domain in FBox and BRCT domain containing plant proteins
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 193 | 3.9e-53 | TIR domain |
| TIR_2 | PF13676 | 21 - 129 | 2.3e-15 | TIR domain |
| NB-ARC | PF00931 | 212 - 366 | 9.8e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 435 - 501 | 5.1e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 665 - 775 | 6.1e-13 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 747 - 829 | 5.3e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 767 - 948 | 2.5e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 853 - 931 | 5.3e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 1000 - 1142 | 9.5e-19 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 863, 1142 |
| AarI | CACCTGC | 1 cut(s) | 1518 |
| AatII | GACGTC | 2 cut(s) | 642, 1560 |
| Acc36I | ACCTGC | 1 cut(s) | 1518 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3037 |
| AccBSI | CCGCTC | 1 cut(s) | 698 |
| AccI | GTMKAC | 4 cut(s) | 778, 1635, 2210, 2802 |
| AccII | CGCG | 1 cut(s) | 1640 |
| AciI | CCGC | 5 cut(s) | 643, 669, 698, 1640, 3400 |
| AclWI | GGATC | 3 cut(s) | 152, 338, 818 |
| AcoI | YGGCCR | 1 cut(s) | 2835 |
| AcsI | RAATTY | 5 cut(s) | 288, 481, 585, 728, 3009 |
| AcuI | CTGAAG | 6 cut(s) | 1052, 1323, 1611, 1709, 1925, 2643 |
| AcyI | GRCGYC | 2 cut(s) | 639, 1557 |
| AfaI | GTAC | 6 cut(s) | 357, 1179, 1374, 2073, 2185, 3023 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 848, 1714, 3037, 3142 |
| AflII | CTTAAG | 1 cut(s) | 2951 |
| AflIII | ACRYGT | 1 cut(s) | 1564 |
| AhlI | ACTAGT | 1 cut(s) | 280 |
| AjiI | CACGTC | 1 cut(s) | 1645 |
| AjnI | CCWGG | 3 cut(s) | 1503, 2998, 3067 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1104, 1136 |
| AleI | CACNNNNGTG | 1 cut(s) | 3033 |
| Alw21I | GWGCWC | 3 cut(s) | 8, 1207, 1228 |
| Alw26I | GTCTC | 2 cut(s) | 1830, 2091 |
| Alw44I | GTGCAC | 1 cut(s) | 1224 |
| AlwI | GGATC | 3 cut(s) | 152, 338, 818 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1136 |
| Ama87I | CYCGRG | 3 cut(s) | 1946, 2705, 3194 |
| AoxI | GGCC | 3 cut(s) | 825, 2835, 3174 |
| ApaLI | GTGCAC | 1 cut(s) | 1224 |
| ApeKI | GCWGC | 8 cut(s) | 203, 322, 601, 1383, 1807, 2474, 2757, 3061 |
| ApoI | RAATTY | 5 cut(s) | 288, 481, 585, 728, 3009 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2521, 2553 |
| AseI | ATTAAT | 2 cut(s) | 1887, 3468 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 2739 |
| AspLEI | GCGC | 1 cut(s) | 3569 |
| AspS9I | GGNCC | 7 cut(s) | 2996, 3119, 3174, 3198, 3350, 3397, 3572 |
| AsuC2I | CCSGG | 4 cut(s) | 1524, 2546, 3195, 3196 |
| AsuHPI | GGTGA | 4 cut(s) | 92, 1094, 2475, 3020 |
| AvaI | CYCGRG | 3 cut(s) | 1946, 2705, 3194 |
| AvaII | GGWCC | 6 cut(s) | 2996, 3119, 3198, 3350, 3397, 3572 |
| AxyI | CCTNAGG | 1 cut(s) | 1713 |
| BaeGI | GKGCMC | 3 cut(s) | 1228, 2421, 3270 |
| BalI | TGGCCA | 1 cut(s) | 2837 |
| BanII | GRGCYC | 1 cut(s) | 1207 |
| BauI | CACGAG | 1 cut(s) | 717 |
| BbsI | GAAGAC | 7 cut(s) | 1151, 1459, 1560, 2264, 2649, 3036, 3192 |
| Bbv12I | GWGCWC | 3 cut(s) | 8, 1207, 1228 |
| BbvI | GCAGC | 8 cut(s) | 190, 309, 613, 1370, 1794, 2486, 2744, 3048 |
| BccI | CCATC | 4 cut(s) | 31, 1792, 2794, 3497 |
| BciT130I | CCWGG | 3 cut(s) | 1505, 3000, 3069 |
| BciVI | GTATCC | 1 cut(s) | 1776 |
| BcnI | CCSGG | 4 cut(s) | 1524, 2546, 3195, 3196 |
| BcoDI | GTCTC | 2 cut(s) | 1830, 2091 |
| BcuI | ACTAGT | 1 cut(s) | 280 |
| BfaI | CTAG | 9 cut(s) | 281, 578, 990, 1295, 1322, 2009, 2187, 2597, 3513 |
| BfmI | CTRYAG | 1 cut(s) | 3054 |
| BfrI | CTTAAG | 1 cut(s) | 2951 |
| BfuAI | ACCTGC | 1 cut(s) | 1518 |
| BfuI | GTATCC | 1 cut(s) | 1776 |
| BglII | AGATCT | 3 cut(s) | 1427, 2311, 2599 |
| BisI | GCNGC | 8 cut(s) | 204, 323, 602, 1384, 1808, 2475, 2758, 3062 |
| BlsI | GCNGC | 8 cut(s) | 205, 324, 603, 1385, 1809, 2476, 2759, 3063 |
| BmcAI | AGTACT | 2 cut(s) | 1179, 1374 |
| Bme1390I | CCNGG | 7 cut(s) | 1505, 1524, 2546, 3000, 3069, 3195, 3196 |
| Bme18I | GGWCC | 6 cut(s) | 2996, 3119, 3198, 3350, 3397, 3572 |
| BmeT110I | CYCGRG | 3 cut(s) | 1946, 2705, 3194 |
| BmgBI | CACGTC | 1 cut(s) | 1645 |
| BmgT120I | GGNCC | 7 cut(s) | 2996, 3119, 3174, 3198, 3350, 3397, 3572 |
| BmiI | GGNNCC | 6 cut(s) | 853, 1706, 3121, 3199, 3398, 3574 |
| BmrFI | CCNGG | 7 cut(s) | 1505, 1524, 2546, 3000, 3069, 3195, 3196 |
| BmrI | ACTGGG | 5 cut(s) | 1190, 1238, 1247, 2631, 3570 |
| BmsI | GCATC | 7 cut(s) | 263, 1452, 2639, 2721, 3073, 3470, 3518 |
| BmuI | ACTGGG | 5 cut(s) | 1190, 1238, 1247, 2631, 3570 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2145 |
| BpiI | GAAGAC | 7 cut(s) | 1151, 1459, 1560, 2264, 2649, 3036, 3192 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 211, 243, 698, 730, 700, 732, 1885, 1917 |
| BpmI | CTGGAG | 1 cut(s) | 174 |
| BpuEI | CTTGAG | 1 cut(s) | 577 |
| BpuMI | CCSGG | 4 cut(s) | 1524, 2546, 3195, 3196 |
| BsaAI | YACGTR | 1 cut(s) | 2075 |
| BsaBI | GATNNNNATC | 3 cut(s) | 342, 2316, 2673 |
| BsaHI | GRCGYC | 2 cut(s) | 639, 1557 |
| BsaJI | CCNNGG | 1 cut(s) | 3194 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 848, 1714, 3037, 3142 |
| Bse1I | ACTGG | 8 cut(s) | 605, 1185, 1233, 1242, 1588, 2637, 2901, 3576 |
| Bse21I | CCTNAGG | 1 cut(s) | 1713 |
| Bse3DI | GCAATG | 4 cut(s) | 1326, 2522, 2637, 2933 |
| Bse8I | GATNNNNATC | 3 cut(s) | 342, 2316, 2673 |
| BseBI | CCWGG | 3 cut(s) | 1505, 3000, 3069 |
| BseDI | CCNNGG | 1 cut(s) | 3194 |
| BseJI | GATNNNNATC | 3 cut(s) | 342, 2316, 2673 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 848, 1714, 3037, 3142 |
| BseMI | GCAATG | 4 cut(s) | 1326, 2522, 2637, 2933 |
| BseMII | CTCAG | 9 cut(s) | 59, 59, 486, 1489, 1831, 1883, 2346, 2692, 3161 |
| BseNI | ACTGG | 8 cut(s) | 605, 1185, 1233, 1242, 1588, 2637, 2901, 3576 |
| BseRI | GAGGAG | 4 cut(s) | 33, 2180, 2413, 3440 |
| BseSI | GKGCMC | 3 cut(s) | 1228, 2421, 3270 |
| BseXI | GCAGC | 8 cut(s) | 190, 309, 613, 1370, 1794, 2486, 2744, 3048 |
| BseYI | CCCAGC | 1 cut(s) | 3335 |
| BsgI | GTGCAG | 2 cut(s) | 1552, 2493 |
| Bsh1236I | CGCG | 1 cut(s) | 1640 |
| BshFI | GGCC | 3 cut(s) | 827, 2837, 3176 |
| BsiHKAI | GWGCWC | 3 cut(s) | 8, 1207, 1228 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1946, 2705, 3194 |
| BsiSI | CCGG | 3 cut(s) | 1523, 2546, 3195 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 848, 1714, 3037, 3142 |
| BsmAI | GTCTC | 2 cut(s) | 1830, 2091 |
| BsmI | GAATGC | 1 cut(s) | 1088 |
| BsnI | GGCC | 3 cut(s) | 827, 2837, 3176 |
| BsoBI | CYCGRG | 3 cut(s) | 1946, 2705, 3194 |
| Bsp1286I | GDGCHC | 5 cut(s) | 8, 1207, 1228, 2421, 3270 |
| Bsp143I | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| BspACI | CCGC | 5 cut(s) | 643, 669, 698, 1640, 3400 |
| BspANI | GGCC | 3 cut(s) | 827, 2837, 3176 |
| BspCNI | CTCAG | 9 cut(s) | 58, 60, 485, 1488, 1830, 1884, 2345, 2691, 3162 |
| BspFNI | CGCG | 1 cut(s) | 1640 |
| BspHI | TCATGA | 5 cut(s) | 397, 844, 1054, 3289, 3595 |
| BspLI | GGNNCC | 6 cut(s) | 853, 1706, 3121, 3199, 3398, 3574 |
| BspMI | ACCTGC | 1 cut(s) | 1518 |
| BspPI | GGATC | 3 cut(s) | 152, 338, 818 |
| BspQI | GCTCTTC | 1 cut(s) | 1195 |
| BspTI | CTTAAG | 1 cut(s) | 2951 |
| BsrBI | CCGCTC | 1 cut(s) | 698 |
| BsrDI | GCAATG | 4 cut(s) | 1326, 2522, 2637, 2933 |
| BsrI | ACTGG | 8 cut(s) | 605, 1185, 1233, 1242, 1588, 2637, 2901, 3576 |
| BssECI | CCNNGG | 1 cut(s) | 3194 |
| BssMI | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| BssNI | GRCGYC | 2 cut(s) | 639, 1557 |
| BssSI | CACGAG | 1 cut(s) | 717 |
| Bst2BI | CACGAG | 1 cut(s) | 717 |
| Bst2UI | CCWGG | 3 cut(s) | 1505, 3000, 3069 |
| Bst4CI | ACNGT | 4 cut(s) | 1223, 2481, 2888, 3055 |
| Bst6I | CTCTTC | 4 cut(s) | 1071, 1195, 1237, 1299 |
| BstACI | GRCGYC | 2 cut(s) | 639, 1557 |
| BstAFI | CTTAAG | 1 cut(s) | 2951 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 200, 1471 |
| BstBAI | YACGTR | 1 cut(s) | 2075 |
| BstC8I | GCNNGC | 2 cut(s) | 2065, 2762 |
| BstEII | GGTNACC | 1 cut(s) | 1100 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 846, 1712 |
| BstFNI | CGCG | 1 cut(s) | 1640 |
| BstHHI | GCGC | 1 cut(s) | 3569 |
| BstKTI | GATC | 9 cut(s) | 160, 346, 813, 1294, 1360, 1430, 2314, 2602, 3247 |
| BstMAI | GTCTC | 2 cut(s) | 1830, 2091 |
| BstMBI | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 200, 314, 1471, 2471, 3462, 3527 |
| BstNI | CCWGG | 3 cut(s) | 1505, 3000, 3069 |
| BstNSI | RCATGY | 2 cut(s) | 1335, 1568 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2145 |
| BstPI | GGTNACC | 1 cut(s) | 1100 |
| BstSCI | CCNGG | 7 cut(s) | 1503, 1522, 2544, 2998, 3067, 3193, 3194 |
| BstSFI | CTRYAG | 1 cut(s) | 3054 |
| BstSLI | GKGCMC | 3 cut(s) | 1228, 2421, 3270 |
| BstUI | CGCG | 1 cut(s) | 1640 |
| BstV1I | GCAGC | 8 cut(s) | 190, 309, 613, 1370, 1794, 2486, 2744, 3048 |
| BstV2I | GAAGAC | 7 cut(s) | 1151, 1459, 1560, 2264, 2649, 3036, 3192 |
| BstX2I | RGATCY | 4 cut(s) | 810, 1427, 2311, 2599 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3608 |
| BstYI | RGATCY | 4 cut(s) | 810, 1427, 2311, 2599 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1713 |
| BsuI | GTATCC | 1 cut(s) | 1776 |
| BsuRI | GGCC | 3 cut(s) | 827, 2837, 3176 |
| BtgZI | GCGATG | 1 cut(s) | 3493 |
| BtrI | CACGTC | 1 cut(s) | 1645 |
| BtsI | GCAGTG | 3 cut(s) | 117, 2074, 2287 |
| BtsIMutI | CAGTG | 9 cut(s) | 53, 117, 1226, 1228, 1664, 2074, 2287, 2644, 3167 |
| BveI | ACCTGC | 1 cut(s) | 1518 |
| Cac8I | GCNNGC | 2 cut(s) | 2065, 2762 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1136 |
| CciI | TCATGA | 5 cut(s) | 397, 844, 1054, 3289, 3595 |
| CfoI | GCGC | 1 cut(s) | 3569 |
| Cfr13I | GGNCC | 7 cut(s) | 2996, 3119, 3174, 3198, 3350, 3397, 3572 |
| Cfr9I | CCCGGG | 1 cut(s) | 3194 |
| CseI | GACGC | 2 cut(s) | 1646, 2813 |
| Csp6I | GTAC | 6 cut(s) | 356, 1178, 1373, 2072, 2184, 3022 |
| CviQI | GTAC | 6 cut(s) | 356, 1178, 1373, 2072, 2184, 3022 |
| DpnI | GATC | 9 cut(s) | 159, 345, 812, 1293, 1359, 1429, 2313, 2601, 3246 |
| DpnII | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| DraI | TTTAAA | 1 cut(s) | 2673 |
| EaeI | YGGCCR | 1 cut(s) | 2835 |
| Eam1104I | CTCTTC | 4 cut(s) | 1071, 1195, 1237, 1299 |
| EarI | CTCTTC | 4 cut(s) | 1071, 1195, 1237, 1299 |
| Ecl136II | GAGCTC | 1 cut(s) | 1205 |
| Eco24I | GRGCYC | 1 cut(s) | 1207 |
| Eco32I | GATATC | 1 cut(s) | 3304 |
| Eco47I | GGWCC | 6 cut(s) | 2996, 3119, 3198, 3350, 3397, 3572 |
| Eco53kI | GAGCTC | 1 cut(s) | 1205 |
| Eco57I | CTGAAG | 6 cut(s) | 1052, 1323, 1611, 1709, 1925, 2643 |
| Eco81I | CCTNAGG | 1 cut(s) | 1713 |
| Eco88I | CYCGRG | 3 cut(s) | 1946, 2705, 3194 |
| Eco91I | GGTNACC | 1 cut(s) | 1100 |
| EcoICRI | GAGCTC | 1 cut(s) | 1205 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 846, 1712 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3572 |
| EcoO65I | GGTNACC | 1 cut(s) | 1100 |
| EcoRI | GAATTC | 2 cut(s) | 288, 481 |
| EcoRII | CCWGG | 3 cut(s) | 1503, 2998, 3067 |
| EcoRV | GATATC | 1 cut(s) | 3304 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 1467 |
| EcoT38I | GRGCYC | 1 cut(s) | 1207 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 783, 815, 1104, 1136 |
| FauI | CCCGC | 1 cut(s) | 662 |
| FblI | GTMKAC | 4 cut(s) | 778, 1635, 2210, 2802 |
| Fnu4HI | GCNGC | 8 cut(s) | 204, 323, 602, 1384, 1808, 2475, 2758, 3062 |
| FriOI | GRGCYC | 1 cut(s) | 1207 |
| Fsp4HI | GCNGC | 8 cut(s) | 204, 323, 602, 1384, 1808, 2475, 2758, 3062 |
| FspBI | CTAG | 9 cut(s) | 281, 578, 990, 1295, 1322, 2009, 2187, 2597, 3513 |
| GlaI | GCGC | 1 cut(s) | 3568 |
| GluI | GCNGC | 8 cut(s) | 204, 323, 602, 1384, 1808, 2475, 2758, 3062 |
| GsaI | CCCAGC | 1 cut(s) | 3339 |
| GsuI | CTGGAG | 1 cut(s) | 174 |
| HaeIII | GGCC | 3 cut(s) | 827, 2837, 3176 |
| HapII | CCGG | 3 cut(s) | 1523, 2546, 3195 |
| HgaI | GACGC | 2 cut(s) | 1646, 2813 |
| HhaI | GCGC | 1 cut(s) | 3569 |
| Hin1I | GRCGYC | 2 cut(s) | 639, 1557 |
| Hin6I | GCGC | 1 cut(s) | 3567 |
| HinP1I | GCGC | 1 cut(s) | 3567 |
| HincII | GTYRAC | 5 cut(s) | 261, 1915, 2125, 2884, 3233 |
| HindII | GTYRAC | 5 cut(s) | 261, 1915, 2125, 2884, 3233 |
| HindIII | AAGCTT | 4 cut(s) | 1907, 2384, 2729, 2762 |
| HpaI | GTTAAC | 2 cut(s) | 2125, 2884 |
| HpaII | CCGG | 3 cut(s) | 1523, 2546, 3195 |
| HphI | GGTGA | 4 cut(s) | 92, 1094, 2475, 3020 |
| Hpy99I | CGWCG | 1 cut(s) | 3206 |
| HpyCH4III | ACNGT | 4 cut(s) | 1223, 2481, 2888, 3055 |
| HpyCH4IV | ACGT | 6 cut(s) | 639, 1557, 1644, 2074, 2207, 2831 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 200, 314, 1471, 2471, 3462, 3527 |
| HpySE526I | ACGT | 6 cut(s) | 639, 1557, 1644, 2074, 2207, 2831 |
| Hsp92I | GRCGYC | 2 cut(s) | 639, 1557 |
| HspAI | GCGC | 1 cut(s) | 3567 |
| KspAI | GTTAAC | 2 cut(s) | 2125, 2884 |
| Kzo9I | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| LguI | GCTCTTC | 1 cut(s) | 1195 |
| LmnI | GCTCC | 4 cut(s) | 851, 2167, 3427, 3506 |
| Lsp1109I | GCAGC | 8 cut(s) | 190, 309, 613, 1370, 1794, 2486, 2744, 3048 |
| LweI | GCATC | 7 cut(s) | 263, 1452, 2639, 2721, 3073, 3470, 3518 |
| MaeI | CTAG | 9 cut(s) | 281, 578, 990, 1295, 1322, 2009, 2187, 2597, 3513 |
| MaeII | ACGT | 6 cut(s) | 639, 1557, 1644, 2074, 2207, 2831 |
| MalI | GATC | 9 cut(s) | 159, 345, 812, 1293, 1359, 1429, 2313, 2601, 3246 |
| MbiI | CCGCTC | 1 cut(s) | 698 |
| MboI | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| MfeI | CAATTG | 1 cut(s) | 207 |
| MflI | RGATCY | 4 cut(s) | 810, 1427, 2311, 2599 |
| MhlI | GDGCHC | 5 cut(s) | 8, 1207, 1228, 2421, 3270 |
| MlsI | TGGCCA | 1 cut(s) | 2837 |
| MluNI | TGGCCA | 1 cut(s) | 2837 |
| MlyI | GAGTC | 4 cut(s) | 1610, 1634, 1642, 1903 |
| MmeI | TCCRAC | 1 cut(s) | 562 |
| Mox20I | TGGCCA | 1 cut(s) | 2837 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 1467 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 2739 |
| MscI | TGGCCA | 1 cut(s) | 2837 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1610, 3033, 3263, 3495 |
| Msp20I | TGGCCA | 1 cut(s) | 2837 |
| MspA1I | CMGCKG | 2 cut(s) | 1383, 1833 |
| MspCI | CTTAAG | 1 cut(s) | 2951 |
| MspI | CCGG | 3 cut(s) | 1523, 2546, 3195 |
| MspR9I | CCNGG | 7 cut(s) | 1505, 1524, 2546, 3000, 3069, 3195, 3196 |
| MunI | CAATTG | 1 cut(s) | 207 |
| Mva1269I | GAATGC | 1 cut(s) | 1088 |
| MvaI | CCWGG | 3 cut(s) | 1505, 3000, 3069 |
| MvnI | CGCG | 1 cut(s) | 1640 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 200, 314, 1471, 2471, 3462, 3527 |
| NciI | CCSGG | 4 cut(s) | 1524, 2546, 3195, 3196 |
| NdeII | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| NlaIV | GGNNCC | 6 cut(s) | 853, 1706, 3121, 3199, 3398, 3574 |
| NmuCI | GTSAC | 9 cut(s) | 719, 878, 1100, 1487, 1645, 1895, 2481, 2537, 2606 |
| NsiI | ATGCAT | 2 cut(s) | 256, 1467 |
| NspI | RCATGY | 2 cut(s) | 1335, 1568 |
| OliI | CACNNNNGTG | 1 cut(s) | 3033 |
| PaeR7I | CTCGAG | 1 cut(s) | 1946 |
| PagI | TCATGA | 5 cut(s) | 397, 844, 1054, 3289, 3595 |
| PaqCI | CACCTGC | 1 cut(s) | 1518 |
| PciI | ACATGT | 1 cut(s) | 1564 |
| PciSI | GCTCTTC | 1 cut(s) | 1195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1766 |
| PctI | GAATGC | 1 cut(s) | 1088 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 2739 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3037 |
| PfoI | TCCNGGA | 1 cut(s) | 2998 |
| PkrI | GCNGC | 8 cut(s) | 205, 324, 603, 1385, 1809, 2476, 2759, 3063 |
| PleI | GAGTC | 4 cut(s) | 1610, 1633, 1642, 1902 |
| PpsI | GAGTC | 4 cut(s) | 1610, 1633, 1642, 1902 |
| Ppu21I | YACGTR | 1 cut(s) | 2075 |
| PpuMI | RGGWCCY | 1 cut(s) | 3572 |
| PscI | ACATGT | 1 cut(s) | 1564 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2145 |
| PshBI | ATTAAT | 2 cut(s) | 1887, 3468 |
| PsiI | TTATAA | 2 cut(s) | 863, 1142 |
| Psp124BI | GAGCTC | 1 cut(s) | 1207 |
| Psp5II | RGGWCCY | 1 cut(s) | 3572 |
| Psp6I | CCWGG | 3 cut(s) | 1503, 2998, 3067 |
| PspEI | GGTNACC | 1 cut(s) | 1100 |
| PspFI | CCCAGC | 1 cut(s) | 3335 |
| PspGI | CCWGG | 3 cut(s) | 1503, 2998, 3067 |
| PspN4I | GGNNCC | 6 cut(s) | 853, 1706, 3121, 3199, 3398, 3574 |
| PspPI | GGNCC | 7 cut(s) | 2996, 3119, 3174, 3198, 3350, 3397, 3572 |
| PspPPI | RGGWCCY | 1 cut(s) | 3572 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1136 |
| PsuI | RGATCY | 4 cut(s) | 810, 1427, 2311, 2599 |
| PvuII | CAGCTG | 2 cut(s) | 1383, 1833 |
| RsaI | GTAC | 6 cut(s) | 357, 1179, 1374, 2073, 2185, 3023 |
| RsaNI | GTAC | 6 cut(s) | 356, 1178, 1373, 2072, 2184, 3022 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1610, 3033, 3263, 3495 |
| SacI | GAGCTC | 1 cut(s) | 1207 |
| SapI | GCTCTTC | 1 cut(s) | 1195 |
| SatI | GCNGC | 8 cut(s) | 204, 323, 602, 1384, 1808, 2475, 2758, 3062 |
| Sau3AI | GATC | 9 cut(s) | 157, 343, 810, 1291, 1357, 1427, 2311, 2599, 3244 |
| Sau96I | GGNCC | 7 cut(s) | 2996, 3119, 3174, 3198, 3350, 3397, 3572 |
| ScaI | AGTACT | 2 cut(s) | 1179, 1374 |
| SchI | GAGTC | 4 cut(s) | 1610, 1634, 1642, 1903 |
| ScrFI | CCNGG | 7 cut(s) | 1505, 1524, 2546, 3000, 3069, 3195, 3196 |
| SduI | GDGCHC | 5 cut(s) | 8, 1207, 1228, 2421, 3270 |
| SfaNI | GCATC | 7 cut(s) | 263, 1452, 2639, 2721, 3073, 3470, 3518 |
| SfcI | CTRYAG | 1 cut(s) | 3054 |
| Sfr274I | CTCGAG | 1 cut(s) | 1946 |
| SinI | GGWCC | 6 cut(s) | 2996, 3119, 3198, 3350, 3397, 3572 |
| SlaI | CTCGAG | 1 cut(s) | 1946 |
| SmaI | CCCGGG | 1 cut(s) | 3196 |
| SmiI | ATTTAAAT | 1 cut(s) | 2673 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1610, 3033, 3263, 3495 |
| SmlI | CTYRAG | 3 cut(s) | 592, 1946, 2951 |
| SmoI | CTYRAG | 3 cut(s) | 592, 1946, 2951 |
| SpeI | ACTAGT | 1 cut(s) | 280 |
| SsiI | CCGC | 5 cut(s) | 643, 669, 698, 1640, 3400 |
| SspI | AATATT | 2 cut(s) | 935, 1317 |
| SspMI | CTAG | 9 cut(s) | 281, 578, 990, 1295, 1322, 2009, 2187, 2597, 3513 |
| SstI | GAGCTC | 1 cut(s) | 1207 |
| StyD4I | CCNGG | 7 cut(s) | 1503, 1522, 2544, 2998, 3067, 3193, 3194 |
| SwaI | ATTTAAAT | 1 cut(s) | 2673 |
| TaaI | ACNGT | 4 cut(s) | 1223, 2481, 2888, 3055 |
| TaiI | ACGT | 6 cut(s) | 642, 1560, 1647, 2077, 2210, 2834 |
| TaqI | TCGA | 6 cut(s) | 218, 1041, 1360, 1812, 1947, 3047 |
| TatI | WGTACW | 2 cut(s) | 1177, 1372 |
| TscAI | CASTG | 9 cut(s) | 53, 124, 1228, 1233, 1671, 2074, 2287, 2644, 3174 |
| TseFI | GTSAC | 9 cut(s) | 719, 878, 1100, 1487, 1645, 1895, 2481, 2537, 2606 |
| TseI | GCWGC | 8 cut(s) | 203, 322, 601, 1383, 1807, 2474, 2757, 3061 |
| Tsp45I | GTSAC | 9 cut(s) | 719, 878, 1100, 1487, 1645, 1895, 2481, 2537, 2606 |
| TspGWI | ACGGA | 5 cut(s) | 1359, 1436, 1758, 1759, 3190 |
| TspMI | CCCGGG | 1 cut(s) | 3194 |
| TspRI | CASTG | 9 cut(s) | 53, 124, 1228, 1233, 1671, 2074, 2287, 2644, 3174 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3037 |
| Vha464I | CTTAAG | 1 cut(s) | 2951 |
| VneI | GTGCAC | 1 cut(s) | 1224 |
| VpaK11BI | GGWCC | 6 cut(s) | 2996, 3119, 3198, 3350, 3397, 3572 |
| VspI | ATTAAT | 2 cut(s) | 1887, 3468 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 846, 1712 |
| XapI | RAATTY | 5 cut(s) | 288, 481, 585, 728, 3009 |
| XbaI | TCTAGA | 1 cut(s) | 1294 |
| XceI | RCATGY | 2 cut(s) | 1335, 1568 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 956 |
| XhoI | CTCGAG | 1 cut(s) | 1946 |
| XmaI | CCCGGG | 1 cut(s) | 3194 |
| XmiI | GTMKAC | 4 cut(s) | 778, 1635, 2210, 2802 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 2739 |
| XspI | CTAG | 9 cut(s) | 281, 578, 990, 1295, 1322, 2009, 2187, 2597, 3513 |
| ZraI | GACGTC | 2 cut(s) | 640, 1558 |
| ZrmI | AGTACT | 2 cut(s) | 1179, 1374 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 1467 |