MD15G1383200.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
47202241 .. 47203235
995 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1383200.v1.1.491

Sequence Viewer

Length: 954 bp
ATGGGTATCAAAGGATTTGTCGAGGGAGGCGTCGCTTCCATTGTCGCCGGCTGCTCCACCCACCCGCTGGATCTTATCAAGGTCCGCATGCAGCTCCAGGGCGAGAGCAACCCCGCTCGCGCCGCCGCCCCCCAGCACATCCACAATCTCCGCCCCGCTTTTGCTTATAATTCCCATTCCGCCACCCTTGTTGCCCCGCCGCCCCCACCGGCCACCGTACGTGCCGGTCCAATCTCGGTCGGAGTCAAAATTTTTCAGACCGAAGGCGTTAAGGCGTTGTTCTCGGGAGTCTCAGCAACAGTTCTCCGCCAGACTCTGTACTCCACCACCCGAATGGGCCTCTACGAAATTTTGAAGGTCAAATGGGCCGACCCGAACTCCGGGAACCTGCCACTGGCCCGCAAAATTTTCGCCGGGCTCGTCGCCGGTGGAGTCGGAGCTGCCGTCGGCAACCCCGCCGACGTGGCCATGGTCCGGATGCAAGCCGGCGGCCGCGACTACAAGAACGTGATCGACGCGATTTCCAAGATGGCGAGGAGCGAAGGGGTTCTTAGCCTGTGGCGCGGGTCCAGCCTTACAGTGAACCGCGCTATGATCGTGACGGCGTCGCAGCTGGCGTCGTACGACCAGATCAAGGAGGCGATTCTCGATAGGCACTTGATGAAGGACGGCCTTGGAACGCACGTGACGGCGAGTTTCGCGGCGGGGTTTGTGGCGTCCGTGGCCTCGAACCCGATCGACGTGATTAAGACGAGGGTTATGAACATGAAGGTGGAGGCTGGGCGGGACCCGCCCTACACTGGGGCCCTCGACTGTGCCTTAAAGACTGTGAGGGCGGAGGGGCCGATGGCCCTTTACAAGGGCTTCATCCCTACGATTTCGAGGCAGGGACCGTTCACTGTGGTGCTGTTTGTGACGCTTGAGCAGATCAGGAAAGTGCTTAAGGACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

318

Amino Acids

33.67

Weight (kDa)

9.9

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 5 - 121 1.6e-16 Mitochondrial carrier protein
Mito_carr PF00153 130 - 217 8.5e-20 Mitochondrial carrier protein
Mito_carr PF00153 225 - 316 1.2e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011844)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 67
AccBSI CCGCTC 1 cut(s) 116
AccII CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
AccIII TCCGGA 1 cut(s) 474
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 3 cut(s) 210, 465, 490
AcsI RAATTY 3 cut(s) 249, 348, 405
AcvI CACGTG 1 cut(s) 685
AcyI GRCGYC 4 cut(s) 30, 605, 617, 716
AfaI GTAC 3 cut(s) 219, 320, 623
AfiI CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 1 cut(s) 355
AjiI CACGTC 2 cut(s) 463, 742
AjnI CCWGG 1 cut(s) 96
AleI CACNNNNGTG 1 cut(s) 902
AluBI AGCT 3 cut(s) 94, 440, 613
AluI AGCT 3 cut(s) 94, 440, 613
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 283
Aor13HI TCCGGA 1 cut(s) 474
ApaI GGGCCC 1 cut(s) 808
ApeKI GCWGC 4 cut(s) 51, 91, 440, 610
ApoI RAATTY 3 cut(s) 249, 348, 405
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 3 cut(s) 122, 564, 590
AsuC2I CCSGG 2 cut(s) 382, 415
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 6 cut(s) 82, 227, 472, 567, 787, 890
BaeGI GKGCMC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 2 cut(s) 420, 808
BbrPI CACGTG 1 cut(s) 685
BbvI GCAGC 4 cut(s) 38, 103, 427, 622
BccI CCATC 2 cut(s) 523, 841
BceAI ACGGC 4 cut(s) 428, 618, 685, 705
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 2 cut(s) 382, 415
BcoDI GTCTC 1 cut(s) 295
BfrI CTTAAG 1 cut(s) 941
BfuAI ACCTGC 1 cut(s) 396
BglI GCCNNNNNGGC 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 98, 382, 415
Bme18I GGWCC 6 cut(s) 82, 227, 472, 567, 787, 890
BmeT110I CYCGRG 1 cut(s) 283
BmgBI CACGTC 2 cut(s) 463, 742
BmiI GGNNCC 8 cut(s) 386, 568, 788, 789, 805, 806, 843, 891
BmrFI CCNGG 3 cut(s) 98, 382, 415
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 810
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 2 cut(s) 382, 415
BsaAI YACGTR 2 cut(s) 221, 685
BsaHI GRCGYC 4 cut(s) 30, 605, 617, 716
BsaJI CCNNGG 4 cut(s) 97, 468, 673, 720
BsaWI WCCGGW 1 cut(s) 474
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 429, 459
Bsc4I CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
Bse118I RCCGGY 5 cut(s) 47, 208, 224, 425, 485
Bse1I ACTGG 2 cut(s) 399, 805
BseAI TCCGGA 1 cut(s) 474
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 4 cut(s) 97, 468, 673, 720
BseGI GGATG 3 cut(s) 138, 483, 867
BseLI CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 2 cut(s) 399, 805
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 808
BseX3I CGGCCG 1 cut(s) 490
BseXI GCAGC 4 cut(s) 38, 103, 427, 622
BseYI CCCAGC 2 cut(s) 132, 779
Bsh1236I CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
Bsh1285I CGRYCG 3 cut(s) 240, 493, 738
BsiEI CGRYCG 3 cut(s) 240, 493, 738
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 8 cut(s) 48, 209, 225, 381, 414, 426, 475, 486
BsiWI CGTACG 2 cut(s) 217, 621
BslFI GGGAC 2 cut(s) 800, 903
BslI CCNNNNNNNGG 8 cut(s) 67, 380, 394, 474, 634, 800, 801, 859
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 800, 903
BsoBI CYCGRG 1 cut(s) 283
Bsp120I GGGCCC 1 cut(s) 804
Bsp1286I GDGCHC 2 cut(s) 420, 808
Bsp13I TCCGGA 1 cut(s) 474
Bsp143I GATC 6 cut(s) 70, 510, 594, 630, 735, 927
Bsp19I CCATGG 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 305
BspEI TCCGGA 1 cut(s) 474
BspFNI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
BspLI GGNNCC 8 cut(s) 386, 568, 788, 789, 805, 806, 843, 891
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 1 cut(s) 78
BspTI CTTAAG 1 cut(s) 941
BsrBI CCGCTC 1 cut(s) 116
BsrFI RCCGGY 5 cut(s) 47, 208, 224, 425, 485
BsrI ACTGG 2 cut(s) 399, 805
BssAI RCCGGY 5 cut(s) 47, 208, 224, 425, 485
BssECI CCNNGG 4 cut(s) 97, 468, 673, 720
BssMI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
BssNI GRCGYC 4 cut(s) 30, 605, 617, 716
BssT1I CCWWGG 2 cut(s) 468, 673
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 7 cut(s) 217, 301, 580, 815, 829, 894, 901
BstACI GRCGYC 4 cut(s) 30, 605, 617, 716
BstAFI CTTAAG 1 cut(s) 941
BstBAI YACGTR 2 cut(s) 221, 685
BstC8I GCNNGC 7 cut(s) 49, 89, 118, 400, 483, 487, 615
BstDEI CTNAG 2 cut(s) 292, 551
BstDSI CCRYGG 2 cut(s) 468, 720
BstENI CCTNNNNNAGG 1 cut(s) 857
BstF5I GGATG 3 cut(s) 138, 483, 867
BstFNI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
BstHHI GCGC 3 cut(s) 122, 564, 590
BstKTI GATC 6 cut(s) 73, 513, 597, 633, 738, 930
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
BstMCI CGRYCG 3 cut(s) 240, 493, 738
BstMWI GCNNNNNNNGC 7 cut(s) 122, 464, 561, 570, 698, 722, 790
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 96, 380, 413
BstSLI GKGCMC 1 cut(s) 808
BstUI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
BstV1I GCAGC 4 cut(s) 38, 103, 427, 622
BstX2I RGATCY 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 490
BtgI CCRYGG 2 cut(s) 468, 720
BtrI CACGTC 2 cut(s) 463, 742
BtsCI GGATG 3 cut(s) 138, 483, 867
BtsIMutI CAGTG 4 cut(s) 392, 585, 798, 897
BveI ACCTGC 1 cut(s) 396
Cac8I GCNNGC 7 cut(s) 49, 89, 118, 400, 483, 487, 615
CaiI CAGNNNCTG 1 cut(s) 316
CciNI GCGGCCGC 1 cut(s) 490
CfoI GCGC 3 cut(s) 122, 564, 590
Cfr10I RCCGGY 5 cut(s) 47, 208, 224, 425, 485
CseI GACGC 6 cut(s) 19, 524, 594, 606, 705, 925
Csp6I GTAC 3 cut(s) 218, 319, 622
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 88, 469, 766
CviQI GTAC 3 cut(s) 218, 319, 622
DdeI CTNAG 2 cut(s) 292, 551
DpnI GATC 6 cut(s) 72, 512, 596, 632, 737, 929
DpnII GATC 6 cut(s) 70, 510, 594, 630, 735, 927
EaeI YGGCCR 3 cut(s) 210, 465, 490
EagI CGGCCG 1 cut(s) 490
EciI GGCGGA 4 cut(s) 140, 169, 296, 851
EclXI CGGCCG 1 cut(s) 490
Eco130I CCWWGG 2 cut(s) 468, 673
Eco24I GRGCYC 2 cut(s) 420, 808
Eco47I GGWCC 6 cut(s) 82, 227, 472, 567, 787, 890
Eco52I CGGCCG 1 cut(s) 490
Eco72I CACGTG 1 cut(s) 685
Eco88I CYCGRG 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 857
EcoO109I RGGNCCY 3 cut(s) 787, 804, 805
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 2 cut(s) 468, 673
EcoT38I GRGCYC 2 cut(s) 420, 808
ErhI CCWWGG 2 cut(s) 468, 673
FaeI CATG 3 cut(s) 91, 472, 769
FaiI YATR 6 cut(s) 89, 168, 470, 593, 761, 767
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 2 cut(s) 800, 903
FatI CATG 3 cut(s) 87, 468, 765
FokI GGATG 3 cut(s) 125, 490, 854
FriOI GRGCYC 2 cut(s) 420, 808
GlaI GCGC 3 cut(s) 121, 563, 589
GsaI CCCAGC 2 cut(s) 136, 783
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 8 cut(s) 48, 209, 225, 381, 414, 426, 475, 486
HgaI GACGC 6 cut(s) 19, 524, 594, 606, 705, 925
HhaI GCGC 3 cut(s) 122, 564, 590
Hin1I GRCGYC 4 cut(s) 30, 605, 617, 716
Hin1II CATG 3 cut(s) 91, 472, 769
Hin6I GCGC 3 cut(s) 120, 562, 588
HinP1I GCGC 3 cut(s) 120, 562, 588
HinfI GANTC 5 cut(s) 243, 288, 313, 432, 643
HpaII CCGG 8 cut(s) 48, 209, 225, 381, 414, 426, 475, 486
Hpy166II GTNNAC 2 cut(s) 583, 897
Hpy188I TCNGA 3 cut(s) 242, 258, 437
Hpy188III TCNNGA 5 cut(s) 285, 475, 598, 647, 931
Hpy8I GTNNAC 2 cut(s) 583, 897
Hpy99I CGWCG 8 cut(s) 35, 425, 449, 464, 518, 610, 622, 743
HpyAV CCTTC 5 cut(s) 257, 349, 536, 658, 763
HpyCH4III ACNGT 7 cut(s) 217, 301, 580, 815, 829, 894, 901
HpyCH4IV ACGT 5 cut(s) 220, 462, 507, 684, 741
HpyCH4V TGCA 2 cut(s) 91, 481
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 464, 561, 570, 698, 722, 790
HpyF3I CTNAG 2 cut(s) 292, 551
HpySE526I ACGT 5 cut(s) 220, 462, 507, 684, 741
Hsp92I GRCGYC 4 cut(s) 30, 605, 617, 716
Hsp92II CATG 3 cut(s) 91, 472, 769
HspAI GCGC 3 cut(s) 120, 562, 588
KflI GGGWCCC 1 cut(s) 787
Kpn2I TCCGGA 1 cut(s) 474
KroI GCCGGC 2 cut(s) 47, 485
KroNI GCCGGC 2 cut(s) 49, 487
Kzo9I GATC 6 cut(s) 70, 510, 594, 630, 735, 927
LmnI GCTCC 4 cut(s) 59, 99, 437, 537
Lsp1109I GCAGC 4 cut(s) 38, 103, 427, 622
LweI GCATC 1 cut(s) 468
MaeII ACGT 5 cut(s) 220, 462, 507, 684, 741
MaeIII GTNAC 3 cut(s) 598, 685, 913
MalI GATC 6 cut(s) 72, 512, 596, 632, 737, 929
MbiI CCGCTC 1 cut(s) 116
MboI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 420, 808
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 4 cut(s) 169, 249, 348, 405
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 4 cut(s) 252, 297, 307, 441
MmeI TCCRAC 2 cut(s) 220, 415
Mox20I TGGCCA 1 cut(s) 467
MroI TCCGGA 1 cut(s) 474
MroNI GCCGGC 2 cut(s) 47, 485
MroXI GAANNNNTTC 1 cut(s) 546
MscI TGGCCA 1 cut(s) 467
MseI TTAA 4 cut(s) 270, 747, 821, 942
MslI CAYNNNNRTG 3 cut(s) 332, 770, 902
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 67, 613
MspCI CTTAAG 1 cut(s) 941
MspI CCGG 8 cut(s) 48, 209, 225, 381, 414, 426, 475, 486
MspR9I CCNGG 3 cut(s) 98, 382, 415
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 6 cut(s) 120, 495, 518, 564, 588, 701
MwoI GCNNNNNNNGC 7 cut(s) 122, 464, 561, 570, 698, 722, 790
NaeI GCCGGC 2 cut(s) 49, 487
NciI CCSGG 2 cut(s) 382, 415
NcoI CCATGG 1 cut(s) 468
NdeII GATC 6 cut(s) 70, 510, 594, 630, 735, 927
NgoMIV GCCGGC 2 cut(s) 47, 485
NlaIII CATG 3 cut(s) 91, 472, 769
NlaIV GGNNCC 8 cut(s) 386, 568, 788, 789, 805, 806, 843, 891
NmuCI GTSAC 3 cut(s) 598, 685, 913
NotI GCGGCCGC 1 cut(s) 490
NspI RCATGY 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 902
PaeI GCATGC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 4 cut(s) 27, 417, 441, 614
PdiI GCCGGC 2 cut(s) 49, 487
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 643
Pfl23II CGTACG 2 cut(s) 217, 621
PflFI GACNNNGTC 1 cut(s) 604
PflMI CCANNNNNTGG 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 380
Ple19I CGATCG 1 cut(s) 738
PleI GAGTC 4 cut(s) 251, 296, 307, 440
PmaCI CACGTG 1 cut(s) 685
PmlI CACGTG 1 cut(s) 685
PpsI GAGTC 4 cut(s) 251, 296, 307, 440
Ppu21I YACGTR 2 cut(s) 221, 685
PpuMI RGGWCCY 1 cut(s) 787
PsiI TTATAA 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 96
PspCI CACGTG 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 132, 779
PspGI CCWGG 1 cut(s) 96
PspLI CGTACG 2 cut(s) 217, 621
PspN4I GGNNCC 8 cut(s) 386, 568, 788, 789, 805, 806, 843, 891
PspOMI GGGCCC 1 cut(s) 804
PspPPI RGGWCCY 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 316
PsuI RGATCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 604
PvuI CGATCG 1 cut(s) 738
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 3 cut(s) 219, 320, 623
RsaNI GTAC 3 cut(s) 218, 319, 622
RseI CAYNNNNRTG 3 cut(s) 332, 770, 902
SaqAI TTAA 4 cut(s) 270, 747, 821, 942
Sau3AI GATC 6 cut(s) 70, 510, 594, 630, 735, 927
SchI GAGTC 4 cut(s) 252, 297, 307, 441
ScrFI CCNGG 3 cut(s) 98, 382, 415
SduI GDGCHC 2 cut(s) 420, 808
SfaNI GCATC 1 cut(s) 468
SgrAI CRCCGGYG 1 cut(s) 425
SinI GGWCC 6 cut(s) 82, 227, 472, 567, 787, 890
SmiMI CAYNNNNRTG 3 cut(s) 332, 770, 902
SmlI CTYRAG 2 cut(s) 920, 941
SmoI CTYRAG 2 cut(s) 920, 941
SphI GCATGC 1 cut(s) 91
Sse9I AATT 4 cut(s) 169, 249, 348, 405
StyD4I CCNGG 3 cut(s) 96, 380, 413
StyI CCWWGG 2 cut(s) 468, 673
TaaI ACNGT 7 cut(s) 217, 301, 580, 815, 829, 894, 901
TaiI ACGT 5 cut(s) 223, 465, 510, 687, 744
TaqI TCGA 7 cut(s) 21, 513, 648, 728, 738, 810, 881
TaqII GACCGA 2 cut(s) 226, 275
TasI AATT 4 cut(s) 169, 249, 348, 405
TatI WGTACW 1 cut(s) 318
TauI GCSGC 6 cut(s) 125, 128, 202, 492, 495, 704
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 4 cut(s) 270, 747, 821, 942
Tru9I TTAA 4 cut(s) 270, 747, 821, 942
TscAI CASTG 4 cut(s) 399, 585, 805, 904
TseFI GTSAC 3 cut(s) 598, 685, 913
TseI GCWGC 4 cut(s) 51, 91, 440, 610
Tsp45I GTSAC 3 cut(s) 598, 685, 913
TspDTI ATGAA 4 cut(s) 677, 776, 782, 856
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 4 cut(s) 399, 585, 805, 904
Tth111I GACNNNGTC 1 cut(s) 604
Van91I CCANNNNNTGG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 941
VpaK11BI GGWCC 6 cut(s) 82, 227, 472, 567, 787, 890
XagI CCTNNNNNAGG 1 cut(s) 857
XapI RAATTY 3 cut(s) 249, 348, 405
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 331
XmnI GAANNNNTTC 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.