MD03G1253200.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000062
Physical Location & Seq
Reverse (-)
34027587 .. 34032963
5377 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1253200.v1.1.491

Sequence Viewer

Length: 1521 bp
ATGTGTGTTCTGTTTTGTGCTTCACTCTCGTACTTCAGAGTTGCAGAGATAGTGGTGGTGACAACCAATTCATATTTTCCCCGGGCCATCACAGCAGCTCAGCTCTCACCAGCATCCAGAACAATGTTGTGGGTACAAATGAGTTTGAGGCCAAAGCGTCAAGGAGTTAGTGATAGGATAAGTGAATTACCAAATGATGTTCTTTGTCGCACACTTTCATTTCTTCCAACGAAGTACGCTGTGAGGACCACCGTTTTGTCAAAGATATGGAAGAACATATGGACTTCCGTACCCAATCTATACTTTTGTGACAATGACTACCCTGATGTTAATGCCTTTATGGCATTTGTGGATCGTGTACTTGACTCTCATGACTTATCACGCATCCAAAAATTCTGTCTTCATTCTTCCTGCTTCGACATCGAACCGTCTATTCTTAATCGTTGGATATGCACTGCAATTAGACACAATGTTCGTGAACTTGATCTTTTTGTTCACTCAGATGCAGAAGATTATTTTGAATTGCCTCAGACCCTTTTCACGAGCAAAAACCTAGAAGTTTTGAAGCTGCAATTCAATTTTATTGCCAATCCTCCTGCCTCAAAGTGTTTCCCAAGTCTCAAGTCACTCTGTGTTGTAATTCAGCATCCTGAAAGTATCTCAGTGAAGATGCTTTTTTCTTACCTCCCTGTACTTGAAGATTTGGAAATACGGGGATACCTTGAATATTATGATGTAGATGTCAACGTCTCAGCACCAGAACTGAGGAAATTAGGAATAAATTTAGCGTATGGAAATGCTGATGGTGGCAATGATCATAAGTTATGTGTTAATGCTCCAAAACTTGAATCCCTTGACGTCAAGCTGGATAGCCTGTCAAAGTTTTTATTGTTAATCAATGCAAATTCCGTCGTCAAGGCAAATGTTGACCTCCTGTACGAAGAACTGTCCAATGGTGGATCTGCAGATGTGGAATATAGTCTCGAGTATAAAATGCAGGCTGATCGTGCCATTGATATTCTGAAAAATATCTCCAATGTGAAGTACCTGTCTCTTTCAATTCGTAATTTGGAGGGTGATTTGCCTGCTTTTGACAATTTGAACCAATTGAACCTGGTTTTTTATGATTGCGGTTACTGGGGATTTCTAATAAAGTTACTCAGTAAATCACCTGACCTACAACATCTCGTCTTTGAACACGAGGATTGTAGCATATGCAATGAAGTAGACTTCCGGCAAGTACTTAATCCACCAAAGTTTGCGCCGCTTTCTCTGATGGTGCACCTCAAGACAATCACTGTAAACGGATTCAAGGGAAGGCGGGAAGAGGTGCAAGTGGTAAGGTACTTGTTAGAGAACGGGACATTTCTACAAAAGATGATCATTTCTATTAAAGGGATTCCAGGTCATCTATTTGACAACTTATACAGGGAAATTTTACAGTTTCCAAAGGTGTTCGATTGTCATGTTGAAATGCGATTGTGGGTTTCAGAATTGAATTATTATCCAGTGTGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

507

Amino Acids

57.99

Weight (kDa)

5.83

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 60 - 99 5.4e-08 F-box domain
LRR_At1g61320_AtMIF1 PF23622 121 - 462 1.2e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 146 - 286 2.6e-10 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 418 - 462 1.3e-11 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 861
AccI GTMKAC 1 cut(s) 1227
AciI CCGC 3 cut(s) 1131, 1265, 1321
AclWI GGATC 2 cut(s) 360, 967
AcsI RAATTY 4 cut(s) 392, 781, 904, 1434
AcuI CTGAAG 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 632
AjnI CCWGG 2 cut(s) 1113, 1402
AluBI AGCT 4 cut(s) 98, 103, 568, 865
AluI AGCT 4 cut(s) 98, 103, 568, 865
Alw21I GWGCWC 1 cut(s) 1284
Alw26I GTCTC 4 cut(s) 623, 754, 986, 1056
Alw44I GTGCAC 1 cut(s) 1280
AlwI GGATC 2 cut(s) 360, 967
Ama87I CYCGRG 2 cut(s) 81, 983
AoxI GGCC 2 cut(s) 84, 149
ApaLI GTGCAC 1 cut(s) 1280
ApeKI GCWGC 2 cut(s) 95, 568
ApoI RAATTY 4 cut(s) 392, 781, 904, 1434
ArsI GACNNNNNNTTYG 6 cut(s) 238, 270, 382, 414, 456, 488
AspLEI GCGC 1 cut(s) 1264
AspS9I GGNCC 2 cut(s) 84, 246
AsuC2I CCSGG 2 cut(s) 82, 83
AsuHPI GGTGA 4 cut(s) 70, 99, 1088, 1161
AvaI CYCGRG 2 cut(s) 81, 983
AvaII GGWCC 1 cut(s) 246
BaeGI GKGCMC 1 cut(s) 1284
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BauI CACGAG 2 cut(s) 541, 1199
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 1284
BbvI GCAGC 2 cut(s) 107, 555
BccI CCATC 3 cut(s) 95, 797, 1270
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 2 cut(s) 1115, 1404
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 2 cut(s) 814, 1380
BcnI CCSGG 2 cut(s) 82, 83
BcoDI GTCTC 4 cut(s) 623, 754, 986, 1056
BfaI CTAG 2 cut(s) 554, 1519
BfmI CTRYAG 1 cut(s) 963
BfuI GTATCC 1 cut(s) 710
BglI GCCNNNNNGGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 96, 569, 1265
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 3 cut(s) 97, 570, 1266
BmcAI AGTACT 1 cut(s) 1242
Bme1390I CCNGG 4 cut(s) 82, 83, 1115, 1404
Bme18I GGWCC 1 cut(s) 246
BmeT110I CYCGRG 2 cut(s) 81, 983
BmgT120I GGNCC 2 cut(s) 84, 246
BmrFI CCNGG 4 cut(s) 82, 83, 1115, 1404
BmrI ACTGGG 1 cut(s) 1147
BmsI GCATC 5 cut(s) 122, 393, 493, 655, 660
BmuI ACTGGG 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 392
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 605, 1271
BpuMI CCSGG 2 cut(s) 82, 83
BsaHI GRCGYC 1 cut(s) 858
BsaJI CCNNGG 2 cut(s) 80, 81
Bse1I ACTGG 2 cut(s) 1142, 1508
Bse3DI GCAATG 2 cut(s) 817, 1225
BseBI CCWGG 2 cut(s) 1115, 1404
BseDI CCNNGG 2 cut(s) 80, 81
BseGI GGATG 3 cut(s) 113, 384, 646
BseMI GCAATG 2 cut(s) 817, 1225
BseMII CTCAG 7 cut(s) 113, 513, 542, 675, 755, 765, 1174
BseNI ACTGG 2 cut(s) 1142, 1508
BseSI GKGCMC 1 cut(s) 1284
BseXI GCAGC 2 cut(s) 107, 555
BshFI GGCC 2 cut(s) 86, 151
BsiHKAI GWGCWC 1 cut(s) 1284
BsiHKCI CYCGRG 2 cut(s) 81, 983
BsiSI CCGG 2 cut(s) 82, 1234
BslFI GGGAC 1 cut(s) 1375
BsmAI GTCTC 4 cut(s) 623, 754, 986, 1056
BsmBI CGTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 1375
BsnI GGCC 2 cut(s) 86, 151
BsoBI CYCGRG 2 cut(s) 81, 983
Bsp1286I GDGCHC 1 cut(s) 1284
Bsp143I GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 3 cut(s) 1131, 1265, 1321
BspANI GGCC 2 cut(s) 86, 151
BspCNI CTCAG 7 cut(s) 112, 512, 541, 674, 756, 764, 1173
BspHI TCATGA 1 cut(s) 370
BspMAI CTGCAG 1 cut(s) 967
BspPI GGATC 2 cut(s) 360, 967
BsrDI GCAATG 2 cut(s) 817, 1225
BsrI ACTGG 2 cut(s) 1142, 1508
BssECI CCNNGG 2 cut(s) 80, 81
BssMI GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 2 cut(s) 541, 1199
Bst2BI CACGAG 2 cut(s) 541, 1199
Bst2UI CCWGG 2 cut(s) 1115, 1404
Bst4CI ACNGT 5 cut(s) 253, 429, 948, 1300, 1443
Bst6I CTCTTC 1 cut(s) 1320
BstACI GRCGYC 1 cut(s) 858
BstC8I GCNNGC 2 cut(s) 999, 1086
BstDEI CTNAG 7 cut(s) 99, 499, 528, 661, 751, 764, 1160
BstF5I GGATG 3 cut(s) 113, 384, 646
BstHHI GCGC 1 cut(s) 1264
BstKTI GATC 6 cut(s) 355, 487, 817, 962, 1006, 1383
BstMAI GTCTC 4 cut(s) 623, 754, 986, 1056
BstMBI GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
BstMWI GCNNNNNNNGC 3 cut(s) 92, 341, 1007
BstNI CCWGG 2 cut(s) 1115, 1404
BstSCI CCNGG 4 cut(s) 80, 81, 1113, 1402
BstSFI CTRYAG 1 cut(s) 963
BstSLI GKGCMC 1 cut(s) 1284
BstV1I GCAGC 2 cut(s) 107, 555
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 959
BstYI RGATCY 1 cut(s) 959
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 2 cut(s) 86, 151
BtsCI GGATG 3 cut(s) 113, 384, 646
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 4 cut(s) 453, 669, 1296, 1515
Cac8I GCNNGC 2 cut(s) 999, 1086
CciI TCATGA 1 cut(s) 370
CfoI GCGC 1 cut(s) 1264
Cfr13I GGNCC 2 cut(s) 84, 246
Cfr9I CCCGGG 1 cut(s) 81
CseI GACGC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 1113
CviAII CATG 2 cut(s) 371, 1466
CviJI RGCY 8 cut(s) 86, 98, 103, 151, 568, 865, 873, 1001
CviKI_1 RGCY 8 cut(s) 86, 98, 103, 151, 568, 865, 873, 1001
DdeI CTNAG 7 cut(s) 99, 499, 528, 661, 751, 764, 1160
DpnI GATC 6 cut(s) 354, 486, 816, 961, 1005, 1382
DpnII GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
DraIII CACNNNGTG 1 cut(s) 632
Eam1104I CTCTTC 1 cut(s) 1320
EarI CTCTTC 1 cut(s) 1320
Eco47I GGWCC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 19
Eco88I CYCGRG 2 cut(s) 81, 983
EcoRII CCWGG 2 cut(s) 1113, 1402
Esp3I CGTCTC 1 cut(s) 754
FaeI CATG 2 cut(s) 374, 1469
FaqI GGGAC 1 cut(s) 1375
FatI CATG 2 cut(s) 370, 1465
FauI CCCGC 1 cut(s) 1314
FauNDI CATATG 2 cut(s) 278, 1214
FbaI TGATCA 2 cut(s) 814, 1380
FblI GTMKAC 1 cut(s) 1227
Fnu4HI GCNGC 3 cut(s) 96, 569, 1265
FokI GGATG 3 cut(s) 100, 371, 633
Fsp4HI GCNGC 3 cut(s) 96, 569, 1265
FspBI CTAG 2 cut(s) 554, 1519
GlaI GCGC 1 cut(s) 1263
GluI GCNGC 3 cut(s) 96, 569, 1265
HaeIII GGCC 2 cut(s) 86, 151
HapII CCGG 2 cut(s) 82, 1234
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 1264
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 2 cut(s) 374, 1469
Hin6I GCGC 1 cut(s) 1262
HinP1I GCGC 1 cut(s) 1262
HincII GTYRAC 2 cut(s) 745, 928
HindII GTYRAC 2 cut(s) 745, 928
HinfI GANTC 4 cut(s) 365, 848, 1308, 1399
HpaII CCGG 2 cut(s) 82, 1234
HphI GGTGA 4 cut(s) 70, 99, 1088, 1161
Hpy166II GTNNAC 8 cut(s) 359, 479, 496, 745, 928, 1228, 1282, 1303
Hpy188I TCNGA 6 cut(s) 38, 502, 531, 1023, 1275, 1492
Hpy188III TCNNGA 7 cut(s) 117, 371, 476, 541, 650, 983, 1288
Hpy8I GTNNAC 8 cut(s) 359, 479, 496, 745, 928, 1228, 1282, 1303
Hpy99I CGWCG 1 cut(s) 914
HpyAV CCTTC 1 cut(s) 1311
HpyCH4III ACNGT 5 cut(s) 253, 429, 948, 1300, 1443
HpyCH4IV ACGT 2 cut(s) 747, 858
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 341, 1007
HpyF3I CTNAG 7 cut(s) 99, 499, 528, 661, 751, 764, 1160
HpySE526I ACGT 2 cut(s) 747, 858
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 2 cut(s) 374, 1469
HspAI GCGC 1 cut(s) 1262
Ksp22I TGATCA 2 cut(s) 814, 1380
Kzo9I GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
LmnI GCTCC 1 cut(s) 841
Lsp1109I GCAGC 2 cut(s) 107, 555
LweI GCATC 5 cut(s) 122, 393, 493, 655, 660
MabI ACCWGGT 1 cut(s) 1113
MaeI CTAG 2 cut(s) 554, 1519
MaeII ACGT 2 cut(s) 747, 858
MaeIII GTNAC 5 cut(s) 58, 308, 624, 1133, 1155
MalI GATC 6 cut(s) 354, 486, 816, 961, 1005, 1382
MboI GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
MboII GAAGA 9 cut(s) 215, 283, 392, 399, 521, 679, 710, 953, 1337
MfeI CAATTG 1 cut(s) 1106
MflI RGATCY 1 cut(s) 959
MhlI GDGCHC 1 cut(s) 1284
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 251, 425
MseI TTAA 6 cut(s) 330, 438, 831, 893, 1245, 1392
MslI CAYNNNNRTG 1 cut(s) 501
MspI CCGG 2 cut(s) 82, 1234
MspR9I CCNGG 4 cut(s) 82, 83, 1115, 1404
MunI CAATTG 1 cut(s) 1106
MvaI CCWGG 2 cut(s) 1115, 1404
MwoI GCNNNNNNNGC 3 cut(s) 92, 341, 1007
NciI CCSGG 2 cut(s) 82, 83
NdeI CATATG 2 cut(s) 278, 1214
NdeII GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
NlaIII CATG 2 cut(s) 374, 1469
NmuCI GTSAC 3 cut(s) 58, 308, 624
PaeR7I CTCGAG 1 cut(s) 983
PagI TCATGA 1 cut(s) 370
PfeI GAWTC 3 cut(s) 848, 1308, 1399
PkrI GCNGC 3 cut(s) 97, 570, 1266
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 1113, 1402
PspGI CCWGG 2 cut(s) 1113, 1402
PspPI GGNCC 2 cut(s) 84, 246
PstI CTGCAG 1 cut(s) 967
PsuI RGATCY 1 cut(s) 959
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 6 cut(s) 330, 438, 831, 893, 1245, 1392
SatI GCNGC 3 cut(s) 96, 569, 1265
Sau3AI GATC 6 cut(s) 352, 484, 814, 959, 1003, 1380
Sau96I GGNCC 2 cut(s) 84, 246
ScaI AGTACT 1 cut(s) 1242
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 4 cut(s) 82, 83, 1115, 1404
SduI GDGCHC 1 cut(s) 1284
SexAI ACCWGGT 1 cut(s) 1113
SfaNI GCATC 5 cut(s) 122, 393, 493, 655, 660
SfcI CTRYAG 1 cut(s) 963
Sfr274I CTCGAG 1 cut(s) 983
SinI GGWCC 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 983
SmaI CCCGGG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 3 cut(s) 620, 983, 1286
SmoI CTYRAG 3 cut(s) 620, 983, 1286
SsiI CCGC 3 cut(s) 1131, 1265, 1321
SspI AATATT 1 cut(s) 728
SspMI CTAG 2 cut(s) 554, 1519
StyD4I CCNGG 4 cut(s) 80, 81, 1113, 1402
TaaI ACNGT 5 cut(s) 253, 429, 948, 1300, 1443
TaiI ACGT 2 cut(s) 750, 861
TaqI TCGA 4 cut(s) 417, 423, 984, 1458
TatI WGTACW 3 cut(s) 358, 691, 1240
TauI GCSGC 1 cut(s) 1267
TfiI GAWTC 3 cut(s) 848, 1308, 1399
Tru1I TTAA 6 cut(s) 330, 438, 831, 893, 1245, 1392
Tru9I TTAA 6 cut(s) 330, 438, 831, 893, 1245, 1392
TscAI CASTG 4 cut(s) 460, 669, 1303, 1515
TseFI GTSAC 3 cut(s) 58, 308, 624
TseI GCWGC 2 cut(s) 95, 568
Tsp45I GTSAC 3 cut(s) 58, 308, 624
TspDTI ATGAA 4 cut(s) 60, 207, 392, 1236
TspGWI ACGGA 3 cut(s) 277, 898, 1320
TspMI CCCGGG 1 cut(s) 81
TspRI CASTG 4 cut(s) 460, 669, 1303, 1515
VneI GTGCAC 1 cut(s) 1280
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 4 cut(s) 392, 781, 904, 1434
XhoI CTCGAG 1 cut(s) 983
XmaI CCCGGG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 1227
XspI CTAG 2 cut(s) 554, 1519
ZraI GACGTC 1 cut(s) 859
ZrmI AGTACT 1 cut(s) 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.