Rroxscaffold_1G00051240

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000062
Physical Location & Seq
Reverse (-)
71901503 .. 71906251
4749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051240.1

Sequence Viewer

Length: 1377 bp
ATGTCAGAGGTTCAAGCAAAAAGAGTTAATAAAGATAGAATCAGTGCATTACCAGATGCAGTCCTTTATCACATCCTTTCGTTCCTTAAAACCGAAGATATTGTGATGACCATCTTTTTGTCTAGAAGATGGAAGAACATTTGGGCCTCTGTTCCGACTCTAGACTTCTGCGACCAAGAGAACCCTGACTCTATTCCTTTTTCGAGGTTTATTGATAATGTACTCTTCTTCCGTGACTCAACAGACATTCATAAGTTTCGTCTCCATTCCATTAGTGTTGAGGATTTTGAGCGTATTTGTGGTTGGATTGGCGCCGCCATTAGGCGCAATGTTGTTGAACTTGATCTTTCTGTTAAGTATTATGGAGGTGATGAGGATCACCAGCAGATCTTTAAGTTGCCTAAGAGTGTTTTCACATGTAAAACTTTGAGGGTTTTGAACTTGTGGTCAAATTGTATTATCAATGCTCCTGCATCAGGGTGTTTCCTGAATCTCAAGTCTCTTTATGTTCATTTTGATCATCCTGTCAATAACTCAATGGAGAAGATTTTTTCTTGCTGCCCTGTGCTGGAAGATTTGAGCATACATGGAACTCATGGGTTTTATGGAGATGACGTCGTTTTGAATTTCACCATATCTGCACCTGAACTGAAGACACTGAAAGTACAATGGACGACGCATGGTGATCATGAGAGGTGCAACTTTTATGTTGTTGCCCCAAAGCTTGAAAATTTTCATCTCTGGCAGTATCCTTCAACAGACTGTTTTTTGGAGAATGCAAAATCTCTAGTCAGAGTTACTATTTCTCTACAAGACCACTTTGCAGATGAAGACCGTCTCTTTGCTATCCGTGGAACTGCACTTCTGGCAGTAATTTCCAATGTTAGATACTTGTCTCTTTCAGCACATTGTTTGAAAGGGTGTTGTCTTCCTGTCTTTGATAAGTTGAGCCGATTGGAGCTTGCTCTCTACAATTGCTATTACTGGGAACTGCTAAAAGAGCTTCTCAGGAGATCACCTAAACTGGAATATCTTGTCTTAGAGCTGAAAGACTTCATATGCTCCACGGCACCTTCGAGTCATCAATGGAGTCCACCAGAGTCGATACCTATCTGTTTGTTGACGCAGCTCAAGACTGTCTCTATAAGGGGATTCAAGGGAAAACTGGATGAGATGGATGTGGCAAAGTATTTGTTAAACAACGGTGAAGTTTTGAAGAGGATGACTTTTTATAGTGAGGATCTTTTGCGTACCAAAGAGGAGTTAAAAATGGAGTTGTCAATGTGTCAATGGGGTTCAAAGACTTGCCAAGTTGAATTTTGCCCGGACCAAAAAGACGAAGGCTTGTCATTTTTAGGTATGCGTTCTTGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

458

Amino Acids

52.91

Weight (kDa)

6.29

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 52 6.6e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 83 - 412 3e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 101 - 251 4.6e-12 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 366 - 410 3e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 618
AccB1I GGYRCC 2 cut(s) 311, 1069
AciI CCGC 1 cut(s) 315
AclWI GGATC 2 cut(s) 384, 1248
AcsI RAATTY 3 cut(s) 625, 730, 1316
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 2 cut(s) 312, 615
AfaI GTAC 3 cut(s) 222, 666, 1252
AfiI CCNNNNNNNGG 3 cut(s) 321, 476, 568
AflIII ACRYGT 1 cut(s) 416
AluBI AGCT 5 cut(s) 724, 961, 1003, 1045, 1129
AluI AGCT 5 cut(s) 724, 961, 1003, 1045, 1129
Alw26I GTCTC 5 cut(s) 266, 504, 842, 900, 1144
AlwI GGATC 2 cut(s) 384, 1248
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 558, 1126
ApoI RAATTY 3 cut(s) 625, 730, 1316
ArsI GACNNNNNNTTYG 4 cut(s) 100, 132, 824, 856
Asp700I GAANNNNTTC 2 cut(s) 732, 1052
AspLEI GCGC 2 cut(s) 314, 327
AspS9I GGNCC 2 cut(s) 144, 1327
AsuC2I CCSGG 1 cut(s) 1325
AsuHPI GGTGA 6 cut(s) 371, 380, 622, 695, 1008, 1217
AvaII GGWCC 1 cut(s) 1327
BanI GGYRCC 2 cut(s) 311, 1069
BbsI GAAGAC 3 cut(s) 659, 837, 920
BbvI GCAGC 2 cut(s) 545, 1138
BccI CCATC 3 cut(s) 119, 123, 1168
BceAI ACGGC 1 cut(s) 1083
BciVI GTATCC 1 cut(s) 759
BclI TGATCA 2 cut(s) 517, 685
BcnI CCSGG 1 cut(s) 1325
BcoDI GTCTC 5 cut(s) 266, 504, 842, 900, 1144
BfaI CTAG 3 cut(s) 123, 161, 788
BfoI RGCGCY 1 cut(s) 315
BfuI GTATCC 1 cut(s) 759
BglII AGATCT 1 cut(s) 387
BisI GCNGC 3 cut(s) 315, 559, 1127
BlsI GCNGC 3 cut(s) 316, 560, 1128
Bme1390I CCNGG 1 cut(s) 1325
Bme18I GGWCC 1 cut(s) 1327
BmgT120I GGNCC 2 cut(s) 144, 1327
BmiI GGNNCC 2 cut(s) 313, 1071
BmrFI CCNGG 1 cut(s) 1325
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 2 cut(s) 46, 482
BmuI ACTGGG 1 cut(s) 994
BpiI GAAGAC 3 cut(s) 659, 837, 920
BpuEI CTTGAG 2 cut(s) 479, 1115
BpuMI CCSGG 1 cut(s) 1325
BsaBI GATNNNNATC 3 cut(s) 110, 375, 1109
BsaHI GRCGYC 2 cut(s) 312, 615
BsaJI CCNNGG 2 cut(s) 850, 1065
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 321, 476, 568
Bse1I ACTGG 3 cut(s) 989, 1029, 1170
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 3 cut(s) 110, 375, 1109
BseDI CCNNGG 2 cut(s) 850, 1065
BseGI GGATG 5 cut(s) 72, 520, 1174, 1183, 1227
BseJI GATNNNNATC 3 cut(s) 110, 375, 1109
BseLI CCNNNNNNNGG 3 cut(s) 321, 476, 568
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 1021
BseNI ACTGG 3 cut(s) 989, 1029, 1170
BseRI GAGGAG 1 cut(s) 1274
BseXI GCAGC 2 cut(s) 545, 1138
BsgI GTGCAG 2 cut(s) 624, 843
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 2 cut(s) 311, 1069
BsiSI CCGG 1 cut(s) 1325
BslI CCNNNNNNNGG 3 cut(s) 321, 476, 568
BsmAI GTCTC 5 cut(s) 266, 504, 842, 900, 1144
BsmBI CGTCTC 2 cut(s) 266, 842
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 1020
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 2 cut(s) 313, 1071
BspPI GGATC 2 cut(s) 384, 1248
BspT107I GGYRCC 2 cut(s) 311, 1069
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 3 cut(s) 989, 1029, 1170
BssECI CCNNGG 2 cut(s) 850, 1065
BssMI GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
BssNI GRCGYC 2 cut(s) 312, 615
Bst4CI ACNGT 4 cut(s) 764, 836, 1138, 1205
Bst6I CTCTTC 2 cut(s) 230, 1211
BstACI GRCGYC 2 cut(s) 312, 615
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 3 cut(s) 402, 1007, 1039
BstDSI CCRYGG 2 cut(s) 850, 1065
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 5 cut(s) 72, 520, 1174, 1183, 1227
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 2 cut(s) 314, 327
BstKTI GATC 7 cut(s) 346, 379, 390, 520, 688, 1016, 1243
BstMAI GTCTC 5 cut(s) 266, 504, 842, 900, 1144
BstMBI GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
BstMWI GCNNNNNNNGC 2 cut(s) 866, 1000
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 1323
BstV1I GCAGC 2 cut(s) 545, 1138
BstV2I GAAGAC 3 cut(s) 659, 837, 920
BstX2I RGATCY 2 cut(s) 387, 1240
BstYI RGATCY 2 cut(s) 387, 1240
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 2 cut(s) 850, 1065
BtsCI GGATG 5 cut(s) 72, 520, 1174, 1183, 1227
BtsIMutI CAGTG 2 cut(s) 49, 656
Cac8I GCNNGC 1 cut(s) 963
CciI TCATGA 1 cut(s) 688
CfoI GCGC 2 cut(s) 314, 327
Cfr13I GGNCC 2 cut(s) 144, 1327
CseI GACGC 2 cut(s) 685, 1132
Csp6I GTAC 3 cut(s) 221, 665, 1251
CviAII CATG 5 cut(s) 417, 587, 596, 680, 689
CviJI RGCY 8 cut(s) 146, 724, 951, 961, 1003, 1045, 1129, 1344
CviKI_1 RGCY 8 cut(s) 146, 724, 951, 961, 1003, 1045, 1129, 1344
CviQI GTAC 3 cut(s) 221, 665, 1251
DdeI CTNAG 3 cut(s) 402, 1007, 1039
DinI GGCGCC 1 cut(s) 313
DpnI GATC 7 cut(s) 345, 378, 389, 519, 687, 1015, 1242
DpnII GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
Eam1104I CTCTTC 2 cut(s) 230, 1211
EarI CTCTTC 2 cut(s) 230, 1211
Eco47I GGWCC 1 cut(s) 1327
Eco57I CTGAAG 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 474
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
Esp3I CGTCTC 2 cut(s) 266, 842
FaeI CATG 5 cut(s) 420, 590, 599, 683, 692
FatI CATG 5 cut(s) 416, 586, 595, 679, 688
FauNDI CATATG 1 cut(s) 1058
FbaI TGATCA 2 cut(s) 517, 685
Fnu4HI GCNGC 3 cut(s) 315, 559, 1127
FokI GGATG 5 cut(s) 59, 507, 1181, 1190, 1234
Fsp4HI GCNGC 3 cut(s) 315, 559, 1127
FspBI CTAG 3 cut(s) 123, 161, 788
GlaI GCGC 2 cut(s) 313, 326
GluI GCNGC 3 cut(s) 315, 559, 1127
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 1325
HgaI GACGC 2 cut(s) 685, 1132
HhaI GCGC 2 cut(s) 314, 327
Hin1I GRCGYC 2 cut(s) 312, 615
Hin1II CATG 5 cut(s) 420, 590, 599, 683, 692
Hin6I GCGC 2 cut(s) 312, 325
HinP1I GCGC 2 cut(s) 312, 325
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 9 cut(s) 39, 157, 188, 236, 490, 1078, 1090, 1100, 1152
HpaII CCGG 1 cut(s) 1325
HphI GGTGA 6 cut(s) 371, 380, 622, 695, 1008, 1217
Hpy166II GTNNAC 2 cut(s) 1094, 1122
Hpy188I TCNGA 3 cut(s) 7, 156, 794
Hpy188III TCNNGA 6 cut(s) 123, 161, 487, 689, 1009, 1132
Hpy8I GTNNAC 2 cut(s) 1094, 1122
Hpy99I CGWCG 2 cut(s) 620, 679
HpyAV CCTTC 3 cut(s) 762, 1083, 1334
HpyCH4III ACNGT 4 cut(s) 764, 836, 1138, 1205
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 8 cut(s) 47, 59, 473, 641, 699, 779, 824, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 866, 1000
HpyF3I CTNAG 3 cut(s) 402, 1007, 1039
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 2 cut(s) 312, 615
Hsp92II CATG 5 cut(s) 420, 590, 599, 683, 692
HspAI GCGC 2 cut(s) 312, 325
KasI GGCGCC 1 cut(s) 311
Ksp22I TGATCA 2 cut(s) 517, 685
Kzo9I GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
LmnI GCTCC 3 cut(s) 472, 958, 1067
Lsp1109I GCAGC 2 cut(s) 545, 1138
LweI GCATC 2 cut(s) 46, 482
MaeI CTAG 3 cut(s) 123, 161, 788
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 2 cut(s) 233, 796
MalI GATC 7 cut(s) 345, 378, 389, 519, 687, 1015, 1242
MboI GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
MfeI CAATTG 1 cut(s) 973
MflI RGATCY 2 cut(s) 387, 1240
MluCI AATT 6 cut(s) 451, 625, 730, 873, 973, 1316
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 6 cut(s) 151, 182, 230, 1087, 1099, 1109
MmeI TCCRAC 2 cut(s) 179, 284
MroXI GAANNNNTTC 2 cut(s) 732, 1052
MseI TTAA 6 cut(s) 27, 87, 354, 393, 1196, 1265
MslI CAYNNNNRTG 1 cut(s) 478
MspI CCGG 1 cut(s) 1325
MspR9I CCNGG 1 cut(s) 1325
MunI CAATTG 1 cut(s) 973
Mva1269I GAATGC 1 cut(s) 781
MwoI GCNNNNNNNGC 2 cut(s) 866, 1000
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 1 cut(s) 1325
NdeI CATATG 1 cut(s) 1058
NdeII GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
NlaIII CATG 5 cut(s) 420, 590, 599, 683, 692
NlaIV GGNNCC 2 cut(s) 313, 1071
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 420
PagI TCATGA 1 cut(s) 688
PciI ACATGT 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 1073
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 2 cut(s) 732, 1052
PfeI GAWTC 3 cut(s) 39, 490, 1152
PkrI GCNGC 3 cut(s) 316, 560, 1128
PleI GAGTC 6 cut(s) 151, 182, 230, 1086, 1098, 1108
PluTI GGCGCC 1 cut(s) 315
PpsI GAGTC 6 cut(s) 151, 182, 230, 1086, 1098, 1108
PscI ACATGT 1 cut(s) 416
PspN4I GGNNCC 2 cut(s) 313, 1071
PspPI GGNCC 2 cut(s) 144, 1327
PsuI RGATCY 2 cut(s) 387, 1240
RsaI GTAC 3 cut(s) 222, 666, 1252
RsaNI GTAC 3 cut(s) 221, 665, 1251
RseI CAYNNNNRTG 1 cut(s) 478
SaqAI TTAA 6 cut(s) 27, 87, 354, 393, 1196, 1265
SatI GCNGC 3 cut(s) 315, 559, 1127
Sau3AI GATC 7 cut(s) 343, 376, 387, 517, 685, 1013, 1240
Sau96I GGNCC 2 cut(s) 144, 1327
SchI GAGTC 6 cut(s) 151, 182, 230, 1087, 1099, 1109
ScrFI CCNGG 1 cut(s) 1325
SfaNI GCATC 2 cut(s) 46, 482
SfoI GGCGCC 1 cut(s) 313
SinI GGWCC 1 cut(s) 1327
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 494, 1130
SmoI CTYRAG 2 cut(s) 494, 1130
Sse9I AATT 6 cut(s) 451, 625, 730, 873, 973, 1316
SsiI CCGC 1 cut(s) 315
SspDI GGCGCC 1 cut(s) 311
SspMI CTAG 3 cut(s) 123, 161, 788
StyD4I CCNGG 1 cut(s) 1323
TaaI ACNGT 4 cut(s) 764, 836, 1138, 1205
TaiI ACGT 1 cut(s) 618
TaqI TCGA 3 cut(s) 203, 1076, 1103
TasI AATT 6 cut(s) 451, 625, 730, 873, 973, 1316
TatI WGTACW 2 cut(s) 220, 664
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 3 cut(s) 39, 490, 1152
Tru1I TTAA 6 cut(s) 27, 87, 354, 393, 1196, 1265
Tru9I TTAA 6 cut(s) 27, 87, 354, 393, 1196, 1265
TscAI CASTG 2 cut(s) 49, 663
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 558, 1126
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 239, 500, 725, 843, 1045
TspGWI ACGGA 2 cut(s) 221, 839
TspRI CASTG 2 cut(s) 49, 663
VpaK11BI GGWCC 1 cut(s) 1327
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 3 cut(s) 625, 730, 1316
XbaI TCTAGA 2 cut(s) 122, 160
XceI RCATGY 1 cut(s) 420
XmnI GAANNNNTTC 2 cut(s) 732, 1052
XspI CTAG 3 cut(s) 123, 161, 788
ZraI GACGTC 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.