DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1132 |
| AccIII | TCCGGA | 1 cut(s) | 592 |
| AciI | CCGC | 2 cut(s) | 587, 773 |
| AclWI | GGATC | 1 cut(s) | 809 |
| AcsI | RAATTY | 2 cut(s) | 200, 424 |
| AcuI | CTGAAG | 1 cut(s) | 1106 |
| AfaI | GTAC | 2 cut(s) | 103, 1186 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 123 |
| AgsI | TTSAA | 5 cut(s) | 244, 250, 259, 689, 1129 |
| AluBI | AGCT | 3 cut(s) | 213, 255, 642 |
| AluI | AGCT | 3 cut(s) | 213, 255, 642 |
| Alw21I | GWGCWC | 1 cut(s) | 285 |
| Alw26I | GTCTC | 2 cut(s) | 22, 533 |
| AlwI | GGATC | 1 cut(s) | 809 |
| Aor13HI | TCCGGA | 1 cut(s) | 592 |
| ApeKI | GCWGC | 1 cut(s) | 1014 |
| ApoI | RAATTY | 2 cut(s) | 200, 424 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 96, 254 |
| AspS9I | GGNCC | 2 cut(s) | 764, 926 |
| AsuHPI | GGTGA | 3 cut(s) | 194, 536, 1074 |
| AvaII | GGWCC | 2 cut(s) | 764, 926 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 827, 860 |
| BanI | GGYRCC | 1 cut(s) | 1132 |
| Bbv12I | GWGCWC | 1 cut(s) | 285 |
| BbvI | GCAGC | 1 cut(s) | 1001 |
| BccI | CCATC | 5 cut(s) | 515, 887, 911, 1057, 1144 |
| BclI | TGATCA | 1 cut(s) | 451 |
| BcoDI | GTCTC | 2 cut(s) | 22, 533 |
| BfaI | CTAG | 5 cut(s) | 6, 105, 483, 896, 1025 |
| BisI | GCNGC | 1 cut(s) | 1015 |
| BlsI | GCNGC | 1 cut(s) | 1016 |
| Bme18I | GGWCC | 2 cut(s) | 764, 926 |
| BmgT120I | GGNCC | 2 cut(s) | 764, 926 |
| BmiI | GGNNCC | 2 cut(s) | 927, 1134 |
| BmsI | GCATC | 5 cut(s) | 75, 262, 378, 598, 952 |
| BoxI | GACNNNNGTC | 1 cut(s) | 652 |
| BpmI | CTGGAG | 2 cut(s) | 557, 656 |
| BpuEI | CTTGAG | 3 cut(s) | 587, 671, 728 |
| Bsa29I | ATCGAT | 1 cut(s) | 693 |
| BsaAI | YACGTR | 1 cut(s) | 839 |
| BsaBI | GATNNNNATC | 2 cut(s) | 466, 813 |
| BsaJI | CCNNGG | 2 cut(s) | 87, 918 |
| BsaWI | WCCGGW | 2 cut(s) | 559, 592 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 123 |
| Bse1I | ACTGG | 2 cut(s) | 639, 1085 |
| Bse3DI | GCAATG | 1 cut(s) | 929 |
| Bse8I | GATNNNNATC | 2 cut(s) | 466, 813 |
| BseAI | TCCGGA | 1 cut(s) | 592 |
| BseCI | ATCGAT | 1 cut(s) | 693 |
| BseDI | CCNNGG | 2 cut(s) | 87, 918 |
| BseGI | GGATG | 8 cut(s) | 66, 370, 393, 454, 589, 814, 903, 967 |
| BseJI | GATNNNNATC | 2 cut(s) | 466, 813 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 123 |
| BseMI | GCAATG | 1 cut(s) | 929 |
| BseMII | CTCAG | 1 cut(s) | 33 |
| BseNI | ACTGG | 2 cut(s) | 639, 1085 |
| BseRI | GAGGAG | 3 cut(s) | 319, 584, 1082 |
| BseXI | GCAGC | 1 cut(s) | 1001 |
| BshNI | GGYRCC | 1 cut(s) | 1132 |
| BshVI | ATCGAT | 1 cut(s) | 693 |
| BsiHKAI | GWGCWC | 1 cut(s) | 285 |
| BsiSI | CCGG | 2 cut(s) | 560, 593 |
| BslFI | GGGAC | 2 cut(s) | 100, 939 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 123 |
| BsmAI | GTCTC | 2 cut(s) | 22, 533 |
| BsmFI | GGGAC | 2 cut(s) | 100, 939 |
| Bsp1286I | GDGCHC | 1 cut(s) | 285 |
| Bsp13I | TCCGGA | 1 cut(s) | 592 |
| Bsp1407I | TGTACA | 1 cut(s) | 1184 |
| Bsp143I | GATC | 4 cut(s) | 340, 451, 461, 814 |
| BspACI | CCGC | 2 cut(s) | 587, 773 |
| BspCNI | CTCAG | 1 cut(s) | 32 |
| BspDI | ATCGAT | 1 cut(s) | 693 |
| BspEI | TCCGGA | 1 cut(s) | 592 |
| BspLI | GGNNCC | 2 cut(s) | 927, 1134 |
| BspPI | GGATC | 1 cut(s) | 809 |
| BspQI | GCTCTTC | 1 cut(s) | 245 |
| BspT107I | GGYRCC | 1 cut(s) | 1132 |
| BsrDI | GCAATG | 1 cut(s) | 929 |
| BsrGI | TGTACA | 1 cut(s) | 1184 |
| BsrI | ACTGG | 2 cut(s) | 639, 1085 |
| BssECI | CCNNGG | 2 cut(s) | 87, 918 |
| BssMI | GATC | 4 cut(s) | 340, 451, 461, 814 |
| BssT1I | CCWWGG | 2 cut(s) | 87, 918 |
| Bst4CI | ACNGT | 5 cut(s) | 48, 440, 580, 784, 1052 |
| Bst6I | CTCTTC | 2 cut(s) | 225, 245 |
| BstAUI | TGTACA | 1 cut(s) | 1184 |
| BstBAI | YACGTR | 1 cut(s) | 839 |
| BstDEI | CTNAG | 4 cut(s) | 19, 657, 831, 1007 |
| BstEII | GGTNACC | 1 cut(s) | 778 |
| BstF5I | GGATG | 8 cut(s) | 66, 370, 393, 454, 589, 814, 903, 967 |
| BstKTI | GATC | 4 cut(s) | 343, 454, 464, 817 |
| BstMAI | GTCTC | 2 cut(s) | 22, 533 |
| BstMBI | GATC | 4 cut(s) | 340, 451, 461, 814 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 397 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 652 |
| BstPI | GGTNACC | 1 cut(s) | 778 |
| BstSNI | TACGTA | 1 cut(s) | 839 |
| BstV1I | GCAGC | 1 cut(s) | 1001 |
| Bsu15I | ATCGAT | 1 cut(s) | 693 |
| BsuTUI | ATCGAT | 1 cut(s) | 693 |
| BtsCI | GGATG | 8 cut(s) | 66, 370, 393, 454, 589, 814, 903, 967 |
| BtsIMutI | CAGTG | 2 cut(s) | 632, 1092 |
| Cfr13I | GGNCC | 2 cut(s) | 764, 926 |
| ClaI | ATCGAT | 1 cut(s) | 693 |
| Csp6I | GTAC | 2 cut(s) | 102, 1185 |
| CviAII | CATG | 5 cut(s) | 193, 290, 408, 908, 1018 |
| CviQI | GTAC | 2 cut(s) | 102, 1185 |
| DdeI | CTNAG | 4 cut(s) | 19, 657, 831, 1007 |
| DpnI | GATC | 4 cut(s) | 342, 453, 463, 816 |
| DpnII | GATC | 4 cut(s) | 340, 451, 461, 814 |
| DraI | TTTAAA | 1 cut(s) | 178 |
| Eam1104I | CTCTTC | 2 cut(s) | 225, 245 |
| EarI | CTCTTC | 2 cut(s) | 225, 245 |
| Eco105I | TACGTA | 1 cut(s) | 839 |
| Eco130I | CCWWGG | 2 cut(s) | 87, 918 |
| Eco32I | GATATC | 1 cut(s) | 828 |
| Eco47I | GGWCC | 2 cut(s) | 764, 926 |
| Eco57I | CTGAAG | 1 cut(s) | 1106 |
| Eco91I | GGTNACC | 1 cut(s) | 778 |
| EcoO65I | GGTNACC | 1 cut(s) | 778 |
| EcoRI | GAATTC | 1 cut(s) | 200 |
| EcoRV | GATATC | 1 cut(s) | 828 |
| EcoT14I | CCWWGG | 2 cut(s) | 87, 918 |
| ErhI | CCWWGG | 2 cut(s) | 87, 918 |
| FaeI | CATG | 5 cut(s) | 196, 293, 411, 911, 1021 |
| FaqI | GGGAC | 2 cut(s) | 100, 939 |
| FatI | CATG | 5 cut(s) | 192, 289, 407, 907, 1017 |
| FauNDI | CATATG | 1 cut(s) | 614 |
| FbaI | TGATCA | 1 cut(s) | 451 |
| Fnu4HI | GCNGC | 1 cut(s) | 1015 |
| FokI | GGATG | 8 cut(s) | 53, 377, 400, 441, 576, 821, 890, 974 |
| Fsp4HI | GCNGC | 1 cut(s) | 1015 |
| FspBI | CTAG | 5 cut(s) | 6, 105, 483, 896, 1025 |
| GluI | GCNGC | 1 cut(s) | 1015 |
| GsuI | CTGGAG | 2 cut(s) | 557, 656 |
| HapII | CCGG | 2 cut(s) | 560, 593 |
| Hin1II | CATG | 5 cut(s) | 196, 293, 411, 911, 1021 |
| HincII | GTYRAC | 1 cut(s) | 576 |
| HindII | GTYRAC | 1 cut(s) | 576 |
| HpaI | GTTAAC | 1 cut(s) | 576 |
| HpaII | CCGG | 2 cut(s) | 560, 593 |
| HphI | GGTGA | 3 cut(s) | 194, 536, 1074 |
| Hpy166II | GTNNAC | 4 cut(s) | 185, 576, 1185, 1187 |
| Hpy188I | TCNGA | 2 cut(s) | 345, 354 |
| Hpy188III | TCNNGA | 9 cut(s) | 227, 536, 566, 593, 869, 896, 1025, 1058, 1112 |
| Hpy8I | GTNNAC | 4 cut(s) | 185, 576, 1185, 1187 |
| Hpy99I | CGWCG | 1 cut(s) | 854 |
| HpyAV | CCTTC | 1 cut(s) | 1123 |
| HpyCH4III | ACNGT | 5 cut(s) | 48, 440, 580, 784, 1052 |
| HpyCH4IV | ACGT | 1 cut(s) | 838 |
| HpyCH4V | TGCA | 2 cut(s) | 289, 1017 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 397 |
| HpyF3I | CTNAG | 4 cut(s) | 19, 657, 831, 1007 |
| HpySE526I | ACGT | 1 cut(s) | 838 |
| Hsp92II | CATG | 5 cut(s) | 196, 293, 411, 911, 1021 |
| Kpn2I | TCCGGA | 1 cut(s) | 592 |
| Ksp22I | TGATCA | 1 cut(s) | 451 |
| KspAI | GTTAAC | 1 cut(s) | 576 |
| Kzo9I | GATC | 4 cut(s) | 340, 451, 461, 814 |
| LguI | GCTCTTC | 1 cut(s) | 245 |
| Lsp1109I | GCAGC | 1 cut(s) | 1001 |
| LweI | GCATC | 5 cut(s) | 75, 262, 378, 598, 952 |
| MaeI | CTAG | 5 cut(s) | 6, 105, 483, 896, 1025 |
| MaeII | ACGT | 1 cut(s) | 838 |
| MaeIII | GTNAC | 2 cut(s) | 671, 778 |
| MalI | GATC | 4 cut(s) | 342, 453, 463, 816 |
| MboI | GATC | 4 cut(s) | 340, 451, 461, 814 |
| MboII | GAAGA | 6 cut(s) | 242, 262, 502, 972, 1112, 1189 |
| MhlI | GDGCHC | 1 cut(s) | 285 |
| MluCI | AATT | 3 cut(s) | 200, 424, 759 |
| MlyI | GAGTC | 3 cut(s) | 535, 662, 908 |
| MmeI | TCCRAC | 1 cut(s) | 104 |
| MroI | TCCGGA | 1 cut(s) | 592 |
| MroXI | GAANNNNTTC | 2 cut(s) | 96, 254 |
| MseI | TTAA | 6 cut(s) | 35, 177, 575, 747, 1074, 1208 |
| MslI | CAYNNNNRTG | 1 cut(s) | 288 |
| MspI | CCGG | 2 cut(s) | 560, 593 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 397 |
| NdeI | CATATG | 1 cut(s) | 614 |
| NdeII | GATC | 4 cut(s) | 340, 451, 461, 814 |
| NlaIII | CATG | 5 cut(s) | 196, 293, 411, 911, 1021 |
| NlaIV | GGNNCC | 2 cut(s) | 927, 1134 |
| NmuCI | GTSAC | 1 cut(s) | 671 |
| PciSI | GCTCTTC | 1 cut(s) | 245 |
| PdmI | GAANNNNTTC | 2 cut(s) | 96, 254 |
| PfeI | GAWTC | 8 cut(s) | 92, 430, 527, 583, 695, 977, 1021, 1028 |
| PkrI | GCNGC | 1 cut(s) | 1016 |
| PleI | GAGTC | 3 cut(s) | 535, 661, 907 |
| PpsI | GAGTC | 3 cut(s) | 535, 661, 907 |
| Ppu21I | YACGTR | 1 cut(s) | 839 |
| PshAI | GACNNNNGTC | 1 cut(s) | 652 |
| PspEI | GGTNACC | 1 cut(s) | 778 |
| PspN4I | GGNNCC | 2 cut(s) | 927, 1134 |
| PspPI | GGNCC | 2 cut(s) | 764, 926 |
| RsaI | GTAC | 2 cut(s) | 103, 1186 |
| RsaNI | GTAC | 2 cut(s) | 102, 1185 |
| RseI | CAYNNNNRTG | 1 cut(s) | 288 |
| SapI | GCTCTTC | 1 cut(s) | 245 |
| SaqAI | TTAA | 6 cut(s) | 35, 177, 575, 747, 1074, 1208 |
| SatI | GCNGC | 1 cut(s) | 1015 |
| Sau3AI | GATC | 4 cut(s) | 340, 451, 461, 814 |
| Sau96I | GGNCC | 2 cut(s) | 764, 926 |
| SchI | GAGTC | 3 cut(s) | 535, 662, 908 |
| SduI | GDGCHC | 1 cut(s) | 285 |
| SfaNI | GCATC | 5 cut(s) | 75, 262, 378, 598, 952 |
| SinI | GGWCC | 2 cut(s) | 764, 926 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 288 |
| SmlI | CTYRAG | 3 cut(s) | 566, 650, 707 |
| SmoI | CTYRAG | 3 cut(s) | 566, 650, 707 |
| SnaBI | TACGTA | 1 cut(s) | 839 |
| Sse9I | AATT | 3 cut(s) | 200, 424, 759 |
| SsiI | CCGC | 2 cut(s) | 587, 773 |
| SspI | AATATT | 1 cut(s) | 349 |
| SspMI | CTAG | 5 cut(s) | 6, 105, 483, 896, 1025 |
| StyI | CCWWGG | 2 cut(s) | 87, 918 |
| TaaI | ACNGT | 5 cut(s) | 48, 440, 580, 784, 1052 |
| TaiI | ACGT | 1 cut(s) | 841 |
| TaqI | TCGA | 5 cut(s) | 693, 889, 975, 1113, 1139 |
| TasI | AATT | 3 cut(s) | 200, 424, 759 |
| TatI | WGTACW | 1 cut(s) | 1184 |
| TfiI | GAWTC | 8 cut(s) | 92, 430, 527, 583, 695, 977, 1021, 1028 |
| Tru1I | TTAA | 6 cut(s) | 35, 177, 575, 747, 1074, 1208 |
| Tru9I | TTAA | 6 cut(s) | 35, 177, 575, 747, 1074, 1208 |
| TscAI | CASTG | 2 cut(s) | 639, 1092 |
| TseFI | GTSAC | 1 cut(s) | 671 |
| TseI | GCWGC | 1 cut(s) | 1014 |
| Tsp45I | GTSAC | 1 cut(s) | 671 |
| TspDTI | ATGAA | 4 cut(s) | 193, 396, 1034, 1169 |
| TspRI | CASTG | 2 cut(s) | 639, 1092 |
| VpaK11BI | GGWCC | 2 cut(s) | 764, 926 |
| XapI | RAATTY | 2 cut(s) | 200, 424 |
| XbaI | TCTAGA | 2 cut(s) | 895, 1024 |
| XmnI | GAANNNNTTC | 2 cut(s) | 96, 254 |
| XspI | CTAG | 5 cut(s) | 6, 105, 483, 896, 1025 |