F-box FBD LRR-repeat protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1244, 1874 |
| Acc65I | GGTACC | 1 cut(s) | 995 |
| AccB1I | GGYRCC | 1 cut(s) | 995 |
| AccI | GTMKAC | 2 cut(s) | 491, 1455 |
| AciI | CCGC | 8 cut(s) | 19, 54, 76, 102, 851, 1445, 1706, 1843 |
| AclWI | GGATC | 8 cut(s) | 224, 237, 773, 792, 843, 1600, 1630, 1855 |
| AcoI | YGGCCR | 1 cut(s) | 1878 |
| AcuI | CTGAAG | 2 cut(s) | 824, 1482 |
| AdeI | CACNNNGTG | 1 cut(s) | 1802 |
| AfaI | GTAC | 4 cut(s) | 125, 702, 831, 997 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 145, 239, 1439 |
| AflIII | ACRYGT | 1 cut(s) | 826 |
| AgsI | TTSAA | 5 cut(s) | 1127, 1239, 1408, 1674, 1835 |
| AhlI | ACTAGT | 1 cut(s) | 1019 |
| AjnI | CCWGG | 2 cut(s) | 1506, 1863 |
| AluBI | AGCT | 7 cut(s) | 212, 273, 1130, 1271, 1292, 1648, 1742 |
| AluI | AGCT | 7 cut(s) | 212, 273, 1130, 1271, 1292, 1648, 1742 |
| Alw21I | GWGCWC | 1 cut(s) | 1030 |
| Alw26I | GTCTC | 3 cut(s) | 2, 1389, 1478 |
| AlwI | GGATC | 8 cut(s) | 224, 237, 773, 792, 843, 1600, 1630, 1855 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 647 |
| Ama87I | CYCGRG | 2 cut(s) | 1029, 1459 |
| AoxI | GGCC | 4 cut(s) | 483, 869, 1576, 1878 |
| ApeKI | GCWGC | 5 cut(s) | 341, 392, 395, 1492, 1703 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 681, 1131 |
| Asp718I | GGTACC | 1 cut(s) | 995 |
| AspLEI | GCGC | 1 cut(s) | 388 |
| AspS9I | GGNCC | 2 cut(s) | 37, 870 |
| AsuC2I | CCSGG | 6 cut(s) | 240, 452, 487, 756, 1460, 1461 |
| AsuHPI | GGTGA | 4 cut(s) | 229, 1089, 1726, 1814 |
| AsuII | TTCGAA | 1 cut(s) | 380 |
| AsuNHI | GCTAGC | 1 cut(s) | 455 |
| AvaI | CYCGRG | 2 cut(s) | 1029, 1459 |
| AvaII | GGWCC | 1 cut(s) | 37 |
| AxyI | CCTNAGG | 1 cut(s) | 1519 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 684, 684, 717, 717 |
| BalI | TGGCCA | 1 cut(s) | 1880 |
| BamHI | GGATCC | 1 cut(s) | 229 |
| BanI | GGYRCC | 1 cut(s) | 995 |
| BanII | GRGCYC | 1 cut(s) | 333 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 822, 854 |
| BauI | CACGAG | 1 cut(s) | 672 |
| BbsI | GAAGAC | 1 cut(s) | 1623 |
| Bbv12I | GWGCWC | 1 cut(s) | 1030 |
| BbvI | GCAGC | 5 cut(s) | 328, 379, 382, 1479, 1715 |
| BccI | CCATC | 6 cut(s) | 44, 739, 1412, 1492, 1597, 1607 |
| BceAI | ACGGC | 1 cut(s) | 1202 |
| BciT130I | CCWGG | 2 cut(s) | 1508, 1865 |
| BciVI | GTATCC | 1 cut(s) | 847 |
| BclI | TGATCA | 2 cut(s) | 183, 1528 |
| BcnI | CCSGG | 6 cut(s) | 240, 452, 487, 756, 1460, 1461 |
| BcoDI | GTCTC | 3 cut(s) | 2, 1389, 1478 |
| BcuI | ACTAGT | 1 cut(s) | 1019 |
| BfaI | CTAG | 4 cut(s) | 456, 795, 1020, 1572 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfuI | GTATCC | 1 cut(s) | 847 |
| BglII | AGATCT | 1 cut(s) | 1345 |
| BisI | GCNGC | 5 cut(s) | 342, 393, 396, 1493, 1704 |
| BlsI | GCNGC | 5 cut(s) | 343, 394, 397, 1494, 1705 |
| Bme1390I | CCNGG | 8 cut(s) | 240, 452, 487, 756, 1460, 1461, 1508, 1865 |
| Bme18I | GGWCC | 1 cut(s) | 37 |
| BmeT110I | CYCGRG | 2 cut(s) | 1029, 1459 |
| BmgT120I | GGNCC | 2 cut(s) | 37, 870 |
| BmiI | GGNNCC | 5 cut(s) | 38, 231, 330, 997, 1391 |
| BmrFI | CCNGG | 8 cut(s) | 240, 452, 487, 756, 1460, 1461, 1508, 1865 |
| BmsI | GCATC | 5 cut(s) | 340, 538, 1354, 1551, 1674 |
| BmtI | GCTAGC | 1 cut(s) | 459 |
| BpiI | GAAGAC | 1 cut(s) | 1623 |
| BpmI | CTGGAG | 1 cut(s) | 420 |
| Bpu10I | CCTNAGC | 1 cut(s) | 213 |
| Bpu14I | TTCGAA | 1 cut(s) | 380 |
| BpuEI | CTTGAG | 1 cut(s) | 1700 |
| BpuMI | CCSGG | 6 cut(s) | 240, 452, 487, 756, 1460, 1461 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1591 |
| BsaI | GGTCTC | 1 cut(s) | 1478 |
| BsaJI | CCNNGG | 4 cut(s) | 1050, 1116, 1459, 1506 |
| BsaWI | WCCGGW | 2 cut(s) | 703, 1099 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 320, 350, 795, 825 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 145, 239, 1439 |
| Bse1I | ACTGG | 2 cut(s) | 460, 1474 |
| Bse21I | CCTNAGG | 1 cut(s) | 1519 |
| Bse3DI | GCAATG | 3 cut(s) | 582, 917, 1773 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1591 |
| BseBI | CCWGG | 2 cut(s) | 1508, 1865 |
| BseDI | CCNNGG | 4 cut(s) | 1050, 1116, 1459, 1506 |
| BseGI | GGATG | 7 cut(s) | 84, 355, 1060, 1108, 1275, 1566, 1640 |
| BseJI | GATNNNNATC | 1 cut(s) | 1591 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 145, 239, 1439 |
| BseMI | GCAATG | 3 cut(s) | 582, 917, 1773 |
| BseMII | CTCAG | 3 cut(s) | 497, 918, 1363 |
| BseNI | ACTGG | 2 cut(s) | 460, 1474 |
| BseRI | GAGGAG | 3 cut(s) | 305, 523, 944 |
| BseXI | GCAGC | 5 cut(s) | 328, 379, 382, 1479, 1715 |
| BseYI | CCCAGC | 1 cut(s) | 716 |
| BsgI | GTGCAG | 2 cut(s) | 327, 654 |
| BshFI | GGCC | 4 cut(s) | 485, 871, 1578, 1880 |
| BshNI | GGYRCC | 1 cut(s) | 995 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1030 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1029, 1459 |
| BsiSI | CCGG | 7 cut(s) | 239, 452, 486, 704, 755, 1100, 1460 |
| BslFI | GGGAC | 2 cut(s) | 50, 434 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 145, 239, 1439 |
| BsmAI | GTCTC | 3 cut(s) | 2, 1389, 1478 |
| BsmBI | CGTCTC | 2 cut(s) | 2, 1389 |
| BsmFI | GGGAC | 2 cut(s) | 50, 434 |
| BsmI | GAATGC | 3 cut(s) | 367, 388, 868 |
| BsnI | GGCC | 4 cut(s) | 485, 871, 1578, 1880 |
| Bso31I | GGTCTC | 1 cut(s) | 1478 |
| BsoBI | CYCGRG | 2 cut(s) | 1029, 1459 |
| Bsp119I | TTCGAA | 1 cut(s) | 380 |
| Bsp1286I | GDGCHC | 2 cut(s) | 333, 1030 |
| Bsp1407I | TGTACA | 2 cut(s) | 123, 829 |
| Bsp19I | CCATGG | 1 cut(s) | 1116 |
| BspACI | CCGC | 8 cut(s) | 19, 54, 76, 102, 851, 1445, 1706, 1843 |
| BspANI | GGCC | 4 cut(s) | 485, 871, 1578, 1880 |
| BspCNI | CTCAG | 3 cut(s) | 498, 919, 1362 |
| BspLI | GGNNCC | 5 cut(s) | 38, 231, 330, 997, 1391 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspOI | GCTAGC | 1 cut(s) | 459 |
| BspPI | GGATC | 8 cut(s) | 224, 237, 773, 792, 843, 1600, 1630, 1855 |
| BspQI | GCTCTTC | 1 cut(s) | 894 |
| BspT104I | TTCGAA | 1 cut(s) | 380 |
| BspT107I | GGYRCC | 1 cut(s) | 995 |
| BspTNI | GGTCTC | 1 cut(s) | 1478 |
| BsrDI | GCAATG | 3 cut(s) | 582, 917, 1773 |
| BsrGI | TGTACA | 2 cut(s) | 123, 829 |
| BsrI | ACTGG | 2 cut(s) | 460, 1474 |
| BssECI | CCNNGG | 4 cut(s) | 1050, 1116, 1459, 1506 |
| BssNAI | GTATAC | 1 cut(s) | 1456 |
| BssSI | CACGAG | 1 cut(s) | 672 |
| BssT1I | CCWWGG | 2 cut(s) | 1050, 1116 |
| Bst1107I | GTATAC | 1 cut(s) | 1456 |
| Bst2BI | CACGAG | 1 cut(s) | 672 |
| Bst2UI | CCWGG | 2 cut(s) | 1508, 1865 |
| Bst4CI | ACNGT | 4 cut(s) | 700, 1061, 1081, 1831 |
| Bst6I | CTCTTC | 5 cut(s) | 65, 164, 426, 894, 1253 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 350, 548, 638, 647 |
| BstAUI | TGTACA | 2 cut(s) | 123, 829 |
| BstBI | TTCGAA | 1 cut(s) | 380 |
| BstC8I | GCNNGC | 2 cut(s) | 390, 457 |
| BstDEI | CTNAG | 6 cut(s) | 213, 506, 927, 1349, 1385, 1519 |
| BstDSI | CCRYGG | 1 cut(s) | 1116 |
| BstF5I | GGATG | 7 cut(s) | 84, 355, 1060, 1108, 1275, 1566, 1640 |
| BstHHI | GCGC | 1 cut(s) | 388 |
| BstMAI | GTCTC | 3 cut(s) | 2, 1389, 1478 |
| BstNI | CCWGG | 2 cut(s) | 1508, 1865 |
| BstNSI | RCATGY | 1 cut(s) | 830 |
| BstSCI | CCNGG | 8 cut(s) | 238, 450, 485, 754, 1458, 1459, 1506, 1863 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 5 cut(s) | 328, 379, 382, 1479, 1715 |
| BstV2I | GAAGAC | 1 cut(s) | 1623 |
| BstX2I | RGATCY | 6 cut(s) | 229, 778, 797, 835, 1345, 1592 |
| BstYI | RGATCY | 6 cut(s) | 229, 778, 797, 835, 1345, 1592 |
| BstZ17I | GTATAC | 1 cut(s) | 1456 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1519 |
| BsuI | GTATCC | 1 cut(s) | 847 |
| BsuRI | GGCC | 4 cut(s) | 485, 871, 1578, 1880 |
| BtgI | CCRYGG | 1 cut(s) | 1116 |
| BtsCI | GGATG | 7 cut(s) | 84, 355, 1060, 1108, 1275, 1566, 1640 |
| BtsI | GCAGTG | 2 cut(s) | 537, 627 |
| BtsIMutI | CAGTG | 7 cut(s) | 467, 537, 627, 916, 1077, 1467, 1632 |
| Cac8I | GCNNGC | 2 cut(s) | 390, 457 |
| CaiI | CAGNNNCTG | 1 cut(s) | 647 |
| CfoI | GCGC | 1 cut(s) | 388 |
| Cfr13I | GGNCC | 2 cut(s) | 37, 870 |
| Cfr9I | CCCGGG | 1 cut(s) | 1459 |
| CseI | GACGC | 1 cut(s) | 1322 |
| Csp6I | GTAC | 4 cut(s) | 124, 701, 830, 996 |
| CviAII | CATG | 4 cut(s) | 570, 827, 867, 1117 |
| CviQI | GTAC | 4 cut(s) | 124, 701, 830, 996 |
| DdeI | CTNAG | 6 cut(s) | 213, 506, 927, 1349, 1385, 1519 |
| DraI | TTTAAA | 1 cut(s) | 361 |
| DraIII | CACNNNGTG | 1 cut(s) | 1802 |
| EaeI | YGGCCR | 1 cut(s) | 1878 |
| Eam1104I | CTCTTC | 5 cut(s) | 65, 164, 426, 894, 1253 |
| EarI | CTCTTC | 5 cut(s) | 65, 164, 426, 894, 1253 |
| EciI | GGCGGA | 1 cut(s) | 91 |
| Eco130I | CCWWGG | 2 cut(s) | 1050, 1116 |
| Eco24I | GRGCYC | 1 cut(s) | 333 |
| Eco31I | GGTCTC | 1 cut(s) | 1478 |
| Eco32I | GATATC | 1 cut(s) | 1758 |
| Eco47I | GGWCC | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 2 cut(s) | 824, 1482 |
| Eco81I | CCTNAGG | 1 cut(s) | 1519 |
| Eco88I | CYCGRG | 2 cut(s) | 1029, 1459 |
| EcoRII | CCWGG | 2 cut(s) | 1506, 1863 |
| EcoRV | GATATC | 1 cut(s) | 1758 |
| EcoT14I | CCWWGG | 2 cut(s) | 1050, 1116 |
| EcoT22I | ATGCAT | 1 cut(s) | 868 |
| EcoT38I | GRGCYC | 1 cut(s) | 333 |
| ErhI | CCWWGG | 2 cut(s) | 1050, 1116 |
| Esp3I | CGTCTC | 2 cut(s) | 2, 1389 |
| FaeI | CATG | 4 cut(s) | 573, 830, 870, 1120 |
| FaqI | GGGAC | 2 cut(s) | 50, 434 |
| FatI | CATG | 4 cut(s) | 569, 826, 866, 1116 |
| FauI | CCCGC | 2 cut(s) | 47, 1699 |
| FbaI | TGATCA | 2 cut(s) | 183, 1528 |
| FblI | GTMKAC | 2 cut(s) | 491, 1455 |
| Fnu4HI | GCNGC | 5 cut(s) | 342, 393, 396, 1493, 1704 |
| FokI | GGATG | 7 cut(s) | 91, 362, 1067, 1115, 1262, 1573, 1627 |
| FriOI | GRGCYC | 1 cut(s) | 333 |
| Fsp4HI | GCNGC | 5 cut(s) | 342, 393, 396, 1493, 1704 |
| FspBI | CTAG | 4 cut(s) | 456, 795, 1020, 1572 |
| GlaI | GCGC | 1 cut(s) | 387 |
| GluI | GCNGC | 5 cut(s) | 342, 393, 396, 1493, 1704 |
| GsaI | CCCAGC | 1 cut(s) | 720 |
| GsuI | CTGGAG | 1 cut(s) | 420 |
| HaeIII | GGCC | 4 cut(s) | 485, 871, 1578, 1880 |
| HapII | CCGG | 7 cut(s) | 239, 452, 486, 704, 755, 1100, 1460 |
| HgaI | GACGC | 1 cut(s) | 1322 |
| HhaI | GCGC | 1 cut(s) | 388 |
| Hin1II | CATG | 4 cut(s) | 573, 830, 870, 1120 |
| Hin6I | GCGC | 1 cut(s) | 386 |
| HinP1I | GCGC | 1 cut(s) | 386 |
| HincII | GTYRAC | 2 cut(s) | 492, 1171 |
| HindII | GTYRAC | 2 cut(s) | 492, 1171 |
| HinfI | GANTC | 8 cut(s) | 130, 404, 442, 611, 682, 1094, 1448, 1784 |
| HpaII | CCGG | 7 cut(s) | 239, 452, 486, 704, 755, 1100, 1460 |
| HphI | GGTGA | 4 cut(s) | 229, 1089, 1726, 1814 |
| Hpy166II | GTNNAC | 4 cut(s) | 124, 492, 1171, 1456 |
| Hpy188III | TCNNGA | 4 cut(s) | 689, 795, 1405, 1761 |
| Hpy8I | GTNNAC | 4 cut(s) | 124, 492, 1171, 1456 |
| Hpy99I | CGWCG | 1 cut(s) | 113 |
| HpyAV | CCTTC | 7 cut(s) | 214, 411, 475, 801, 966, 1506, 1680 |
| HpyCH4III | ACNGT | 4 cut(s) | 700, 1061, 1081, 1831 |
| HpyF3I | CTNAG | 6 cut(s) | 213, 506, 927, 1349, 1385, 1519 |
| Hsp92II | CATG | 4 cut(s) | 573, 830, 870, 1120 |
| HspAI | GCGC | 1 cut(s) | 386 |
| KpnI | GGTACC | 1 cut(s) | 999 |
| Ksp22I | TGATCA | 2 cut(s) | 183, 1528 |
| LguI | GCTCTTC | 1 cut(s) | 894 |
| LmnI | GCTCC | 5 cut(s) | 328, 510, 1395, 1519, 1763 |
| Lsp1109I | GCAGC | 5 cut(s) | 328, 379, 382, 1479, 1715 |
| LweI | GCATC | 5 cut(s) | 340, 538, 1354, 1551, 1674 |
| MaeI | CTAG | 4 cut(s) | 456, 795, 1020, 1572 |
| MaeIII | GTNAC | 3 cut(s) | 535, 1081, 1095 |
| MflI | RGATCY | 6 cut(s) | 229, 778, 797, 835, 1345, 1592 |
| MhlI | GDGCHC | 2 cut(s) | 333, 1030 |
| MlsI | TGGCCA | 1 cut(s) | 1880 |
| MluCI | AATT | 3 cut(s) | 187, 726, 1239 |
| MluNI | TGGCCA | 1 cut(s) | 1880 |
| MlyI | GAGTC | 3 cut(s) | 1103, 1457, 1793 |
| Mox20I | TGGCCA | 1 cut(s) | 1880 |
| Mph1103I | ATGCAT | 1 cut(s) | 868 |
| MroXI | GAANNNNTTC | 2 cut(s) | 681, 1131 |
| MscI | TGGCCA | 1 cut(s) | 1880 |
| MseI | TTAA | 3 cut(s) | 360, 531, 1002 |
| MslI | CAYNNNNRTG | 2 cut(s) | 568, 570 |
| Msp20I | TGGCCA | 1 cut(s) | 1880 |
| MspA1I | CMGCKG | 1 cut(s) | 1706 |
| MspI | CCGG | 7 cut(s) | 239, 452, 486, 704, 755, 1100, 1460 |
| MspR9I | CCNGG | 8 cut(s) | 240, 452, 487, 756, 1460, 1461, 1508, 1865 |
| Mva1269I | GAATGC | 3 cut(s) | 367, 388, 868 |
| MvaI | CCWGG | 2 cut(s) | 1508, 1865 |
| NciI | CCSGG | 6 cut(s) | 240, 452, 487, 756, 1460, 1461 |
| NcoI | CCATGG | 1 cut(s) | 1116 |
| NheI | GCTAGC | 1 cut(s) | 455 |
| NlaIII | CATG | 4 cut(s) | 573, 830, 870, 1120 |
| NlaIV | GGNNCC | 5 cut(s) | 38, 231, 330, 997, 1391 |
| NmuCI | GTSAC | 2 cut(s) | 535, 1095 |
| NsiI | ATGCAT | 1 cut(s) | 868 |
| NspI | RCATGY | 1 cut(s) | 830 |
| NspV | TTCGAA | 1 cut(s) | 380 |
| PaeR7I | CTCGAG | 1 cut(s) | 1029 |
| PciI | ACATGT | 1 cut(s) | 826 |
| PciSI | GCTCTTC | 1 cut(s) | 894 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 740, 1804 |
| PctI | GAATGC | 3 cut(s) | 367, 388, 868 |
| PdmI | GAANNNNTTC | 2 cut(s) | 681, 1131 |
| PfeI | GAWTC | 5 cut(s) | 130, 404, 442, 611, 682 |
| PflFI | GACNNNGTC | 1 cut(s) | 1400 |
| PkrI | GCNGC | 5 cut(s) | 343, 394, 397, 1494, 1705 |
| PleI | GAGTC | 3 cut(s) | 1102, 1456, 1792 |
| PpsI | GAGTC | 3 cut(s) | 1102, 1456, 1792 |
| PscI | ACATGT | 1 cut(s) | 826 |
| PsiI | TTATAA | 2 cut(s) | 1244, 1874 |
| Psp6I | CCWGG | 2 cut(s) | 1506, 1863 |
| PspFI | CCCAGC | 1 cut(s) | 716 |
| PspGI | CCWGG | 2 cut(s) | 1506, 1863 |
| PspN4I | GGNNCC | 5 cut(s) | 38, 231, 330, 997, 1391 |
| PspPI | GGNCC | 2 cut(s) | 37, 870 |
| PspXI | VCTCGAGB | 1 cut(s) | 1029 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PstNI | CAGNNNCTG | 1 cut(s) | 647 |
| PsuI | RGATCY | 6 cut(s) | 229, 778, 797, 835, 1345, 1592 |
| PsyI | GACNNNGTC | 1 cut(s) | 1400 |
| RsaI | GTAC | 4 cut(s) | 125, 702, 831, 997 |
| RsaNI | GTAC | 4 cut(s) | 124, 701, 830, 996 |
| RseI | CAYNNNNRTG | 2 cut(s) | 568, 570 |
| SalI | GTCGAC | 1 cut(s) | 490 |
| SapI | GCTCTTC | 1 cut(s) | 894 |
| SaqAI | TTAA | 3 cut(s) | 360, 531, 1002 |
| SatI | GCNGC | 5 cut(s) | 342, 393, 396, 1493, 1704 |
| Sau96I | GGNCC | 2 cut(s) | 37, 870 |
| SchI | GAGTC | 3 cut(s) | 1103, 1457, 1793 |
| ScrFI | CCNGG | 8 cut(s) | 240, 452, 487, 756, 1460, 1461, 1508, 1865 |
| SduI | GDGCHC | 2 cut(s) | 333, 1030 |
| SfaNI | GCATC | 5 cut(s) | 340, 538, 1354, 1551, 1674 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| Sfr274I | CTCGAG | 1 cut(s) | 1029 |
| SfuI | TTCGAA | 1 cut(s) | 380 |
| SinI | GGWCC | 1 cut(s) | 37 |
| SlaI | CTCGAG | 1 cut(s) | 1029 |
| SmaI | CCCGGG | 1 cut(s) | 1461 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 568, 570 |
| SmlI | CTYRAG | 2 cut(s) | 1029, 1679 |
| SmoI | CTYRAG | 2 cut(s) | 1029, 1679 |
| SpeI | ACTAGT | 1 cut(s) | 1019 |
| Sse9I | AATT | 3 cut(s) | 187, 726, 1239 |
| SsiI | CCGC | 8 cut(s) | 19, 54, 76, 102, 851, 1445, 1706, 1843 |
| SspI | AATATT | 1 cut(s) | 529 |
| SspMI | CTAG | 4 cut(s) | 456, 795, 1020, 1572 |
| StyD4I | CCNGG | 8 cut(s) | 238, 450, 485, 754, 1458, 1459, 1506, 1863 |
| StyI | CCWWGG | 2 cut(s) | 1050, 1116 |
| TaaI | ACNGT | 4 cut(s) | 700, 1061, 1081, 1831 |
| TaqI | TCGA | 4 cut(s) | 191, 380, 491, 1030 |
| TaqII | GACCGA | 1 cut(s) | 54 |
| TasI | AATT | 3 cut(s) | 187, 726, 1239 |
| TatI | WGTACW | 2 cut(s) | 123, 829 |
| TfiI | GAWTC | 5 cut(s) | 130, 404, 442, 611, 682 |
| Tru1I | TTAA | 3 cut(s) | 360, 531, 1002 |
| Tru9I | TTAA | 3 cut(s) | 360, 531, 1002 |
| TscAI | CASTG | 7 cut(s) | 467, 544, 627, 916, 1084, 1474, 1632 |
| TseFI | GTSAC | 2 cut(s) | 535, 1095 |
| TseI | GCWGC | 5 cut(s) | 341, 392, 395, 1492, 1703 |
| Tsp45I | GTSAC | 2 cut(s) | 535, 1095 |
| TspDTI | ATGAA | 9 cut(s) | 95, 558, 870, 1124, 1176, 1263, 1338, 1623, 1629 |
| TspGWI | ACGGA | 4 cut(s) | 1188, 1268, 1270, 1635 |
| TspMI | CCCGGG | 1 cut(s) | 1459 |
| TspRI | CASTG | 7 cut(s) | 467, 544, 627, 916, 1084, 1474, 1632 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1400 |
| VpaK11BI | GGWCC | 1 cut(s) | 37 |
| XbaI | TCTAGA | 1 cut(s) | 794 |
| XceI | RCATGY | 1 cut(s) | 830 |
| XhoI | CTCGAG | 1 cut(s) | 1029 |
| XmaI | CCCGGG | 1 cut(s) | 1459 |
| XmiI | GTMKAC | 2 cut(s) | 491, 1455 |
| XmnI | GAANNNNTTC | 2 cut(s) | 681, 1131 |
| XspI | CTAG | 4 cut(s) | 456, 795, 1020, 1572 |
| Zsp2I | ATGCAT | 1 cut(s) | 868 |