CCWGG	2 cut(s)	179, 313
BcoDI	GTCTC	2 cut(s)	277, 510
BfaI	CTAG	3 cut(s)	401, 617, 677
BfmI	CTRYAG	2 cut(s)	168, 861
BfoI	RGCGCY	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	7 cut(s)	171, 252, 255, 423, 609, 705, 926
BlpI	GCTNAGC	1 cut(s)	612
BlsI	GCNGC	7 cut(s)	172, 253, 256, 424, 610, 706, 927
Bme1390I	CCNGG	2 cut(s)	179, 313
Bme18I	GGWCC	2 cut(s)	209, 878
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	209, 878
BmiI	GGNNCC	3 cut(s)	250, 421, 832
BmrFI	CCNGG	2 cut(s)	179, 313
BmsI	GCATC	1 cut(s)	450
BmtI	GCTAGC	1 cut(s)	620
BpiI	GAAGAC	2 cut(s)	80, 818
Bpu1102I	GCTNAGC	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	834
BsaWI	WCCGGW	1 cut(s)	736
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 441, 534, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 312, 362
Bse118I	RCCGGY	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	179, 313
BseDI	CCNNGG	1 cut(s)	834
BseGI	GGATG	3 cut(s)	321, 465, 748
BseLI	CCNNNNNNNGG	3 cut(s)	206, 312, 362
BseMII	CTCAG	4 cut(s)	279, 348, 368, 626
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	182, 912
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	257, 794
BshNI	GGYRCC	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	48, 507, 737
BsiWI	CGTACG	1 cut(s)	783
BslFI	GGGAC	2 cut(s)	182, 694
BslI	CCNNNNNNNGG	3 cut(s)	206, 312, 362
BsmAI	GTCTC	2 cut(s)	277, 510
BsmBI	CGTCTC	1 cut(s)	510
BsmFI	GGGAC	2 cut(s)	182, 694
Bsp143I	GATC	5 cut(s)	70, 213, 352, 387, 628
Bsp1720I	GCTNAGC	1 cut(s)	612
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	9 cut(s)	252, 255, 276, 423, 608, 704, 707, 806, 824
BspCNI	CTCAG	4 cut(s)	278, 349, 369, 625
BspFNI	CGCG	2 cut(s)	257, 794
BspLI	GGNNCC	3 cut(s)	250, 421, 832
BspMAI	CTGCAG	1 cut(s)	172
BspOI	GCTAGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	834
BssMI	GATC	5 cut(s)	70, 213, 352, 387, 628
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	834
Bst2UI	CCWGG	2 cut(s)	179, 313
Bst4CI	ACNGT	5 cut(s)	101, 124, 817, 865, 889
Bst6I	CTCTTC	1 cut(s)	902
BstACI	GRCGYC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	688
BstC8I	GCNNGC	2 cut(s)	465, 618
BstDEI	CTNAG	4 cut(s)	265, 357, 377, 612
BstDSI	CCRYGG	1 cut(s)	834
BstEII	GGTNACC	1 cut(s)	477
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	321, 465, 748
BstFNI	CGCG	2 cut(s)	257, 794
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	3 cut(s)	251, 490, 794
BstKTI	GATC	5 cut(s)	73, 216, 355, 390, 631
BstMAI	GTCTC	2 cut(s)	277, 510
BstMBI	GATC	5 cut(s)	70, 213, 352, 387, 628
BstMWI	GCNNNNNNNGC	6 cut(s)	446, 555, 617, 701, 725, 830
BstNI	CCWGG	2 cut(s)	179, 313
BstPI	GGTNACC	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	177, 311
BstSFI	CTRYAG	2 cut(s)	168, 861
BstUI	CGCG	2 cut(s)	257, 794
BstV1I	GCAGC	2 cut(s)	182, 912
BstV2I	GAAGAC	2 cut(s)	80, 818
BstXI	CCANNNNNNTGG	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	2 cut(s)	464, 608
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	321, 465, 748
BtsIMutI	CAGTG	1 cut(s)	885
Cac8I	GCNNGC	2 cut(s)	465, 618
CfoI	GCGC	3 cut(s)	251, 490, 794
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	209, 878
CseI	GACGC	3 cut(s)	527, 609, 717
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	2 cut(s)	532, 835
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	4 cut(s)	265, 357, 377, 612
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	5 cut(s)	72, 215, 354, 389, 630
DpnII	GATC	5 cut(s)	70, 213, 352, 387, 628
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
Eco130I	CCWWGG	1 cut(s)	834
Eco47I	GGWCC	2 cut(s)	209, 878
Eco57I	CTGAAG	2 cut(s)	74, 177
Eco72I	CACGTG	1 cut(s)	688
Eco91I	GGTNACC	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	878
EcoO65I	GGTNACC	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	177, 311
EcoT14I	CCWWGG	1 cut(s)	834
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	834
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	2 cut(s)	535, 838
FaiI	YATR	7 cut(s)	233, 301, 325, 533, 770, 836, 846
FaqI	GGGAC	2 cut(s)	182, 694
FatI	CATG	2 cut(s)	531, 834
FauI	CCCGC	1 cut(s)	700
Fnu4HI	GCNGC	7 cut(s)	171, 252, 255, 423, 609, 705, 926
FokI	GGATG	3 cut(s)	328, 472, 755
Fsp4HI	GCNGC	7 cut(s)	171, 252, 255, 423, 609, 705, 926
FspBI	CTAG	3 cut(s)	401, 617, 677
GlaI	GCGC	3 cut(s)	250, 489, 793
GluI	GCNGC	7 cut(s)	171, 252, 255, 423, 609, 705, 926
HaeII	RGCGCY	1 cut(s)	252
HapII	CCGG	3 cut(s)	48, 507, 737
HgaI	GACGC	3 cut(s)	527, 609, 717
HhaI	GCGC	3 cut(s)	251, 490, 794
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	535, 838
Hin6I	GCGC	3 cut(s)	249, 488, 792
HinP1I	GCGC	3 cut(s)	249, 488, 792
HincII	GTYRAC	1 cut(s)	579
HindII	GTYRAC	1 cut(s)	579
HinfI	GANTC	7 cut(s)	6, 225, 270, 359, 373, 414, 682
HpaII	CCGG	3 cut(s)	48, 507, 737
HphI	GGTGA	3 cut(s)	53, 113, 820
Hpy166II	GTNNAC	1 cut(s)	579
Hpy188I	TCNGA	5 cut(s)	224, 244, 294, 378, 419
Hpy188III	TCNNGA	5 cut(s)	68, 267, 356, 526, 932
Hpy8I	GTNNAC	1 cut(s)	579
Hpy99I	CGWCG	2 cut(s)	498, 791
HpyAV	CCTTC	7 cut(s)	17, 120, 239, 539, 635, 766, 821
HpyCH4III	ACNGT	5 cut(s)	101, 124, 817, 865, 889
HpyCH4IV	ACGT	5 cut(s)	296, 444, 493, 687, 905
HpyCH4V	TGCA	3 cut(s)	170, 395, 463
HpyF10VI	GCNNNNNNNGC	6 cut(s)	446, 555, 617, 701, 725, 830
HpyF3I	CTNAG	4 cut(s)	265, 357, 377, 612
HpySE526I	ACGT	5 cut(s)	296, 444, 493, 687, 905
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	535, 838
HspAI	GCGC	3 cut(s)	249, 488, 792
KasI	GGCGCC	1 cut(s)	248
Kzo9I	GATC	5 cut(s)	70, 213, 352, 387, 628
LmnI	GCTCC	5 cut(s)	419, 528, 779, 830, 910
Lsp1109I	GCAGC	2 cut(s)	182, 912
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	3 cut(s)	401, 617, 677
MaeII	ACGT	5 cut(s)	296, 444, 493, 687, 905
MaeIII	GTNAC	6 cut(s)	124, 477, 497, 550, 601, 901
MalI	GATC	5 cut(s)	72, 215, 354, 389, 630
MboI	GATC	5 cut(s)	70, 213, 352, 387, 628
MboII	GAAGA	6 cut(s)	80, 153, 183, 397, 823, 889
MluCI	AATT	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	4 cut(s)	15, 279, 368, 676
MmeI	TCCRAC	2 cut(s)	409, 888
MnlI	CCTC	5 cut(s)	46, 75, 143, 468, 560
MseI	TTAA	4 cut(s)	336, 537, 585, 819
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	3 cut(s)	48, 507, 737
MspR9I	CCNGG	2 cut(s)	179, 313
MvaI	CCWGG	2 cut(s)	179, 313
MvnI	CGCG	2 cut(s)	257, 794
MwoI	GCNNNNNNNGC	6 cut(s)	446, 555, 617, 701, 725, 830
NarI	GGCGCC	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	834
NdeII	GATC	5 cut(s)	70, 213, 352, 387, 628
NheI	GCTAGC	1 cut(s)	616
NlaIII	CATG	2 cut(s)	535, 838
NlaIV	GGNNCC	3 cut(s)	250, 421, 832
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	2 cut(s)	124, 601
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 578
PfeI	GAWTC	3 cut(s)	225, 373, 414
Pfl23II	CGTACG	1 cut(s)	783
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	7 cut(s)	172, 253, 256, 424, 610, 706, 927
PleI	GAGTC	4 cut(s)	14, 278, 367, 676
PluTI	GGCGCC	1 cut(s)	252
PmaCI	CACGTG	1 cut(s)	688
PmlI	CACGTG	1 cut(s)	688
PpsI	GAGTC	4 cut(s)	14, 278, 367, 676
Ppu21I	YACGTR	1 cut(s)	688
PpuMI	RGGWCCY	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	846
Psp5II	RGGWCCY	1 cut(s)	878
Psp6I	CCWGG	2 cut(s)	177, 311
PspCI	CACGTG	1 cut(s)	688
PspEI	GGTNACC	1 cut(s)	477
PspGI	CCWGG	2 cut(s)	177, 311
PspLI	CGTACG	1 cut(s)	783
PspN4I	GGNNCC	3 cut(s)	250, 421, 832
PspPI	GGNCC	2 cut(s)	209, 878
PspPPI	RGGWCCY	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	336, 537, 585, 819
SatI	GCNGC	7 cut(s)	171, 252, 255, 423, 609, 705, 926
Sau3AI	GATC	5 cut(s)	70, 213, 352, 387, 628
Sau96I	GGNCC	2 cut(s)	209, 878
SchI	GAGTC	4 cut(s)	15, 279, 368, 676
ScrFI	CCNGG	2 cut(s)	179, 313
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	2 cut(s)	168, 861
SfoI	GGCGCC	1 cut(s)	250
SinI	GGWCC	2 cut(s)	209, 878
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	9 cut(s)	252, 255, 276, 423, 608, 704, 707, 806, 824
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	401, 617, 677
StyD4I	CCNGG	2 cut(s)	177, 311
StyI	CCWWGG	1 cut(s)	834
TaaI	ACNGT	5 cut(s)	101, 124, 817, 865, 889
TaiI	ACGT	5 cut(s)	299, 447, 496, 690, 908
TaqI	TCGA	2 cut(s)	69, 931
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	1 cut(s)	157
TauI	GCSGC	5 cut(s)	254, 257, 425, 611, 707
TfiI	GAWTC	3 cut(s)	225, 373, 414
Tru1I	TTAA	4 cut(s)	336, 537, 585, 819
Tru9I	TTAA	4 cut(s)	336, 537, 585, 819
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	2 cut(s)	124, 601
TseI	GCWGC	2 cut(s)	170, 925
Tsp45I	GTSAC	2 cut(s)	124, 601
TspDTI	ATGAA	3 cut(s)	680, 779, 785
TspGWI	ACGGA	2 cut(s)	125, 278
TspRI	CASTG	1 cut(s)	892
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	209, 878
XagI	CCTNNNNNAGG	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	3 cut(s)	401, 617, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.