Rh5DG201700

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
22364224 .. 22364847
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG201700.1

Sequence Viewer

Length: 624 bp
ATGGATTTGGATTCTAAGAGGCAAGCAATAGCTGAAGATAGGATCAGTGCATTACCAGATGCAATTCTATGTCACATACTTTCCTACTTTGAACCGGAATATAGAAAATGTGCTGTCCGAACCTGCATTTTGTCCAAAAGGTGGAAGAACATATGGCCTTATGTTCTCAATCTCTACTTAAACTATGAAGATTTCTCCTCCTCTGCTGATTTTATAGCGTTTGTTGACCGTGCACTTCTCATTCGTGACTCATTATCCATTCAAAAGTTTCATCTTCATTGCAACAGTTGTCAAGCTGAGGATTTCCCACGCATTGATAGTTGGATTCGCAGTGCCATCAGGTGTAAGGTTATAGAACTATATCTTTCTGTTGATTCAGATAGAGAAGATATGTTTGAGTTGCCTGAAAGCCTTTTGACTTGCGAAACACTCATGGTTTGGAAGCTCTGGTCAAATTACATTATCAAAATTCCTAAAGCAGGGTGTTACCCAAGTCTCAAGTCTTTAGATGTTGAGTTTATGCATCCTAGTCTCTTCAATCCAGATAATGATGTGATGGATTTTTCTCAGTTCCCTGCCCTTGACTTTGAGGATCAATGGATATCTTGGAATCAAAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

24.45

Weight (kDa)

4.92

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 141
AclWI GGATC 2 cut(s) 50, 600
AcsI RAATTY 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 141, 479
AgsI TTSAA 3 cut(s) 92, 263, 538
AluBI AGCT 3 cut(s) 32, 296, 445
AluI AGCT 3 cut(s) 32, 296, 445
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 500, 536
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 2 cut(s) 50, 600
AoxI GGCC 1 cut(s) 155
ApaLI GTGCAC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 468
BaeGI GKGCMC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 344, 550
BcoDI GTCTC 2 cut(s) 500, 536
BfaI CTAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 131
BmsI GCATC 2 cut(s) 49, 532
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 479
Bse3DI GCAATG 1 cut(s) 277
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 141, 479
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 288, 581
BseRI GAGGAG 2 cut(s) 187, 190
BseSI GKGCMC 1 cut(s) 235
BshFI GGCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 141, 479
BsmAI GTCTC 2 cut(s) 500, 536
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 42, 592
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 289, 580
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 50, 600
BsrDI GCAATG 1 cut(s) 277
BssMI GATC 2 cut(s) 42, 592
Bst4CI ACNGT 2 cut(s) 230, 287
Bst6I CTCTTC 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 3 cut(s) 15, 297, 567
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 523
BstKTI GATC 2 cut(s) 45, 595
BstMAI GTCTC 2 cut(s) 500, 536
BstMBI GATC 2 cut(s) 42, 592
BstSLI GKGCMC 1 cut(s) 235
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 52, 337
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 24
CviAII CATG 1 cut(s) 433
CviJI RGCY 5 cut(s) 32, 157, 296, 411, 445
CviKI_1 RGCY 5 cut(s) 32, 157, 296, 411, 445
DdeI CTNAG 3 cut(s) 15, 297, 567
DpnI GATC 2 cut(s) 44, 594
DpnII GATC 2 cut(s) 42, 592
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRV GATATC 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 525
FaeI CATG 1 cut(s) 436
FatI CATG 1 cut(s) 432
FauNDI CATATG 1 cut(s) 152
FokI GGATG 1 cut(s) 510
FspBI CTAG 1 cut(s) 528
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 436
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 5 cut(s) 11, 248, 325, 374, 610
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 226, 233
Hpy188I TCNGA 2 cut(s) 119, 379
Hpy188III TCNNGA 2 cut(s) 245, 542
Hpy8I GTNNAC 2 cut(s) 226, 233
HpyCH4III ACNGT 2 cut(s) 230, 287
HpyCH4V TGCA 6 cut(s) 50, 62, 126, 233, 282, 523
HpyF3I CTNAG 3 cut(s) 15, 297, 567
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 2 cut(s) 42, 592
LpnPI CCDG 9 cut(s) 69, 108, 136, 325, 417, 433, 465, 555, 588
LweI GCATC 2 cut(s) 49, 532
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 71, 245, 485
MalI GATC 2 cut(s) 44, 594
MboI GATC 2 cut(s) 42, 592
MboII GAAGA 6 cut(s) 47, 157, 200, 266, 398, 526
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 3 cut(s) 63, 454, 468
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 302
MnlI CCTC 5 cut(s) 12, 208, 211, 292, 583
Mph1103I ATGCAT 1 cut(s) 525
MseI TTAA 2 cut(s) 179, 622
MspI CCGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 152
NdeII GATC 2 cut(s) 42, 592
NlaIII CATG 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 71, 245
NsiI ATGCAT 1 cut(s) 525
PfeI GAWTC 4 cut(s) 11, 325, 374, 610
PflMI CCANNNNNTGG 1 cut(s) 141
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 179, 622
Sau3AI GATC 2 cut(s) 42, 592
SchI GAGTC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 34, 125, 143, 298, 344, 351, 447
SfaNI GCATC 2 cut(s) 49, 532
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 3 cut(s) 63, 454, 468
SspMI CTAG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 230, 287
TasI AATT 3 cut(s) 63, 454, 468
TfiI GAWTC 4 cut(s) 11, 325, 374, 610
Tru1I TTAA 2 cut(s) 179, 622
Tru9I TTAA 2 cut(s) 179, 622
TscAI CASTG 2 cut(s) 52, 337
TseFI GTSAC 2 cut(s) 71, 245
Tsp45I GTSAC 2 cut(s) 71, 245
TspDTI ATGAA 3 cut(s) 201, 260, 266
TspRI CASTG 2 cut(s) 52, 337
Van91I CCANNNNNTGG 1 cut(s) 141
VneI GTGCAC 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 1 cut(s) 468
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.