Rmu_sc0004142.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004142.1
OG0000062
Physical Location & Seq
Reverse (-)
83860 .. 84378
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004142.1_g000020.1.cds

Sequence Viewer

Length: 519 bp
atggtcaaagctgagatccatttaatccatggttatagcggagagaatatttatcgtgttgaaagcgcacctcccttgctaggagtctctggtgttaaatatttgtctcttttaactcctgtgttttcggcacgttctctgccttccttcgataatttgaagcatttgaaggttggcctgtttcgttgctcttattggggatatgtaatcgagctgctcaagagatcaccaaatctggaagatattgttttggatatttggacttggacatggggtaaacaagaatatgtgaaagggtaccggcccttcaatccaccagaggttgttcctatttgtgtttcctcgcacctcaggaccatttctatcattaatttcatgggatatgatgatgagtttgaagtggtcaaatatttgttgcagtatagtgaagttcttaggtggttaactgtttcaacccttgagagtcatctttttaagagtcatcgcggatgttgcatctcctatagtcctatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

172

Amino Acids

19.88

Weight (kDa)

7.7

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 297
AccB1I GGYRCC 1 cut(s) 297
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 39, 486
AclWI GGATC 1 cut(s) 10
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 6 cut(s) 62, 160, 169, 310, 398, 453
AluBI AGCT 2 cut(s) 11, 214
AluI AGCT 2 cut(s) 11, 214
Alw26I GTCTC 2 cut(s) 91, 111
AlwI GGATC 1 cut(s) 10
AoxI GGCC 2 cut(s) 175, 302
ApeKI GCWGC 1 cut(s) 214
AseI ATTAAT 1 cut(s) 369
Asp718I GGTACC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 303, 354
AsuHPI GGTGA 1 cut(s) 219
AvaII GGWCC 1 cut(s) 354
AxyI CCTNAGG 1 cut(s) 350
BanI GGYRCC 1 cut(s) 297
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BbvI GCAGC 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 91, 111
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 502
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 303, 354
BmiI GGNNCC 1 cut(s) 299
BmsI GCATC 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 203, 479
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 300
Bse21I CCTNAGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 2 cut(s) 177, 304
BshNI GGYRCC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 91, 111
BsnI GGCC 2 cut(s) 177, 304
Bsp143I GATC 2 cut(s) 15, 224
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 2 cut(s) 39, 486
BspANI GGCC 2 cut(s) 177, 304
BspCNI CTCAG 2 cut(s) 4, 363
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 299
BspPI GGATC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 300
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 15, 224
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 448
BstDEI CTNAG 3 cut(s) 12, 350, 434
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 18, 227
BstMAI GTCTC 2 cut(s) 91, 111
BstMBI GATC 2 cut(s) 15, 224
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 502
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 2 cut(s) 177, 304
BtgI CCRYGG 1 cut(s) 28
BtgZI GCGATG 1 cut(s) 467
BtsCI GGATG 1 cut(s) 494
CfoI GCGC 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 303, 354
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 29, 270, 376
CviJI RGCY 4 cut(s) 11, 177, 214, 304
CviKI_1 RGCY 4 cut(s) 11, 177, 214, 304
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 12, 350, 434
DpnI GATC 2 cut(s) 17, 226
DpnII GATC 2 cut(s) 15, 224
Eco130I CCWWGG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 3 cut(s) 32, 273, 379
FatI CATG 3 cut(s) 28, 269, 375
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 177, 304
HapII CCGG 1 cut(s) 301
HhaI GCGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 32, 273, 379
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 3 cut(s) 84, 463, 478
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 1 cut(s) 301
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 278, 444
Hpy188III TCNNGA 3 cut(s) 220, 236, 352
Hpy8I GTNNAC 2 cut(s) 278, 444
HpyAV CCTTC 4 cut(s) 153, 157, 163, 316
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 418, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 3 cut(s) 12, 350, 434
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 3 cut(s) 32, 273, 379
HspAI GCGC 1 cut(s) 66
KpnI GGTACC 1 cut(s) 301
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 15, 224
LpnPI CCDG 7 cut(s) 75, 132, 191, 221, 314, 330, 337
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 504
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 133
MalI GATC 2 cut(s) 17, 226
MboI GATC 2 cut(s) 15, 224
MboII GAAGA 1 cut(s) 251
MflI RGATCY 1 cut(s) 15
MluCI AATT 3 cut(s) 154, 370, 514
MlyI GAGTC 3 cut(s) 93, 472, 487
MnlI CCTC 4 cut(s) 81, 313, 352, 359
MseI TTAA 6 cut(s) 23, 96, 113, 369, 443, 474
MspI CCGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 492
NcoI CCATGG 1 cut(s) 28
NdeII GATC 2 cut(s) 15, 224
NlaIII CATG 3 cut(s) 32, 273, 379
NlaIV GGNNCC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 3 cut(s) 92, 471, 486
PpsI GAGTC 3 cut(s) 92, 471, 486
PshBI ATTAAT 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 2 cut(s) 303, 354
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 6 cut(s) 23, 96, 113, 369, 443, 474
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 2 cut(s) 15, 224
Sau96I GGNCC 2 cut(s) 303, 354
SchI GAGTC 3 cut(s) 93, 472, 487
SetI ASST 8 cut(s) 13, 73, 136, 174, 216, 324, 351, 440
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 1 cut(s) 502
SinI GGWCC 1 cut(s) 354
SmlI CTYRAG 2 cut(s) 218, 458
SmoI CTYRAG 2 cut(s) 218, 458
Sse9I AATT 3 cut(s) 154, 370, 514
SsiI CCGC 2 cut(s) 39, 486
SspI AATATT 3 cut(s) 49, 101, 410
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 150, 210
TasI AATT 3 cut(s) 154, 370, 514
Tru1I TTAA 6 cut(s) 23, 96, 113, 369, 443, 474
Tru9I TTAA 6 cut(s) 23, 96, 113, 369, 443, 474
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.