Rh5DG201100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000062
Physical Location & Seq
Forward (+)
22319647 .. 22320165
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG201100.1

Sequence Viewer

Length: 519 bp
ATGTCAGAGGTTCAAGCAAAAAGAGTTAATAAAGATAGGATTAGTGCACTACCAGATGAAGTCCTTTATCACATCCTTTCGTTCCTTAAAACCGAAGATGTTGTGATGACCATCTTTTTGTCTAGAAGATGGAAGAACATTTGGGCCTCTGTTCCGAGTCTAGATTTCTGTGACCAAGAAAACCCTGACACTATTCCTTTTCCGAAGTTTATTGATAATGTACTCTTCTTCCGTGACTCAAAAGACATTCATAAGTTTCGTCTCCATTCCATTAGAGTTGAGGATTTTGATCGTATTTGTGGTTGGCTTGGCGCTGCCATTAGGCGCAATGTTGTTGAACTTGATCTTTCTGTTAAGTATTATGGAGGTGATGAGGATCACCAGCAGATCTTTAAGTTGCCTAAGAGTGTTTTCACATGTAAAACTCTGAGGGTTTTGAAATTGTGGTCAAATTTTATTATCAATGCTCCTGAATCAGGGTGTTTCCTGAATCTCAAATCTCTCTGTGTTCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

172

Amino Acids

20.16

Weight (kDa)

8.27

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 53 1.2e-08 F-box domain
F-box-like PF12937 14 - 47 7.1e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 451
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 476
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 3 cut(s) 14, 338, 439
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 1 cut(s) 384
AoxI GGCC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 451
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
AspLEI GCGC 2 cut(s) 314, 327
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 371, 380
BaeGI GKGCMC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 119, 123
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 2 cut(s) 123, 161
BfoI RGCGCY 1 cut(s) 315
BglII AGATCT 1 cut(s) 387
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 144
BsaBI GATNNNNATC 3 cut(s) 110, 288, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 3 cut(s) 110, 288, 375
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 3 cut(s) 110, 288, 375
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 289, 343, 376, 387
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 420
BspPI GGATC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 334
BssMI GATC 4 cut(s) 289, 343, 376, 387
Bst6I CTCTTC 1 cut(s) 230
BstDEI CTNAG 2 cut(s) 402, 428
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 2 cut(s) 314, 327
BstKTI GATC 4 cut(s) 292, 346, 379, 390
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 4 cut(s) 289, 343, 376, 387
BstNSI RCATGY 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 72
CfoI GCGC 2 cut(s) 314, 327
Cfr13I GGNCC 1 cut(s) 144
Csp6I GTAC 1 cut(s) 221
CviAII CATG 1 cut(s) 417
CviJI RGCY 2 cut(s) 146, 307
CviKI_1 RGCY 2 cut(s) 146, 307
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 402, 428
DpnI GATC 4 cut(s) 291, 345, 378, 389
DpnII GATC 4 cut(s) 289, 343, 376, 387
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 1 cut(s) 420
FaiI YATR 3 cut(s) 252, 363, 418
FatI CATG 1 cut(s) 416
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 123, 161
GlaI GCGC 2 cut(s) 313, 326
GluI GCNGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 146
HhaI GCGC 2 cut(s) 314, 327
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 2 cut(s) 312, 325
HinP1I GCGC 2 cut(s) 312, 325
HinfI GANTC 4 cut(s) 157, 236, 473, 490
HphI GGTGA 2 cut(s) 371, 380
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 7, 156, 204, 429
Hpy188III TCNNGA 4 cut(s) 123, 161, 470, 487
Hpy8I GTNNAC 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 402, 428
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 2 cut(s) 312, 325
Kzo9I GATC 4 cut(s) 289, 343, 376, 387
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 6 cut(s) 66, 198, 395, 462, 483, 500
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 2 cut(s) 123, 161
MaeIII GTNAC 2 cut(s) 170, 233
MalI GATC 4 cut(s) 291, 345, 378, 389
MboI GATC 4 cut(s) 289, 343, 376, 387
MboII GAAGA 5 cut(s) 107, 138, 145, 217, 220
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 2 cut(s) 440, 451
MlyI GAGTC 2 cut(s) 166, 230
MnlI CCTC 5 cut(s) 157, 274, 359, 367, 423
MseI TTAA 4 cut(s) 27, 87, 354, 393
NdeII GATC 4 cut(s) 289, 343, 376, 387
NlaIII CATG 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 170, 233
NspI RCATGY 1 cut(s) 420
PciI ACATGT 1 cut(s) 416
PfeI GAWTC 2 cut(s) 473, 490
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 2 cut(s) 165, 230
PpsI GAGTC 2 cut(s) 165, 230
PscI ACATGT 1 cut(s) 416
PspPI GGNCC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 387
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 4 cut(s) 27, 87, 354, 393
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 4 cut(s) 289, 343, 376, 387
Sau96I GGNCC 1 cut(s) 144
SchI GAGTC 2 cut(s) 166, 230
SduI GDGCHC 1 cut(s) 49
SetI ASST 2 cut(s) 12, 370
Sse9I AATT 2 cut(s) 440, 451
SspMI CTAG 2 cut(s) 123, 161
TasI AATT 2 cut(s) 440, 451
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 2 cut(s) 473, 490
Tru1I TTAA 4 cut(s) 27, 87, 354, 393
Tru9I TTAA 4 cut(s) 27, 87, 354, 393
TseFI GTSAC 2 cut(s) 170, 233
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 2 cut(s) 170, 233
TspDTI ATGAA 3 cut(s) 72, 239, 500
TspGWI ACGGA 1 cut(s) 221
VneI GTGCAC 1 cut(s) 45
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 1 cut(s) 451
XbaI TCTAGA 2 cut(s) 122, 160
XceI RCATGY 1 cut(s) 420
XspI CTAG 2 cut(s) 123, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.