Rw1G003950

Annexin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000062
Physical Location & Seq
Reverse (-)
7420069 .. 7421456
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003950.1

Sequence Viewer

Length: 543 bp
ATGCAGCTCAAAGAAAAGAAATCAGGGTCGTTTATGAGCAACTTCATCAAGAAGATATTATCAAGCACCTTAAGTCTGAGCTCTCTGAGAGCAGTGTACCGTTGGACATTGGATCCAGCTGATTGTGATGCTGTTTTGGCTAATCTGGCCATCAAGAAACCCGATTGCAACTACAATGTCATCATTGAAATCTTCAGTGTTCGGTGTCCTGAAGAGCTTCTGGCTGTAAGAAAAGCTTACCAGCTTCGTTACAAGTGCTCTTTGGAAGAAGATCTAGCTCAACGTACCAATGGTGATCTCCGCAAGGTACTTCGCAAGGCGATCATAGGGACCGGGACCGATGAGGATGCTCTCACTCGTGTGATTGTTACAAGGGCAGAGGAGGACTTGAAGGACATCATGGAGGTTTACTACAAGAAGAACAGTGTTCCTCTTGAACAGGCTGTGGCTCAAGACACTTCAGGGGACTACATGACCTTCCTCCTTACTCTGTTGGGAAAGGAGGACTGGGATCCTTCGCTGAGCAAATTCGAATCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Annexin

Protein Analysis

180

Amino Acids

20.41

Weight (kDa)

5.68

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Annexin PF00191 43 - 104 1.5e-12 Annexin
Annexin PF00191 103 - 164 8.6e-17 Annexin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 301
AclWI GGATC 4 cut(s) 107, 120, 506, 519
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 3 cut(s) 178, 231, 444
AfaI GTAC 3 cut(s) 98, 286, 309
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 3 cut(s) 188, 391, 437
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 8 cut(s) 7, 81, 119, 217, 236, 244, 278, 540
AluI AGCT 8 cut(s) 7, 81, 119, 217, 236, 244, 278, 540
Alw21I GWGCWC 2 cut(s) 83, 260
AlwI GGATC 4 cut(s) 107, 120, 506, 519
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 527
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 330, 336
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 2 cut(s) 330, 336
BalI TGGCCA 1 cut(s) 149
BamHI GGATCC 2 cut(s) 112, 511
BanII GRGCYC 1 cut(s) 83
BauI CACGAG 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 83, 260
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BcnI CCSGG 1 cut(s) 334
BfaI CTAG 2 cut(s) 275, 541
BfrI CTTAAG 1 cut(s) 70
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 2 cut(s) 330, 336
BmgT120I GGNCC 2 cut(s) 330, 336
BmiI GGNNCC 4 cut(s) 114, 331, 337, 513
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 118, 337
BmuI ACTGGG 1 cut(s) 517
Bpu1102I GCTNAGC 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 512
BseGI GGATG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 68, 77, 512
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 83, 260
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 3 cut(s) 343, 349, 479
BsmFI GGGAC 3 cut(s) 343, 349, 479
BsnI GGCC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 83, 260
Bsp143I GATC 5 cut(s) 112, 271, 295, 321, 511
Bsp1720I GCTNAGC 1 cut(s) 521
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 3 cut(s) 69, 78, 513
BspLI GGNNCC 4 cut(s) 114, 331, 337, 513
BspPI GGATC 4 cut(s) 107, 120, 506, 519
BspQI GCTCTTC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 512
BssMI GATC 5 cut(s) 112, 271, 295, 321, 511
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 101, 425
Bst6I CTCTTC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 531
BstDEI CTNAG 3 cut(s) 77, 86, 521
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 5 cut(s) 115, 274, 298, 324, 514
BstMBI GATC 5 cut(s) 112, 271, 295, 321, 511
BstMWI GCNNNNNNNGC 2 cut(s) 137, 146
BstSCI CCNGG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 3 cut(s) 112, 271, 511
BstYI RGATCY 3 cut(s) 112, 271, 511
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 99, 202, 430
Cfr13I GGNCC 2 cut(s) 330, 336
Csp6I GTAC 3 cut(s) 97, 285, 308
CviAII CATG 2 cut(s) 400, 472
CviQI GTAC 3 cut(s) 97, 285, 308
DdeI CTNAG 3 cut(s) 77, 86, 521
DpnI GATC 5 cut(s) 114, 273, 297, 323, 513
DpnII GATC 5 cut(s) 112, 271, 295, 321, 511
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 330, 336
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 3 cut(s) 178, 231, 444
EcoICRI GAGCTC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 2 cut(s) 403, 475
FaiI YATR 4 cut(s) 35, 326, 401, 473
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FaqI GGGAC 3 cut(s) 343, 349, 479
FatI CATG 2 cut(s) 399, 471
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 275, 541
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 333
Hin1II CATG 2 cut(s) 403, 475
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 533
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 97, 409
Hpy188I TCNGA 2 cut(s) 78, 87
Hpy188III TCNNGA 5 cut(s) 49, 154, 209, 434, 452
Hpy8I GTNNAC 2 cut(s) 97, 409
HpyAV CCTTC 3 cut(s) 385, 487, 525
HpyCH4III ACNGT 2 cut(s) 101, 425
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 4, 168
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 146
HpyF3I CTNAG 3 cut(s) 77, 86, 521
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 2 cut(s) 403, 475
Kzo9I GATC 5 cut(s) 112, 271, 295, 321, 511
LguI GCTCTTC 1 cut(s) 207
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 118, 337
MaeI CTAG 2 cut(s) 275, 541
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 248, 367
MalI GATC 5 cut(s) 114, 273, 297, 323, 513
MboI GATC 5 cut(s) 112, 271, 295, 321, 511
MboII GAAGA 6 cut(s) 64, 184, 224, 278, 281, 430
MflI RGATCY 3 cut(s) 112, 271, 511
MhlI GDGCHC 2 cut(s) 83, 260
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 527
MluNI TGGCCA 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 7 cut(s) 337, 373, 376, 397, 441, 491, 496
Mox20I TGGCCA 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 149
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 137, 146
NciI CCSGG 1 cut(s) 334
NdeII GATC 5 cut(s) 112, 271, 295, 321, 511
NlaIII CATG 2 cut(s) 403, 475
NlaIV GGNNCC 4 cut(s) 114, 331, 337, 513
NspV TTCGAA 1 cut(s) 531
OliI CACNNNNGTG 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 533
PkrI GCNGC 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 83
PspN4I GGNNCC 4 cut(s) 114, 331, 337, 513
PspPI GGNCC 2 cut(s) 330, 336
PsuI RGATCY 3 cut(s) 112, 271, 511
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 98, 286, 309
RsaNI GTAC 3 cut(s) 97, 285, 308
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 112, 271, 295, 321, 511
Sau96I GGNCC 2 cut(s) 330, 336
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 2 cut(s) 83, 260
SfaNI GCATC 2 cut(s) 118, 337
SfuI TTCGAA 1 cut(s) 531
SinI GGWCC 2 cut(s) 330, 336
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 70, 450
SmoI CTYRAG 2 cut(s) 70, 450
Sse9I AATT 1 cut(s) 527
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 275, 541
SstI GAGCTC 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 101, 425
TaiI ACGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 531
TaqII GACCGA 1 cut(s) 353
TasI AATT 1 cut(s) 527
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 3 cut(s) 99, 202, 430
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 3 cut(s) 99, 202, 430
Vha464I CTTAAG 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 330, 336
XapI RAATTY 1 cut(s) 527
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 275, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.