Rmu_sc0001575.1_g000002

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001575.1
Physical Location & Seq
Forward (+)
5439 .. 6185
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001575.1_g000002.1.cds

Sequence Viewer

Length: 747 bp
atgtactcttcttccgtgactccaacagacattcataagtttcgtctccattccattagtgttgaggattttgatcgtatttgtggttggattggcgctgccattaggcgcaatgttgttgaacttgatctttctgttaagtattatggaggtgatgaggatcaccagcagatctttaagttgcctaagagtgttttcacatgtaaaactttgagggttttgaacttgtggtcaaattttattatcaatgctcctgaatcagggtgtttcccgaatctcaagtctctctatgttcattttgatcatcctgtcaataactcaatggagaaactttttgcttgctgccctgtgctggaagatttgagcatacatggaaatcgtggattttatggagatgaggtcgttttgaatttcaccatatctgcacccgaactgaaaacactgaaagtacaatggacgacgcatggtgattatgagaggtgcaacttttatgttgttgccccaaagcttgaaaattttcatctctggcagtatccttcaacagactgttttttggagaatgcaaaagctctagtcagagttactatttctctacaagaccactttgcagatgaagaccatctctttgctatccgtggaactgtacttctggcagtaatttccaatgttagatatttgtctctttcagcacattgtttgaaagtaagtatgcctcgagttcttccaaatataattttttttttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

248

Amino Acids

28.45

Weight (kDa)

6.4

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 3 cut(s) 235, 409, 514
AfaI GTAC 3 cut(s) 5, 450, 645
AfiI CCNNNNNNNGG 2 cut(s) 260, 352
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 6 cut(s) 122, 223, 409, 512, 540, 700
AluBI AGCT 2 cut(s) 508, 569
AluI AGCT 2 cut(s) 508, 569
Alw26I GTCTC 3 cut(s) 50, 288, 684
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 98, 342
ApoI RAATTY 3 cut(s) 235, 409, 514
ArsI GACNNNNNNTTYG 4 cut(s) 266, 298, 608, 640
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 2 cut(s) 98, 111
AsuHPI GGTGA 4 cut(s) 155, 164, 406, 479
AvaI CYCGRG 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 85, 329
BccI CCATC 1 cut(s) 627
BciVI GTATCC 1 cut(s) 543
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 50, 288, 684
BfaI CTAG 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 99
BfuI GTATCC 1 cut(s) 543
BglII AGATCT 1 cut(s) 171
BisI GCNGC 2 cut(s) 99, 343
BlsI GCNGC 2 cut(s) 100, 344
BmeT110I CYCGRG 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 263
BsaBI GATNNNNATC 2 cut(s) 72, 159
BsaJI CCNNGG 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 352
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 2 cut(s) 72, 159
BseDI CCNNGG 1 cut(s) 634
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 2 cut(s) 72, 159
BseLI CCNNNNNNNGG 2 cut(s) 260, 352
BseMI GCAATG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 85, 329
BsgI GTGCAG 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 260, 352
BsmAI GTCTC 3 cut(s) 50, 288, 684
BsmBI CGTCTC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 714
Bsp143I GATC 5 cut(s) 73, 127, 160, 171, 301
BspPI GGATC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 634
BssMI GATC 5 cut(s) 73, 127, 160, 171, 301
Bst4CI ACNGT 2 cut(s) 548, 643
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 634
BstENI CCTNNNNNAGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 2 cut(s) 98, 111
BstKTI GATC 5 cut(s) 76, 130, 163, 174, 304
BstMAI GTCTC 3 cut(s) 50, 288, 684
BstMBI GATC 5 cut(s) 73, 127, 160, 171, 301
BstNSI RCATGY 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 85, 329
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuI GTATCC 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 634
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 2 cut(s) 98, 111
CseI GACGC 1 cut(s) 469
Csp6I GTAC 3 cut(s) 4, 449, 644
CviAII CATG 3 cut(s) 201, 371, 464
CviJI RGCY 2 cut(s) 508, 569
CviKI_1 RGCY 2 cut(s) 508, 569
CviQI GTAC 3 cut(s) 4, 449, 644
DdeI CTNAG 1 cut(s) 186
DpnI GATC 5 cut(s) 75, 129, 162, 173, 303
DpnII GATC 5 cut(s) 73, 127, 160, 171, 301
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 3 cut(s) 204, 374, 467
FatI CATG 3 cut(s) 200, 370, 463
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 99, 343
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 2 cut(s) 99, 343
FspBI CTAG 1 cut(s) 572
GlaI GCGC 2 cut(s) 97, 110
GluI GCNGC 2 cut(s) 99, 343
HaeII RGCGCY 1 cut(s) 99
HgaI GACGC 1 cut(s) 469
HhaI GCGC 2 cut(s) 98, 111
Hin1II CATG 3 cut(s) 204, 374, 467
Hin6I GCGC 2 cut(s) 96, 109
HinP1I GCGC 2 cut(s) 96, 109
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 3 cut(s) 19, 257, 274
HphI GGTGA 4 cut(s) 155, 164, 406, 479
Hpy188I TCNGA 1 cut(s) 578
Hpy188III TCNNGA 2 cut(s) 254, 271
Hpy99I CGWCG 1 cut(s) 463
HpyAV CCTTC 1 cut(s) 546
HpyCH4III ACNGT 2 cut(s) 548, 643
HpyCH4V TGCA 4 cut(s) 425, 483, 563, 608
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 3 cut(s) 204, 374, 467
HspAI GCGC 2 cut(s) 96, 109
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 73, 127, 160, 171, 301
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 8 cut(s) 179, 246, 267, 321, 338, 360, 511, 635
Lsp1109I GCAGC 2 cut(s) 85, 329
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 2 cut(s) 16, 580
MalI GATC 5 cut(s) 75, 129, 162, 173, 303
MboI GATC 5 cut(s) 73, 127, 160, 171, 301
MboII GAAGA 4 cut(s) 3, 368, 626, 713
MflI RGATCY 1 cut(s) 171
MluCI AATT 5 cut(s) 235, 409, 514, 657, 732
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 47, 68
MnlI CCTC 7 cut(s) 58, 143, 151, 207, 391, 471, 723
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 2 cut(s) 138, 177
Mva1269I GAATGC 1 cut(s) 565
NdeII GATC 5 cut(s) 73, 127, 160, 171, 301
NlaIII CATG 3 cut(s) 204, 374, 467
NmuCI GTSAC 1 cut(s) 16
NspI RCATGY 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 714
PciI ACATGT 1 cut(s) 200
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 257, 274
PkrI GCNGC 2 cut(s) 100, 344
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 200
PspXI VCTCGAGB 1 cut(s) 714
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 3 cut(s) 5, 450, 645
RsaNI GTAC 3 cut(s) 4, 449, 644
SaqAI TTAA 2 cut(s) 138, 177
SatI GCNGC 2 cut(s) 99, 343
Sau3AI GATC 5 cut(s) 73, 127, 160, 171, 301
SchI GAGTC 1 cut(s) 13
SetI ASST 5 cut(s) 154, 402, 482, 510, 571
Sfr274I CTCGAG 1 cut(s) 714
SlaI CTCGAG 1 cut(s) 714
SmlI CTYRAG 2 cut(s) 278, 714
SmoI CTYRAG 2 cut(s) 278, 714
Sse9I AATT 5 cut(s) 235, 409, 514, 657, 732
SspMI CTAG 1 cut(s) 572
TaaI ACNGT 2 cut(s) 548, 643
TaqI TCGA 1 cut(s) 715
TasI AATT 5 cut(s) 235, 409, 514, 657, 732
TatI WGTACW 3 cut(s) 3, 448, 643
TfiI GAWTC 2 cut(s) 257, 274
Tru1I TTAA 2 cut(s) 138, 177
Tru9I TTAA 2 cut(s) 138, 177
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 98, 342
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 4 cut(s) 23, 284, 509, 627
TspGWI ACGGA 2 cut(s) 4, 623
TspRI CASTG 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 258
XapI RAATTY 3 cut(s) 235, 409, 514
XceI RCATGY 1 cut(s) 204
XhoI CTCGAG 1 cut(s) 714
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.