Rorug07G0301700

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000062
Physical Location & Seq
Forward (+)
29946264 .. 29953856
7593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0301700.1

Sequence Viewer

Length: 2850 bp
ATGGTGAAGTCGTACTTGCGATACGAGCAGGGTGCCGCCTTCGGCGTGATAGTTTCTGGCAATTCAAACATCGCCTACGACAGTTCCGGGAAGCACATTTTTGCCCCGGGCCTGGAAAAGGTGGTCGTGTGGAACGTGCGACAAGGCATTTGCATCAAAACCTTAACTCCTTGTGCTGCTGATGGATATTCGCCGCCAGTCACCTCCATCGCGGTCTCGCCTTCTTCTTCTTCTCTGATAGCCACTGGGTATGGAGATGGGAGCATTAGAATTTGGGACTCTCAGAATAAAATTTGTGAGACCACATTCTACGGTCATACGGGGGCCGTTAGTGTCTTACGGTACAACAAAATTGGAGATAGGCTGGTTTCTGGTGGCCAAGATAAGGACATTATATTGTGGGATGTGGAGAGGGGCGAGGGCATCTATCGTCTCCGCGGGCATGGGAATCAGGTCACTGACCTCGTCTTCTTGGACCGTTGTAAGAAACTCGTTAGTTCCTCAAAAGACAAATTTTTGAAGGTCTGGGATCTTGAAACCCCCCATTGCATGCAGACAATAAGTGACCACCATAGTGAAATTTGGTCCATAGATATCGATCCGGAAGAAAGATATTTGGTCTCTGGCTCTGCTGACTTGGAACTTAGGTTTTACACAATTAAGCATGACCTTGAAGCTTGCCAATCCACTTCTAATGCGAATGCAAATGGAACAGACTCTGGAGATCCATCCCCTCATAATAAATGGCAAGTTTTGAAGCTGTTTGGTGAATATCAGCGAAAAAGCAAGAACAGAGTTGCAACTGTGAGATTCAACAAGTCTGGAAATTTGCTGGCATGTCAAGAGGCAGGAAAGGCGGTACATATATTCAACGTACTGGATGAGGCTGAATCTACCCGTAAAGCAAACCGCAGGATTCGCCGGATCAAAAAGAAAAAGTCTGCCCAAGGGGAAGCTGAGGTGATGAAGGATGATGGAGCTGGGGAAGAGGGAAAGAGGCACGTGGTCATGGTCTCTGATGTTTTTCAACTTTTCCAAACTATTCGACCTGGCAAAAAGATATGTTCCATCTCTTTTTGTCCAAACCCTCCCAAGACTTCCCTAGCCACAATAGCTTTGTCTCTGAGCGATAATCTATGCGTGTTTTATTCTCTTGAGAACGAAGCAACAAAACAAACACGCGCTATAGACCTTCACGGCCACCGATCATCTGTCACAAGTGTAGCGCTTAGCTCAGACAGCACAGTTTTGATGTCAACCAGTCATAGTGCAGCAAAGATCTGGAATCCAACTAATGGTTACTGCCTTGGAACTATTGACACAGGTTTCGGCATGTGTGCTTTTATCCTTCCTTCTTGCAATAACAAGTTTGCACTTGTTGGAACCAAGGGTGGAACAATGGAAATTATTGACGTTGGGAGTGCAACTGTCACTGAAGTAGTAGAAGCTCATGGTGGCTCTGTTCAGTCTATTGCAAGAATTCCCAATGAAAATGGTTTTGTCACAGGAAGCTCAGATGGTTATGTTAAGTTCTGGGAATATGGAGTCAAAGAAGATTCTAAGCGCCTGCTGGTGTCAAATGTAAGAATGAAGGAGATGGATACTGATGTTCGTGTGGTTTCTATCAGTCCTGATGCCAAGTATCTTTTGGTGGCGTTGGATACCATAGTAAAGGTATTCTATATGGATTCACTCAAACTTTTCGTCACCTTATATGGTCACAAGCTGCCAGTGCTATGTCTCGATGTCTCATCCGATGGAGAGTTGATAGTGACTGGATCTCAAGACAAAAATGTGAAGATTTGGGGGCTAGATTTTGGTGACTGCCACAAATCAATGTTTGATCATCAGAGCAGCGTTCAGCAAGTACAATTTGTGCCAAATACCCATTACTTTGTTAGTGTTGGGGATGATAAGCAAGTAAACTACTGGGATGCTGATAAATTTGAGTTGCTTTTAACTATGAAGGGACACCATGAGGGTGTTTGTTGCCTCGGTATTAGTAACCGTGGTGATTTCTTTGTCACGGGATCTCATGATCGCTCAATTCGCCGCTGGGATCGTACTGATGAGCCATTTTTCCTTGAGGAAGAGAGGGAAAAACGGGAGTTGGAAAAGATGTACGAGTCTGACTTCAAGGATGAATATGAGAACAATTTTGCACTCAAGGAAAAGATCCCTGCAGAGGGAGCTGTGGCTTTTGCTGGGAAGAAAACTAAAGAAACAATTTCTTTGACCGACTCAATTGTTGCTAAACTAGAAATAGCATGGGAAGAATCAAAGCGACGAGCCAATTATGAGGCGGAAAAAGTCAGTGGAAAGCTGGTTGCTGAGTTTCAACCAAATCCTTTTATGCTAGGGCTGTCTCCTCCTGATTATTTTCTGCATGAACTTTTGAAGGTTAAGACAAGCGATTTGGAGTCGGTGCTATTGGGGCTACCCTTCTCGGATGCCTTGAAGATTTTGTCTTTCTGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACATTGCTGCTGCAGATAAATTGTAATCAATTGATTTCCACTCCAGCTGTAAAACCAATATTGACCGGTTTAAAAGAGGTTCTGTATCCCAACTTAAAGGCAAAGAAGGATATCATTGGTTACAACCTTGCAGCAATGACTCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCAATCTCCAAGCGTGGTGTAGGTGCAGGTTGGTATGGAAAGACAGAAGAAGGTAAATGCAAAAAAGTTCGAACATGTGAACCCACGCCTGGCATGCATCGACACAGTTGGTTACAGCCCTGCAGCAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

949

Amino Acids

105.48

Weight (kDa)

7.3

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 22 - 222 2.3e-33 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 23 - 219 4.6e-29 THOC3 beta-propeller domain
Beta-prop_WDR75_1st PF23869 24 - 137 3.5e-07 WD repeat-containing protein 75 first beta-propeller
WD40_CDC20-Fz PF24807 29 - 223 1.4e-22 CDC20/Fizzy WD40 domain
Beta-prop_EML PF23409 31 - 137 2.4e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st PF25173 32 - 220 9.7e-68 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 41 - 209 1.1e-13 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 41 - 176 5.7e-12 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd PF25172 62 - 177 1.2e-14 WDR3 second beta-propeller domain
Beta-prop_SPT8 PF23798 66 - 155 1e-05 SPT8 beta propeller
WDR55 PF24796 67 - 230 9.7e-15 WDR55
Beta-prop_EML_2 PF23414 69 - 222 7.4e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_SCAP PF24017 75 - 180 8.1e-12 SCAP Beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 77 - 232 3.6e-13 CAF1B/HIR1 beta-propeller domain
Beta-prop_IFT140_1st PF23383 77 - 137 2.6e-06 IFT140 first beta-propeller
EIF3I PF24805 104 - 188 1.4e-10 EIF3I
WD40_Gbeta PF25391 105 - 227 9.2e-13 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 107 - 188 6.9e-09 WDHD1 first WD40 domain
Beta-prop_WDR41 PF25178 117 - 215 3.8e-09 WDR41
WD40_Prp19 PF24814 119 - 233 1.2e-20 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 121 - 195 3.1e-07 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 125 - 178 2.5e-06 MABP1/WDR62 second WD40 domain
EIF3I PF24805 145 - 223 3e-08 EIF3I
Beta-prop_WDR3_2nd PF25172 173 - 289 1e-07 WDR3 second beta-propeller domain
WD40_CDC20-Fz PF24807 261 - 512 1.9e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 353 - 551 5.3e-14 WDR5 beta-propeller domain
WD40_Gbeta PF25391 371 - 602 3.7e-14 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 375 - 630 3.3e-27 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 405 - 692 3.3e-110 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 449 - 635 2.1e-12 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 453 - 645 3.8e-23 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 454 - 567 3.5e-07 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 454 - 686 1.1e-21 CDC20/Fizzy WD40 domain
WDR55 PF24796 462 - 687 1e-14 WDR55
Beta-prop_EML_2 PF23414 490 - 625 4e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 497 - 689 4.3e-15 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 529 - 687 1.3e-27 WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 530 - 687 2.1e-10 MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st PF24817 533 - 693 7.5e-17 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 534 - 689 3.1e-30 WDR5 beta-propeller domain
Beta-prop_IFT122_1st PF23381 538 - 637 4.6e-07 IFT122 first beta-propeller
WD40_Gbeta PF25391 550 - 638 8.4e-08 G protein beta WD-40 repeat protein
EIF3I PF24805 551 - 633 1.1e-08 EIF3I
WD40 PF00400 568 - 602 1e-08 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 569 - 647 4.8e-06 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st PF24780 578 - 686 4.8e-09 MABP1/WDR62 first WD40 domain
Beta-prop_THOC3 PF25174 614 - 687 5.9e-11 THOC3 beta-propeller domain
EIF3I PF24805 615 - 688 2.8e-06 EIF3I
WD40_Prp19 PF24814 632 - 692 5.1e-07 Prp19 WD40 domain
WD40 PF00400 650 - 687 1.6e-07 WD domain, G-beta repeat
Utp12 PF04003 793 - 893 2.6e-16 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2732
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 1295
AccI GTMKAC 1 cut(s) 2488
AccII CGCG 3 cut(s) 212, 438, 1182
AccIII TCCGGA 1 cut(s) 601
AciI CCGC 9 cut(s) 36, 194, 212, 436, 438, 857, 910, 2053, 2303
AclWI GGATC 8 cut(s) 537, 593, 719, 932, 1786, 2038, 2067, 2170
AcoI YGGCCR 2 cut(s) 376, 1198
AcsI RAATTY 8 cut(s) 270, 291, 512, 579, 826, 1479, 1943, 2507
AcuI CTGAAG 1 cut(s) 1455
AcvI CACGTG 1 cut(s) 1003
AfaI GTAC 7 cut(s) 14, 344, 861, 876, 1869, 2065, 2123
AfeI AGCGCT 1 cut(s) 1227
AfiI CCNNNNNNNGG 7 cut(s) 112, 118, 385, 1295, 2185, 2186, 2804
AflIII ACRYGT 1 cut(s) 2789
AgeI ACCGGT 1 cut(s) 2591
AjnI CCWGG 4 cut(s) 111, 1048, 2516, 2803
AleI CACNNNNGTG 1 cut(s) 573
Alw26I GTCTC 9 cut(s) 220, 293, 437, 625, 1018, 1125, 1745, 1753, 2370
AlwI GGATC 8 cut(s) 537, 593, 719, 932, 1786, 2038, 2067, 2170
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 106
Aor13HI TCCGGA 1 cut(s) 601
Aor51HI AGCGCT 1 cut(s) 1227
AoxI GGCC 4 cut(s) 109, 324, 376, 1198
ApeKI GCWGC 8 cut(s) 176, 1271, 1726, 1854, 2533, 2536, 2657, 2838
ApoI RAATTY 8 cut(s) 270, 291, 512, 579, 826, 1479, 1943, 2507
ArsI GACNNNNNNTTYG 8 cut(s) 132, 164, 1310, 1342, 1689, 1721, 2398, 2430
AsiGI ACCGGT 1 cut(s) 2591
AspLEI GCGC 3 cut(s) 1184, 1228, 1566
AspS9I GGNCC 4 cut(s) 109, 324, 475, 585
AsuC2I CCSGG 3 cut(s) 88, 107, 108
AsuHPI GGTGA 7 cut(s) 16, 193, 779, 973, 1699, 1832, 2024
AsuII TTCGAA 1 cut(s) 2785
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 2 cut(s) 475, 585
BaeI ACNNNNGTAYC 4 cut(s) 1593, 1626, 1653, 1686
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 1003
BbsI GAAGAC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 957
BbvI GCAGC 7 cut(s) 163, 1283, 1713, 1866, 2520, 2523, 2669
BccI CCATC 9 cut(s) 176, 215, 251, 736, 968, 1076, 1511, 1591, 1751
BceAI ACGGC 2 cut(s) 311, 1213
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 4 cut(s) 113, 1050, 2518, 2805
BciVI GTATCC 3 cut(s) 1594, 1654, 2622
BclI TGATCA 1 cut(s) 1843
BcnI CCSGG 3 cut(s) 88, 107, 108
BcoDI GTCTC 9 cut(s) 220, 293, 437, 625, 1018, 1125, 1745, 1753, 2370
BfaI CTAG 4 cut(s) 1103, 1811, 2258, 2357
BfmI CTRYAG 4 cut(s) 1185, 2181, 2537, 2836
BfoI RGCGCY 2 cut(s) 1229, 1567
BfuAI ACCTGC 1 cut(s) 2732
BfuI GTATCC 3 cut(s) 1594, 1654, 2622
BglII AGATCT 1 cut(s) 1278
BlpI GCTNAGC 1 cut(s) 1229
Bme1390I CCNGG 7 cut(s) 88, 107, 108, 113, 1050, 2518, 2805
Bme18I GGWCC 2 cut(s) 475, 585
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 4 cut(s) 109, 324, 475, 585
BmiI GGNNCC 3 cut(s) 34, 325, 1384
BmrFI CCNGG 7 cut(s) 88, 107, 108, 113, 1050, 2518, 2805
BmrI ACTGGG 2 cut(s) 255, 1939
BmsI GCATC 7 cut(s) 162, 432, 1624, 1924, 2440, 2704, 2821
BmuI ACTGGG 2 cut(s) 255, 1939
BpiI GAAGAC 1 cut(s) 460
BpmI CTGGAG 2 cut(s) 741, 2553
Bpu10I CCTNAGC 1 cut(s) 957
Bpu1102I GCTNAGC 1 cut(s) 1229
Bpu14I TTCGAA 1 cut(s) 2785
BpuEI CTTGAG 4 cut(s) 1175, 1767, 2105, 2150
BpuMI CCSGG 3 cut(s) 88, 107, 108
Bsa29I ATCGAT 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 1003
BsaBI GATNNNNATC 1 cut(s) 597
BsaI GGTCTC 4 cut(s) 220, 293, 625, 1018
BsaJI CCNNGG 9 cut(s) 105, 106, 436, 946, 1306, 1386, 1993, 2008, 2517
BsaWI WCCGGW 2 cut(s) 601, 2591
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 7 cut(s) 112, 118, 385, 1295, 2185, 2186, 2804
Bse118I RCCGGY 1 cut(s) 2591
Bse1I ACTGG 7 cut(s) 197, 250, 882, 1260, 1730, 1780, 1934
Bse3DI GCAATG 3 cut(s) 544, 2528, 2667
Bse8I GATNNNNATC 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 601
BseBI CCWGG 4 cut(s) 113, 1050, 2518, 2805
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 9 cut(s) 105, 106, 436, 946, 1306, 1386, 1993, 2008, 2517
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 7 cut(s) 112, 118, 385, 1295, 2185, 2186, 2804
BseMI GCAATG 3 cut(s) 544, 2528, 2667
BseMII CTCAG 6 cut(s) 296, 948, 1115, 1248, 1527, 2322
BseNI ACTGG 7 cut(s) 197, 250, 882, 1260, 1730, 1780, 1934
BseRI GAGGAG 1 cut(s) 2358
BseXI GCAGC 7 cut(s) 163, 1283, 1713, 1866, 2520, 2523, 2669
BseYI CCCAGC 3 cut(s) 980, 2055, 2204
BsgI GTGCAG 2 cut(s) 1290, 2760
Bsh1236I CGCG 3 cut(s) 212, 438, 1182
BshFI GGCC 4 cut(s) 111, 326, 378, 1200
BshNI GGYRCC 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 2591
BshVI ATCGAT 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 5 cut(s) 87, 107, 602, 922, 2592
BslFI GGGAC 2 cut(s) 290, 1983
BslI CCNNNNNNNGG 7 cut(s) 112, 118, 385, 1295, 2185, 2186, 2804
BsmAI GTCTC 9 cut(s) 220, 293, 437, 625, 1018, 1125, 1745, 1753, 2370
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 2 cut(s) 290, 1983
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 4 cut(s) 111, 326, 378, 1200
Bso31I GGTCTC 4 cut(s) 220, 293, 625, 1018
BsoBI CYCGRG 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 2785
Bsp13I TCCGGA 1 cut(s) 601
Bsp1720I GCTNAGC 1 cut(s) 1229
BspACI CCGC 9 cut(s) 36, 194, 212, 436, 438, 857, 910, 2053, 2303
BspANI GGCC 4 cut(s) 111, 326, 378, 1200
BspCNI CTCAG 6 cut(s) 295, 949, 1116, 1247, 1526, 2323
BspDI ATCGAT 1 cut(s) 597
BspEI TCCGGA 1 cut(s) 601
BspFNI CGCG 3 cut(s) 212, 438, 1182
BspHI TCATGA 1 cut(s) 2035
BspLI GGNNCC 3 cut(s) 34, 325, 1384
BspMAI CTGCAG 3 cut(s) 2185, 2541, 2840
BspMI ACCTGC 1 cut(s) 2732
BspPI GGATC 8 cut(s) 537, 593, 719, 932, 1786, 2038, 2067, 2170
BspT104I TTCGAA 1 cut(s) 2785
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 4 cut(s) 220, 293, 625, 1018
BsrDI GCAATG 3 cut(s) 544, 2528, 2667
BsrFI RCCGGY 1 cut(s) 2591
BsrI ACTGG 7 cut(s) 197, 250, 882, 1260, 1730, 1780, 1934
BssAI RCCGGY 1 cut(s) 2591
BssECI CCNNGG 9 cut(s) 105, 106, 436, 946, 1306, 1386, 1993, 2008, 2517
BssT1I CCWWGG 3 cut(s) 946, 1306, 1386
Bst2UI CCWGG 4 cut(s) 113, 1050, 2518, 2805
Bst4CI ACNGT 9 cut(s) 83, 314, 342, 479, 805, 1246, 1429, 2009, 2822
Bst6I CTCTTC 2 cut(s) 981, 2085
BstBAI YACGTR 1 cut(s) 1003
BstBI TTCGAA 1 cut(s) 2785
BstC8I GCNNGC 6 cut(s) 440, 551, 679, 834, 1568, 2810
BstDEI CTNAG 9 cut(s) 282, 644, 957, 1124, 1229, 1234, 1513, 1560, 2331
BstDSI CCRYGG 2 cut(s) 436, 2008
BstENI CCTNNNNNAGG 1 cut(s) 116
BstFNI CGCG 3 cut(s) 212, 438, 1182
BstH2I RGCGCY 2 cut(s) 1229, 1567
BstHHI GCGC 3 cut(s) 1184, 1228, 1566
BstMAI GTCTC 9 cut(s) 220, 293, 437, 625, 1018, 1125, 1745, 1753, 2370
BstNI CCWGG 4 cut(s) 113, 1050, 2518, 2805
BstNSI RCATGY 5 cut(s) 553, 840, 1336, 2793, 2812
BstSCI CCNGG 7 cut(s) 86, 105, 106, 111, 1048, 2516, 2803
BstSFI CTRYAG 4 cut(s) 1185, 2181, 2537, 2836
BstUI CGCG 3 cut(s) 212, 438, 1182
BstV1I GCAGC 7 cut(s) 163, 1283, 1713, 1866, 2520, 2523, 2669
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 6 cut(s) 529, 724, 1278, 1778, 2030, 2175
BstYI RGATCY 6 cut(s) 529, 724, 1278, 1778, 2030, 2175
Bsu15I ATCGAT 1 cut(s) 597
BsuI GTATCC 3 cut(s) 1594, 1654, 2622
BsuRI GGCC 4 cut(s) 111, 326, 378, 1200
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 2 cut(s) 436, 2008
BtgZI GCGATG 2 cut(s) 55, 193
BtsIMutI CAGTG 5 cut(s) 243, 456, 1431, 1737, 2320
BveI ACCTGC 1 cut(s) 2732
Cac8I GCNNGC 6 cut(s) 440, 551, 679, 834, 1568, 2810
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 1 cut(s) 2035
CfoI GCGC 3 cut(s) 1184, 1228, 1566
Cfr10I RCCGGY 1 cut(s) 2591
Cfr13I GGNCC 4 cut(s) 109, 324, 475, 585
Cfr42I CCGCGG 1 cut(s) 439
Cfr9I CCCGGG 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 597
Csp6I GTAC 7 cut(s) 13, 343, 860, 875, 1868, 2064, 2122
CspAI ACCGGT 1 cut(s) 2591
CviQI GTAC 7 cut(s) 13, 343, 860, 875, 1868, 2064, 2122
DdeI CTNAG 9 cut(s) 282, 644, 957, 1124, 1229, 1234, 1513, 1560, 2331
DraI TTTAAA 1 cut(s) 2598
EaeI YGGCCR 2 cut(s) 376, 1198
Eam1104I CTCTTC 2 cut(s) 981, 2085
EarI CTCTTC 2 cut(s) 981, 2085
EciI GGCGGA 1 cut(s) 2318
Eco130I CCWWGG 3 cut(s) 946, 1306, 1386
Eco31I GGTCTC 4 cut(s) 220, 293, 625, 1018
Eco32I GATATC 2 cut(s) 595, 2638
Eco47I GGWCC 2 cut(s) 475, 585
Eco47III AGCGCT 1 cut(s) 1227
Eco57I CTGAAG 1 cut(s) 1455
Eco72I CACGTG 1 cut(s) 1003
Eco88I CYCGRG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoRI GAATTC 2 cut(s) 1479, 2507
EcoRII CCWGG 4 cut(s) 111, 1048, 2516, 2803
EcoRV GATATC 2 cut(s) 595, 2638
EcoT14I CCWWGG 3 cut(s) 946, 1306, 1386
EcoT22I ATGCAT 1 cut(s) 2814
ErhI CCWWGG 3 cut(s) 946, 1306, 1386
Esp3I CGTCTC 1 cut(s) 437
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 2 cut(s) 290, 1983
FauI CCCGC 1 cut(s) 431
FbaI TGATCA 1 cut(s) 1843
FblI GTMKAC 1 cut(s) 2488
FspBI CTAG 4 cut(s) 1103, 1811, 2258, 2357
GlaI GCGC 3 cut(s) 1183, 1227, 1565
GsaI CCCAGC 3 cut(s) 984, 2059, 2208
GsuI CTGGAG 2 cut(s) 741, 2553
HaeII RGCGCY 2 cut(s) 1229, 1567
HaeIII GGCC 4 cut(s) 111, 326, 378, 1200
HapII CCGG 5 cut(s) 87, 107, 602, 922, 2592
HhaI GCGC 3 cut(s) 1184, 1228, 1566
Hin6I GCGC 3 cut(s) 1182, 1226, 1564
HinP1I GCGC 3 cut(s) 1182, 1226, 1564
HincII GTYRAC 1 cut(s) 1257
HindII GTYRAC 1 cut(s) 1257
HindIII AAGCTT 1 cut(s) 675
HpaII CCGG 5 cut(s) 87, 107, 602, 922, 2592
HphI GGTGA 7 cut(s) 16, 193, 779, 973, 1699, 1832, 2024
Hpy166II GTNNAC 4 cut(s) 1257, 1924, 2489, 2795
Hpy8I GTNNAC 4 cut(s) 1257, 1924, 2489, 2795
Hpy99I CGWCG 1 cut(s) 2289
HpyCH4III ACNGT 9 cut(s) 83, 314, 342, 479, 805, 1246, 1429, 2009, 2822
HpyCH4IV ACGT 5 cut(s) 135, 873, 1002, 1413, 2491
HpyF3I CTNAG 9 cut(s) 282, 644, 957, 1124, 1229, 1234, 1513, 1560, 2331
HpySE526I ACGT 5 cut(s) 135, 873, 1002, 1413, 2491
HspAI GCGC 3 cut(s) 1182, 1226, 1564
Kpn2I TCCGGA 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 1843
KspI CCGCGG 1 cut(s) 439
LmnI GCTCC 3 cut(s) 261, 977, 2189
Lsp1109I GCAGC 7 cut(s) 163, 1283, 1713, 1866, 2520, 2523, 2669
LweI GCATC 7 cut(s) 162, 432, 1624, 1924, 2440, 2704, 2821
MaeI CTAG 4 cut(s) 1103, 1811, 2258, 2357
MaeII ACGT 5 cut(s) 135, 873, 1002, 1413, 2491
MfeI CAATTG 3 cut(s) 2244, 2555, 2678
MflI RGATCY 6 cut(s) 529, 724, 1278, 1778, 2030, 2175
MlsI TGGCCA 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 7 cut(s) 272, 710, 1554, 2135, 2234, 2429, 2659
MmeI TCCRAC 4 cut(s) 1313, 1360, 1638, 2091
Mox20I TGGCCA 1 cut(s) 378
Mph1103I ATGCAT 1 cut(s) 2814
MroI TCCGGA 1 cut(s) 601
MscI TGGCCA 1 cut(s) 378
MseI TTAA 7 cut(s) 164, 660, 1527, 1958, 2403, 2597, 2621
MslI CAYNNNNRTG 2 cut(s) 573, 1980
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 3 cut(s) 438, 2055, 2573
MspI CCGG 5 cut(s) 87, 107, 602, 922, 2592
MspR9I CCNGG 7 cut(s) 88, 107, 108, 113, 1050, 2518, 2805
MunI CAATTG 3 cut(s) 2244, 2555, 2678
Mva1269I GAATGC 1 cut(s) 706
MvaI CCWGG 4 cut(s) 113, 1050, 2518, 2805
MvnI CGCG 3 cut(s) 212, 438, 1182
NciI CCSGG 3 cut(s) 88, 107, 108
NlaIV GGNNCC 3 cut(s) 34, 325, 1384
NsiI ATGCAT 1 cut(s) 2814
NspI RCATGY 5 cut(s) 553, 840, 1336, 2793, 2812
NspV TTCGAA 1 cut(s) 2785
OliI CACNNNNGTG 1 cut(s) 573
PaeI GCATGC 2 cut(s) 553, 2812
PagI TCATGA 1 cut(s) 2035
PciI ACATGT 1 cut(s) 2789
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 706
PfeI GAWTC 9 cut(s) 448, 810, 890, 916, 1285, 1556, 1688, 2276, 2687
PflFI GACNNNGTC 1 cut(s) 464
PflMI CCANNNNNTGG 1 cut(s) 1295
PfoI TCCNGGA 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 2591
PleI GAGTC 7 cut(s) 272, 710, 1553, 2134, 2234, 2428, 2659
PmaCI CACGTG 1 cut(s) 1003
PmlI CACGTG 1 cut(s) 1003
PpsI GAGTC 7 cut(s) 272, 710, 1553, 2134, 2234, 2428, 2659
Ppu21I YACGTR 1 cut(s) 1003
PscI ACATGT 1 cut(s) 2789
Psp6I CCWGG 4 cut(s) 111, 1048, 2516, 2803
PspCI CACGTG 1 cut(s) 1003
PspFI CCCAGC 3 cut(s) 980, 2055, 2204
PspGI CCWGG 4 cut(s) 111, 1048, 2516, 2803
PspN4I GGNNCC 3 cut(s) 34, 325, 1384
PspPI GGNCC 4 cut(s) 109, 324, 475, 585
PstI CTGCAG 3 cut(s) 2185, 2541, 2840
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 6 cut(s) 529, 724, 1278, 1778, 2030, 2175
PsyI GACNNNGTC 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 2573
RsaI GTAC 7 cut(s) 14, 344, 861, 876, 1869, 2065, 2123
RsaNI GTAC 7 cut(s) 13, 343, 860, 875, 1868, 2064, 2122
RseI CAYNNNNRTG 2 cut(s) 573, 1980
SacII CCGCGG 1 cut(s) 439
SaqAI TTAA 7 cut(s) 164, 660, 1527, 1958, 2403, 2597, 2621
Sau96I GGNCC 4 cut(s) 109, 324, 475, 585
SchI GAGTC 7 cut(s) 272, 710, 1554, 2135, 2234, 2429, 2659
ScrFI CCNGG 7 cut(s) 88, 107, 108, 113, 1050, 2518, 2805
SfaNI GCATC 7 cut(s) 162, 432, 1624, 1924, 2440, 2704, 2821
SfcI CTRYAG 4 cut(s) 1185, 2181, 2537, 2836
Sfr303I CCGCGG 1 cut(s) 439
SfuI TTCGAA 1 cut(s) 2785
SgrBI CCGCGG 1 cut(s) 439
SinI GGWCC 2 cut(s) 475, 585
SmaI CCCGGG 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 573, 1980
SmlI CTYRAG 4 cut(s) 1154, 1782, 2084, 2165
SmoI CTYRAG 4 cut(s) 1154, 1782, 2084, 2165
SphI GCATGC 2 cut(s) 553, 2812
SsiI CCGC 9 cut(s) 36, 194, 212, 436, 438, 857, 910, 2053, 2303
SspI AATATT 1 cut(s) 2586
SspMI CTAG 4 cut(s) 1103, 1811, 2258, 2357
StyD4I CCNGG 7 cut(s) 86, 105, 106, 111, 1048, 2516, 2803
StyI CCWWGG 3 cut(s) 946, 1306, 1386
TaaI ACNGT 9 cut(s) 83, 314, 342, 479, 805, 1246, 1429, 2009, 2822
TaiI ACGT 5 cut(s) 138, 876, 1005, 1416, 2494
TaqI TCGA 5 cut(s) 597, 1045, 1743, 2785, 2815
TaqII GACCGA 1 cut(s) 2252
TatI WGTACW 1 cut(s) 1867
TauI GCSGC 3 cut(s) 38, 196, 2055
TfiI GAWTC 9 cut(s) 448, 810, 890, 916, 1285, 1556, 1688, 2276, 2687
Tru1I TTAA 7 cut(s) 164, 660, 1527, 1958, 2403, 2597, 2621
Tru9I TTAA 7 cut(s) 164, 660, 1527, 1958, 2403, 2597, 2621
TscAI CASTG 5 cut(s) 250, 463, 1438, 1737, 2320
TseI GCWGC 8 cut(s) 176, 1271, 1726, 1854, 2533, 2536, 2657, 2838
TspDTI ATGAA 7 cut(s) 980, 1503, 1604, 1979, 2157, 2403, 2500
TspMI CCCGGG 1 cut(s) 106
TspRI CASTG 5 cut(s) 250, 463, 1438, 1737, 2320
Tth111I GACNNNGTC 1 cut(s) 464
Van91I CCANNNNNTGG 1 cut(s) 1295
VpaK11BI GGWCC 2 cut(s) 475, 585
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 8 cut(s) 270, 291, 512, 579, 826, 1479, 1943, 2507
XceI RCATGY 5 cut(s) 553, 840, 1336, 2793, 2812
XcmI CCANNNNNNNNNTGG 1 cut(s) 1645
XmaI CCCGGG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 2488
XspI CTAG 4 cut(s) 1103, 1811, 2258, 2357
Zsp2I ATGCAT 1 cut(s) 2814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.