Rroxscaffold_1G00051230

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000062
Physical Location & Seq
Reverse (-)
71887203 .. 71889536
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051230.1

Sequence Viewer

Length: 1377 bp
ATGAAACCAAAGACAAAGCGTCAAAGGAGAGTTCCAGCCGATAGGGTCAGTGGATTACCAGAACATGATAGGATTAGTGGATTACCAGATGCGCTTCTTTGTCACATACTTTCTTTCCTTCAAACAATCTATGCTGTGAGGACCTGTGTTCTGTCTACAAGATGGAAGAATATATGGGAGTCTGTTCCTAATTTGGACTTCGACAGTGGCTCTTTTAGTGAATCTGCTAAATTGAAGACGGTTGGTGATCATGTACTTTTCTTTCGTAACTCATCAAACATTCAAAGATTTCGTCTTAATTGGAATTATAATGGTATTGATCAGTCTTGTATTAATGGTTGGATCCACACTGCCATGAAGCGTAATGTTATTGAACTCGATCTTTTTGTTAATAGTATACTTCATTGCCATTTTTTTGAGTTGCCCAAAAGCGTCTACATGTGCAAGACACTCATGATTCTGAAGCTGAGATCAAACTTCATTACCAATTATATTCCTGCATCAGGGTGTTTCCCAAATCTCAAGTCTCTCCATGTTACAGTTGATCATTATATTTGTACGACCTCAATGGTTCAGTTCTTCTCTAGCTGCCCGGTACTTGAAGATTTGACTATAGACGGTCACCTTACATGGAGTGTTTCTGTTTTAGAAATTGCTGCCCCTGCACTGAAGACACTAAGCATATGTTGTAATATTTTGTATCCTGGTAGTCAGTACAACTATTCGATTAATTGCCCAAAGCTTGAGAATCTTGTTCTAAAGGGGAATTTTTTGGCAAACTTTTATTTGGGCCAAGCAGAATCCCTAGTTAAAGCCAATATTGAGCTAATTCGCCATTTTTCGAAGAAAGAATCTGGCTTTTCCCTAGTTACTGCGCTTTTGGCAGGAGTATCCAATGTTACTTTTTTATGTTTTTCAGCTCATTGTTTTGAGGTTGGTTCTCTGCCTGCTTTTGGTAATTTGAGCAAATTGAGGTTGGTGCTTTACAAATGCTTTCCCTGGGAATTGCTAACAGAGTTGCTTAGCAGATCACCTCATCTGCAGTATCTTGTCTTAGAACATAATGACACTAGTGTTAACGAAAAAGAATCCAAGTATGGAGCAGACTCAGAACCTGATGAATGCCCAAAGCTGCGATGGCGTGCACCAGAGCTTGTGCCGAGTTGTTTAGAATCAAACCTCGAGACTATCTCCATTGAGGGATTCAAGGGGCAGCTGAATACAATGGAAGTGGCTAAATATTTCTTAAGGAACTGTGAAGTTTTGAAGAAGTTGACGCTTTCTTCAGATCCTTTGTGTGAAGAAATGCAGGCCTTACACAAAGAGCTTTTAATGGTTCCAAAGGTTTCGAAGGCTTGTGTGGTTAATTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

458

Amino Acids

51.91

Weight (kDa)

8.18

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 64 2.8e-08 F-box domain
LRR_At5g56370 PF24758 112 - 257 6.5e-14 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 384 - 427 2.8e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccI GTMKAC 3 cut(s) 155, 397, 435
AclWI GGATC 3 cut(s) 337, 350, 1283
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 3 cut(s) 482, 689, 1269
AfaI GTAC 4 cut(s) 255, 559, 597, 716
AfiI CCNNNNNNNGG 2 cut(s) 503, 953
AflII CTTAAG 1 cut(s) 1246
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 7 cut(s) 122, 235, 284, 374, 602, 1207, 1267
AhdI GACNNNNNGTC 1 cut(s) 18
AhlI ACTAGT 1 cut(s) 1070
AjnI CCWGG 2 cut(s) 703, 998
AluBI AGCT 9 cut(s) 466, 588, 742, 826, 920, 1132, 1153, 1216, 1327
AluI AGCT 9 cut(s) 466, 588, 742, 826, 920, 1132, 1153, 1216, 1327
Alw21I GWGCWC 1 cut(s) 1147
Alw26I GTCTC 2 cut(s) 531, 1178
Alw44I GTGCAC 1 cut(s) 1143
AlwI GGATC 3 cut(s) 337, 350, 1283
AlwNI CAGNNNCTG 1 cut(s) 1115
Ama87I CYCGRG 1 cut(s) 1181
AoxI GGCC 2 cut(s) 790, 1311
ApaLI GTGCAC 1 cut(s) 1143
ApeKI GCWGC 4 cut(s) 588, 656, 1132, 1213
ApoI RAATTY 1 cut(s) 766
ArsI GACNNNNNNTTYG 4 cut(s) 277, 309, 509, 541
AseI ATTAAT 2 cut(s) 333, 729
AspLEI GCGC 2 cut(s) 94, 877
AspS9I GGNCC 2 cut(s) 141, 790
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 3 cut(s) 257, 614, 1023
AsuII TTCGAA 2 cut(s) 842, 1349
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 1147
BamHI GGATCC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 242, 677
Bbv12I GWGCWC 1 cut(s) 1147
BbvI GCAGC 4 cut(s) 575, 643, 1119, 1225
BccI CCATC 2 cut(s) 156, 1131
BciT130I CCWGG 2 cut(s) 705, 1000
BciVI GTATCC 2 cut(s) 711, 901
BclI TGATCA 3 cut(s) 247, 319, 544
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 531, 1178
BcuI ACTAGT 1 cut(s) 1070
BfaI CTAG 4 cut(s) 585, 806, 866, 1071
BfmI CTRYAG 2 cut(s) 612, 1040
BfrI CTTAAG 1 cut(s) 1246
BfuI GTATCC 2 cut(s) 711, 901
BisI GCNGC 4 cut(s) 589, 657, 1133, 1214
BlpI GCTNAGC 1 cut(s) 1022
BlsI GCNGC 4 cut(s) 590, 658, 1134, 1215
Bme1390I CCNGG 3 cut(s) 593, 705, 1000
Bme18I GGWCC 1 cut(s) 141
BmeRI GACNNNNNGTC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 2 cut(s) 141, 790
BmiI GGNNCC 2 cut(s) 344, 1338
BmrFI CCNGG 3 cut(s) 593, 705, 1000
BmsI GCATC 2 cut(s) 79, 509
BpiI GAAGAC 2 cut(s) 242, 677
BplI GAGNNNNNCTC 2 cut(s) 1175, 1207
Bpu1102I GCTNAGC 1 cut(s) 1022
Bpu14I TTCGAA 2 cut(s) 842, 1349
BpuEI CTTGAG 2 cut(s) 506, 764
BpuMI CCSGG 1 cut(s) 593
BsaJI CCNNGG 2 cut(s) 998, 999
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 953
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 705, 1000
BseDI CCNNGG 2 cut(s) 998, 999
BseLI CCNNNNNNNGG 2 cut(s) 503, 953
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 458, 1122
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 4 cut(s) 575, 643, 1119, 1225
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 2 cut(s) 792, 1313
BsiHKAI GWGCWC 1 cut(s) 1147
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 503, 953
BsmAI GTCTC 2 cut(s) 531, 1178
BsmI GAATGC 1 cut(s) 1127
BsnI GGCC 2 cut(s) 792, 1313
BsoBI CYCGRG 1 cut(s) 1181
Bsp119I TTCGAA 2 cut(s) 842, 1349
Bsp1286I GDGCHC 1 cut(s) 1147
Bsp143I GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
Bsp1720I GCTNAGC 1 cut(s) 1022
BspANI GGCC 2 cut(s) 792, 1313
BspCNI CTCAG 2 cut(s) 459, 1121
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 344, 1338
BspMAI CTGCAG 1 cut(s) 1044
BspPI GGATC 3 cut(s) 337, 350, 1283
BspT104I TTCGAA 2 cut(s) 842, 1349
BspTI CTTAAG 1 cut(s) 1246
BsrDI GCAATG 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 998, 999
BssMI GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
BssNAI GTATAC 1 cut(s) 398
Bst1107I GTATAC 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 705, 1000
Bst4CI ACNGT 5 cut(s) 206, 241, 541, 620, 1256
BstAFI CTTAAG 1 cut(s) 1246
BstBI TTCGAA 2 cut(s) 842, 1349
BstC8I GCNNGC 3 cut(s) 948, 1143, 1311
BstDEI CTNAG 5 cut(s) 467, 677, 1022, 1054, 1108
BstEII GGTNACC 1 cut(s) 620
BstENI CCTNNNNNAGG 1 cut(s) 501
BstHHI GCGC 2 cut(s) 94, 877
BstKTI GATC 8 cut(s) 250, 322, 345, 382, 473, 547, 1031, 1291
BstMAI GTCTC 2 cut(s) 531, 1178
BstMBI GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 662, 881, 1138
BstNI CCWGG 2 cut(s) 705, 1000
BstNSI RCATGY 1 cut(s) 442
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 591, 703, 998
BstSFI CTRYAG 2 cut(s) 612, 1040
BstSLI GKGCMC 1 cut(s) 1147
BstV1I GCAGC 4 cut(s) 575, 643, 1119, 1225
BstV2I GAAGAC 2 cut(s) 242, 677
BstX2I RGATCY 2 cut(s) 342, 1288
BstYI RGATCY 2 cut(s) 342, 1288
BstZ17I GTATAC 1 cut(s) 398
BsuI GTATCC 2 cut(s) 711, 901
BsuRI GGCC 2 cut(s) 792, 1313
BtgZI GCGATG 1 cut(s) 1150
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 4 cut(s) 55, 211, 348, 665
Cac8I GCNNGC 3 cut(s) 948, 1143, 1311
CaiI CAGNNNCTG 1 cut(s) 1115
CciI TCATGA 1 cut(s) 453
CfoI GCGC 2 cut(s) 94, 877
Cfr13I GGNCC 2 cut(s) 141, 790
CseI GACGC 3 cut(s) 8, 421, 1285
Csp6I GTAC 4 cut(s) 254, 558, 596, 715
CspCI CAANNNNNGTGG 2 cut(s) 1212, 1247
CviAII CATG 7 cut(s) 65, 251, 355, 439, 454, 533, 630
CviQI GTAC 4 cut(s) 254, 558, 596, 715
DdeI CTNAG 5 cut(s) 467, 677, 1022, 1054, 1108
DpnI GATC 8 cut(s) 249, 321, 344, 381, 472, 546, 1030, 1290
DpnII GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
DriI GACNNNNNGTC 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 1313
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 3 cut(s) 482, 689, 1269
Eco88I CYCGRG 1 cut(s) 1181
Eco91I GGTNACC 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 141
EcoO65I GGTNACC 1 cut(s) 620
EcoRII CCWGG 2 cut(s) 703, 998
FaeI CATG 7 cut(s) 68, 254, 358, 442, 457, 536, 633
FatI CATG 7 cut(s) 64, 250, 354, 438, 453, 532, 629
FauNDI CATATG 1 cut(s) 683
FbaI TGATCA 3 cut(s) 247, 319, 544
FblI GTMKAC 3 cut(s) 155, 397, 435
Fnu4HI GCNGC 4 cut(s) 589, 657, 1133, 1214
Fsp4HI GCNGC 4 cut(s) 589, 657, 1133, 1214
FspBI CTAG 4 cut(s) 585, 806, 866, 1071
GlaI GCGC 2 cut(s) 93, 876
GluI GCNGC 4 cut(s) 589, 657, 1133, 1214
HaeIII GGCC 2 cut(s) 792, 1313
HapII CCGG 1 cut(s) 593
HgaI GACGC 3 cut(s) 8, 421, 1285
HhaI GCGC 2 cut(s) 94, 877
Hin1II CATG 7 cut(s) 68, 254, 358, 442, 457, 536, 633
Hin6I GCGC 2 cut(s) 92, 875
HinP1I GCGC 2 cut(s) 92, 875
HincII GTYRAC 2 cut(s) 1078, 1275
HindII GTYRAC 2 cut(s) 1078, 1275
HindIII AAGCTT 1 cut(s) 740
HpaI GTTAAC 1 cut(s) 1078
HpaII CCGG 1 cut(s) 593
HphI GGTGA 3 cut(s) 257, 614, 1023
Hpy166II GTNNAC 6 cut(s) 156, 398, 436, 1078, 1145, 1275
Hpy188I TCNGA 3 cut(s) 462, 1111, 1288
Hpy188III TCNNGA 2 cut(s) 454, 1183
Hpy8I GTNNAC 6 cut(s) 156, 398, 436, 1078, 1145, 1275
HpyAV CCTTC 2 cut(s) 128, 1345
HpyCH4III ACNGT 5 cut(s) 206, 241, 541, 620, 1256
HpyCH4V TGCA 6 cut(s) 444, 500, 665, 1042, 1145, 1309
HpyF10VI GCNNNNNNNGC 3 cut(s) 662, 881, 1138
HpyF3I CTNAG 5 cut(s) 467, 677, 1022, 1054, 1108
Hsp92II CATG 7 cut(s) 68, 254, 358, 442, 457, 536, 633
HspAI GCGC 2 cut(s) 92, 875
Ksp22I TGATCA 3 cut(s) 247, 319, 544
KspAI GTTAAC 1 cut(s) 1078
Kzo9I GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
LmnI GCTCC 1 cut(s) 1100
Lsp1109I GCAGC 4 cut(s) 575, 643, 1119, 1225
LweI GCATC 2 cut(s) 79, 509
MaeI CTAG 4 cut(s) 585, 806, 866, 1071
MaeIII GTNAC 6 cut(s) 101, 266, 535, 620, 868, 898
MalI GATC 8 cut(s) 249, 321, 344, 381, 472, 546, 1030, 1290
MboI GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
MboII GAAGA 9 cut(s) 178, 247, 571, 614, 682, 856, 1275, 1279, 1313
MflI RGATCY 2 cut(s) 342, 1288
MhlI GDGCHC 1 cut(s) 1147
MlyI GAGTC 2 cut(s) 188, 1100
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 7 cut(s) 132, 574, 925, 966, 1044, 1190, 1192
MseI TTAA 9 cut(s) 297, 333, 390, 729, 810, 1077, 1247, 1331, 1365
MslI CAYNNNNRTG 2 cut(s) 353, 505
MspA1I CMGCKG 1 cut(s) 1216
MspCI CTTAAG 1 cut(s) 1246
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 3 cut(s) 593, 705, 1000
Mva1269I GAATGC 1 cut(s) 1127
MvaI CCWGG 2 cut(s) 705, 1000
MwoI GCNNNNNNNGC 3 cut(s) 662, 881, 1138
NciI CCSGG 1 cut(s) 593
NdeI CATATG 1 cut(s) 683
NdeII GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
NlaIII CATG 7 cut(s) 68, 254, 358, 442, 457, 536, 633
NlaIV GGNNCC 2 cut(s) 344, 1338
NmeAIII GCCGAG 1 cut(s) 1185
NmuCI GTSAC 2 cut(s) 101, 620
NspI RCATGY 1 cut(s) 442
NspV TTCGAA 2 cut(s) 842, 1349
PaeR7I CTCGAG 1 cut(s) 1181
PagI TCATGA 1 cut(s) 453
PasI CCCWGGG 1 cut(s) 999
PceI AGGCCT 1 cut(s) 1313
PciI ACATGT 1 cut(s) 438
PctI GAATGC 1 cut(s) 1127
PfeI GAWTC 8 cut(s) 221, 457, 748, 800, 851, 1088, 1172, 1203
PkrI GCNGC 4 cut(s) 590, 658, 1134, 1215
PleI GAGTC 2 cut(s) 187, 1100
PpsI GAGTC 2 cut(s) 187, 1100
PpuMI RGGWCCY 1 cut(s) 141
PscI ACATGT 1 cut(s) 438
PshBI ATTAAT 2 cut(s) 333, 729
PsiI TTATAA 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 703, 998
PspEI GGTNACC 1 cut(s) 620
PspGI CCWGG 2 cut(s) 703, 998
PspN4I GGNNCC 2 cut(s) 344, 1338
PspPI GGNCC 2 cut(s) 141, 790
PspPPI RGGWCCY 1 cut(s) 141
PstI CTGCAG 1 cut(s) 1044
PstNI CAGNNNCTG 1 cut(s) 1115
PsuI RGATCY 2 cut(s) 342, 1288
PvuII CAGCTG 1 cut(s) 1216
RsaI GTAC 4 cut(s) 255, 559, 597, 716
RsaNI GTAC 4 cut(s) 254, 558, 596, 715
RseI CAYNNNNRTG 2 cut(s) 353, 505
SaqAI TTAA 9 cut(s) 297, 333, 390, 729, 810, 1077, 1247, 1331, 1365
SatI GCNGC 4 cut(s) 589, 657, 1133, 1214
Sau3AI GATC 8 cut(s) 247, 319, 342, 379, 470, 544, 1028, 1288
Sau96I GGNCC 2 cut(s) 141, 790
SchI GAGTC 2 cut(s) 188, 1100
ScrFI CCNGG 3 cut(s) 593, 705, 1000
SduI GDGCHC 1 cut(s) 1147
SfaNI GCATC 2 cut(s) 79, 509
SfcI CTRYAG 2 cut(s) 612, 1040
Sfr274I CTCGAG 1 cut(s) 1181
SfuI TTCGAA 2 cut(s) 842, 1349
SinI GGWCC 1 cut(s) 141
SlaI CTCGAG 1 cut(s) 1181
SmiMI CAYNNNNRTG 2 cut(s) 353, 505
SmlI CTYRAG 4 cut(s) 521, 743, 1181, 1246
SmoI CTYRAG 4 cut(s) 521, 743, 1181, 1246
SpeI ACTAGT 1 cut(s) 1070
SseBI AGGCCT 1 cut(s) 1313
SspI AATATT 3 cut(s) 694, 820, 1241
SspMI CTAG 4 cut(s) 585, 806, 866, 1071
StuI AGGCCT 1 cut(s) 1313
StyD4I CCNGG 3 cut(s) 591, 703, 998
TaaI ACNGT 5 cut(s) 206, 241, 541, 620, 1256
TaqI TCGA 6 cut(s) 201, 378, 725, 842, 1182, 1349
TatI WGTACW 2 cut(s) 253, 714
TfiI GAWTC 8 cut(s) 221, 457, 748, 800, 851, 1088, 1172, 1203
Tru1I TTAA 9 cut(s) 297, 333, 390, 729, 810, 1077, 1247, 1331, 1365
Tru9I TTAA 9 cut(s) 297, 333, 390, 729, 810, 1077, 1247, 1331, 1365
TscAI CASTG 4 cut(s) 55, 211, 355, 672
TseFI GTSAC 2 cut(s) 101, 620
TseI GCWGC 4 cut(s) 588, 656, 1132, 1213
Tsp45I GTSAC 2 cut(s) 101, 620
TspDTI ATGAA 5 cut(s) 17, 371, 392, 469, 1134
TspRI CASTG 4 cut(s) 55, 211, 355, 672
Vha464I CTTAAG 1 cut(s) 1246
VneI GTGCAC 1 cut(s) 1143
VpaK11BI GGWCC 1 cut(s) 141
VspI ATTAAT 2 cut(s) 333, 729
XagI CCTNNNNNAGG 1 cut(s) 501
XapI RAATTY 1 cut(s) 766
XceI RCATGY 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 1134
XhoI CTCGAG 1 cut(s) 1181
XmiI GTMKAC 3 cut(s) 155, 397, 435
XspI CTAG 4 cut(s) 585, 806, 866, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.