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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1201 |
| AciI | CCGC | 1 cut(s) | 47 |
| AclWI | GGATC | 3 cut(s) | 77, 80, 93 |
| AcuI | CTGAAG | 1 cut(s) | 1010 |
| AfaI | GTAC | 2 cut(s) | 279, 458 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 353, 518 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AluBI | AGCT | 7 cut(s) | 501, 581, 757, 890, 938, 988, 1036 |
| AluI | AGCT | 7 cut(s) | 501, 581, 757, 890, 938, 988, 1036 |
| Alw21I | GWGCWC | 1 cut(s) | 751 |
| Alw26I | GTCTC | 2 cut(s) | 228, 539 |
| AlwI | GGATC | 3 cut(s) | 77, 80, 93 |
| AoxI | GGCC | 1 cut(s) | 1175 |
| ApeKI | GCWGC | 2 cut(s) | 600, 1036 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1270, 1302 |
| AspS9I | GGNCC | 3 cut(s) | 138, 641, 1175 |
| AsuC2I | CCSGG | 1 cut(s) | 1333 |
| AsuHPI | GGTGA | 4 cut(s) | 409, 493, 839, 1330 |
| AvaII | GGWCC | 2 cut(s) | 138, 641 |
| BamHI | GGATCC | 1 cut(s) | 85 |
| BanI | GGYRCC | 1 cut(s) | 1201 |
| BauI | CACGAG | 1 cut(s) | 645 |
| BbsI | GAAGAC | 1 cut(s) | 1202 |
| Bbv12I | GWGCWC | 1 cut(s) | 751 |
| BbvI | GCAGC | 2 cut(s) | 587, 1023 |
| BccI | CCATC | 3 cut(s) | 153, 1237, 1264 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1183, 1217 |
| BciVI | GTATCC | 1 cut(s) | 1250 |
| BclI | TGATCA | 1 cut(s) | 1320 |
| BcnI | CCSGG | 1 cut(s) | 1333 |
| BcoDI | GTCTC | 2 cut(s) | 228, 539 |
| BfmI | CTRYAG | 1 cut(s) | 606 |
| BfuI | GTATCC | 1 cut(s) | 1250 |
| BglII | AGATCT | 1 cut(s) | 1046 |
| BisI | GCNGC | 3 cut(s) | 47, 601, 1037 |
| BlsI | GCNGC | 3 cut(s) | 48, 602, 1038 |
| Bme1390I | CCNGG | 1 cut(s) | 1333 |
| Bme18I | GGWCC | 2 cut(s) | 138, 641 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 641, 1175 |
| BmiI | GGNNCC | 2 cut(s) | 87, 1203 |
| BmrFI | CCNGG | 1 cut(s) | 1333 |
| BpiI | GAAGAC | 1 cut(s) | 1202 |
| BpuEI | CTTGAG | 2 cut(s) | 521, 1211 |
| BpuMI | CCSGG | 1 cut(s) | 1333 |
| BsaJI | CCNNGG | 3 cut(s) | 777, 912, 1113 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 353, 518 |
| Bse1I | ACTGG | 4 cut(s) | 89, 471, 831, 1062 |
| BseDI | CCNNGG | 3 cut(s) | 777, 912, 1113 |
| BseGI | GGATG | 2 cut(s) | 527, 787 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 353, 518 |
| BseMII | CTCAG | 2 cut(s) | 23, 1173 |
| BseNI | ACTGG | 4 cut(s) | 89, 471, 831, 1062 |
| BseRI | GAGGAG | 1 cut(s) | 1130 |
| BseXI | GCAGC | 2 cut(s) | 587, 1023 |
| BshFI | GGCC | 1 cut(s) | 1177 |
| BshNI | GGYRCC | 1 cut(s) | 1201 |
| BsiHKAI | GWGCWC | 1 cut(s) | 751 |
| BsiSI | CCGG | 2 cut(s) | 83, 1332 |
| BslFI | GGGAC | 1 cut(s) | 802 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 353, 518 |
| BsmAI | GTCTC | 2 cut(s) | 228, 539 |
| BsmFI | GGGAC | 1 cut(s) | 802 |
| BsmI | GAATGC | 1 cut(s) | 1127 |
| BsnI | GGCC | 1 cut(s) | 1177 |
| Bsp1286I | GDGCHC | 1 cut(s) | 751 |
| Bsp1407I | TGTACA | 1 cut(s) | 456 |
| Bsp143I | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| BspACI | CCGC | 1 cut(s) | 47 |
| BspANI | GGCC | 1 cut(s) | 1177 |
| BspCNI | CTCAG | 2 cut(s) | 22, 1172 |
| BspHI | TCATGA | 1 cut(s) | 1371 |
| BspLI | GGNNCC | 2 cut(s) | 87, 1203 |
| BspMAI | CTGCAG | 1 cut(s) | 610 |
| BspPI | GGATC | 3 cut(s) | 77, 80, 93 |
| BspT107I | GGYRCC | 1 cut(s) | 1201 |
| BsrGI | TGTACA | 1 cut(s) | 456 |
| BsrI | ACTGG | 4 cut(s) | 89, 471, 831, 1062 |
| BssECI | CCNNGG | 3 cut(s) | 777, 912, 1113 |
| BssMI | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| BssSI | CACGAG | 1 cut(s) | 645 |
| BssT1I | CCWWGG | 1 cut(s) | 912 |
| Bst2BI | CACGAG | 1 cut(s) | 645 |
| Bst4CI | ACNGT | 2 cut(s) | 1201, 1240 |
| BstAUI | TGTACA | 1 cut(s) | 456 |
| BstC8I | GCNNGC | 4 cut(s) | 104, 900, 966, 986 |
| BstDEI | CTNAG | 7 cut(s) | 9, 196, 497, 513, 891, 1159, 1171 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 351, 516 |
| BstF5I | GGATG | 2 cut(s) | 527, 787 |
| BstKTI | GATC | 6 cut(s) | 72, 88, 274, 400, 1049, 1323 |
| BstMAI | GTCTC | 2 cut(s) | 228, 539 |
| BstMBI | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 363 |
| BstNSI | RCATGY | 2 cut(s) | 106, 861 |
| BstSCI | CCNGG | 1 cut(s) | 1331 |
| BstSFI | CTRYAG | 1 cut(s) | 606 |
| BstV1I | GCAGC | 2 cut(s) | 587, 1023 |
| BstV2I | GAAGAC | 1 cut(s) | 1202 |
| BstX2I | RGATCY | 2 cut(s) | 85, 1046 |
| BstYI | RGATCY | 2 cut(s) | 85, 1046 |
| BsuI | GTATCC | 1 cut(s) | 1250 |
| BsuRI | GGCC | 1 cut(s) | 1177 |
| BtsCI | GGATG | 2 cut(s) | 527, 787 |
| BtsI | GCAGTG | 1 cut(s) | 1281 |
| BtsIMutI | CAGTG | 4 cut(s) | 79, 838, 1236, 1281 |
| Cac8I | GCNNGC | 4 cut(s) | 104, 900, 966, 986 |
| CciI | TCATGA | 1 cut(s) | 1371 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 641, 1175 |
| Csp6I | GTAC | 2 cut(s) | 278, 457 |
| CviAII | CATG | 9 cut(s) | 25, 103, 290, 454, 548, 629, 851, 858, 1372 |
| CviQI | GTAC | 2 cut(s) | 278, 457 |
| DdeI | CTNAG | 7 cut(s) | 9, 196, 497, 513, 891, 1159, 1171 |
| DpnI | GATC | 6 cut(s) | 71, 87, 273, 399, 1048, 1322 |
| DpnII | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| DraI | TTTAAA | 1 cut(s) | 661 |
| Eco130I | CCWWGG | 1 cut(s) | 912 |
| Eco47I | GGWCC | 2 cut(s) | 138, 641 |
| Eco57I | CTGAAG | 1 cut(s) | 1010 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 351, 516 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1175 |
| EcoRI | GAATTC | 3 cut(s) | 484, 872, 1367 |
| EcoT14I | CCWWGG | 1 cut(s) | 912 |
| ErhI | CCWWGG | 1 cut(s) | 912 |
| FaeI | CATG | 9 cut(s) | 28, 106, 293, 457, 551, 632, 854, 861, 1375 |
| FaqI | GGGAC | 1 cut(s) | 802 |
| FatI | CATG | 9 cut(s) | 24, 102, 289, 453, 547, 628, 850, 857, 1371 |
| FbaI | TGATCA | 1 cut(s) | 1320 |
| Fnu4HI | GCNGC | 3 cut(s) | 47, 601, 1037 |
| FokI | GGATG | 2 cut(s) | 534, 794 |
| Fsp4HI | GCNGC | 3 cut(s) | 47, 601, 1037 |
| GluI | GCNGC | 3 cut(s) | 47, 601, 1037 |
| HaeIII | GGCC | 1 cut(s) | 1177 |
| HapII | CCGG | 2 cut(s) | 83, 1332 |
| Hin1II | CATG | 9 cut(s) | 28, 106, 293, 457, 551, 632, 854, 861, 1375 |
| HincII | GTYRAC | 2 cut(s) | 730, 1218 |
| HindII | GTYRAC | 2 cut(s) | 730, 1218 |
| HindIII | AAGCTT | 1 cut(s) | 755 |
| HinfI | GANTC | 4 cut(s) | 361, 410, 575, 1248 |
| HpaII | CCGG | 2 cut(s) | 83, 1332 |
| HphI | GGTGA | 4 cut(s) | 409, 493, 839, 1330 |
| Hpy166II | GTNNAC | 4 cut(s) | 278, 730, 863, 1218 |
| Hpy188I | TCNGA | 7 cut(s) | 314, 530, 753, 1114, 1138, 1162, 1418 |
| Hpy188III | TCNNGA | 4 cut(s) | 519, 566, 1228, 1372 |
| Hpy8I | GTNNAC | 4 cut(s) | 278, 730, 863, 1218 |
| Hpy99I | CGWCG | 1 cut(s) | 206 |
| HpyAV | CCTTC | 5 cut(s) | 347, 472, 565, 943, 1076 |
| HpyCH4III | ACNGT | 2 cut(s) | 1201, 1240 |
| HpyCH4IV | ACGT | 1 cut(s) | 168 |
| HpyCH4V | TGCA | 5 cut(s) | 608, 671, 857, 1105, 1125 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 363 |
| HpyF3I | CTNAG | 7 cut(s) | 9, 196, 497, 513, 891, 1159, 1171 |
| HpySE526I | ACGT | 1 cut(s) | 168 |
| Hsp92II | CATG | 9 cut(s) | 28, 106, 293, 457, 551, 632, 854, 861, 1375 |
| Ksp22I | TGATCA | 1 cut(s) | 1320 |
| Kzo9I | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| LmnI | GCTCC | 3 cut(s) | 349, 754, 1033 |
| Lsp1109I | GCAGC | 2 cut(s) | 587, 1023 |
| MaeII | ACGT | 1 cut(s) | 168 |
| MaeIII | GTNAC | 3 cut(s) | 550, 772, 1276 |
| MalI | GATC | 6 cut(s) | 71, 87, 273, 399, 1048, 1322 |
| MboI | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| MboII | GAAGA | 9 cut(s) | 175, 392, 626, 694, 992, 1157, 1160, 1163, 1207 |
| MflI | RGATCY | 2 cut(s) | 85, 1046 |
| MhlI | GDGCHC | 1 cut(s) | 751 |
| MlyI | GAGTC | 1 cut(s) | 584 |
| MmeI | TCCRAC | 3 cut(s) | 143, 337, 619 |
| MseI | TTAA | 7 cut(s) | 60, 432, 660, 689, 701, 837, 918 |
| MslI | CAYNNNNRTG | 2 cut(s) | 633, 1241 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspI | CCGG | 2 cut(s) | 83, 1332 |
| MspR9I | CCNGG | 1 cut(s) | 1333 |
| Mva1269I | GAATGC | 1 cut(s) | 1127 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 363 |
| NciI | CCSGG | 1 cut(s) | 1333 |
| NdeII | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| NlaIII | CATG | 9 cut(s) | 28, 106, 293, 457, 551, 632, 854, 861, 1375 |
| NlaIV | GGNNCC | 2 cut(s) | 87, 1203 |
| NmuCI | GTSAC | 2 cut(s) | 772, 1276 |
| NspI | RCATGY | 2 cut(s) | 106, 861 |
| PaeI | GCATGC | 1 cut(s) | 106 |
| PagI | TCATGA | 1 cut(s) | 1371 |
| PctI | GAATGC | 1 cut(s) | 1127 |
| PfeI | GAWTC | 3 cut(s) | 361, 410, 1248 |
| PkrI | GCNGC | 3 cut(s) | 48, 602, 1038 |
| PleI | GAGTC | 1 cut(s) | 583 |
| PpsI | GAGTC | 1 cut(s) | 583 |
| PspN4I | GGNNCC | 2 cut(s) | 87, 1203 |
| PspPI | GGNCC | 3 cut(s) | 138, 641, 1175 |
| PstI | CTGCAG | 1 cut(s) | 610 |
| PsuI | RGATCY | 2 cut(s) | 85, 1046 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| RsaI | GTAC | 2 cut(s) | 279, 458 |
| RsaNI | GTAC | 2 cut(s) | 278, 457 |
| RseI | CAYNNNNRTG | 2 cut(s) | 633, 1241 |
| SaqAI | TTAA | 7 cut(s) | 60, 432, 660, 689, 701, 837, 918 |
| SatI | GCNGC | 3 cut(s) | 47, 601, 1037 |
| Sau3AI | GATC | 6 cut(s) | 69, 85, 271, 397, 1046, 1320 |
| Sau96I | GGNCC | 3 cut(s) | 138, 641, 1175 |
| SchI | GAGTC | 1 cut(s) | 584 |
| ScrFI | CCNGG | 1 cut(s) | 1333 |
| SduI | GDGCHC | 1 cut(s) | 751 |
| SfcI | CTRYAG | 1 cut(s) | 606 |
| SinI | GGWCC | 2 cut(s) | 138, 641 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 633, 1241 |
| SmlI | CTYRAG | 2 cut(s) | 536, 1226 |
| SmoI | CTYRAG | 2 cut(s) | 536, 1226 |
| SphI | GCATGC | 1 cut(s) | 106 |
| SsiI | CCGC | 1 cut(s) | 47 |
| StyD4I | CCNGG | 1 cut(s) | 1331 |
| StyI | CCWWGG | 1 cut(s) | 912 |
| TaaI | ACNGT | 2 cut(s) | 1201, 1240 |
| TaiI | ACGT | 1 cut(s) | 171 |
| TaqI | TCGA | 2 cut(s) | 1391, 1407 |
| TaqII | GACCGA | 1 cut(s) | 791 |
| TatI | WGTACW | 2 cut(s) | 277, 456 |
| TauI | GCSGC | 1 cut(s) | 49 |
| TfiI | GAWTC | 3 cut(s) | 361, 410, 1248 |
| Tru1I | TTAA | 7 cut(s) | 60, 432, 660, 689, 701, 837, 918 |
| Tru9I | TTAA | 7 cut(s) | 60, 432, 660, 689, 701, 837, 918 |
| TscAI | CASTG | 4 cut(s) | 79, 838, 1243, 1281 |
| TseFI | GTSAC | 2 cut(s) | 772, 1276 |
| TseI | GCWGC | 2 cut(s) | 600, 1036 |
| Tsp45I | GTSAC | 2 cut(s) | 772, 1276 |
| TspDTI | ATGAA | 9 cut(s) | 293, 306, 308, 442, 933, 992, 1095, 1158, 1360 |
| TspGWI | ACGGA | 2 cut(s) | 311, 1046 |
| TspRI | CASTG | 4 cut(s) | 79, 838, 1243, 1281 |
| VpaK11BI | GGWCC | 2 cut(s) | 138, 641 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 351, 516 |
| XceI | RCATGY | 2 cut(s) | 106, 861 |