FvH4_3g17060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000062
Physical Location & Seq
Forward (+)
10776975 .. 10778449
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17060.t1

Sequence Viewer

Length: 876 bp
ATGGAGAAGCTTTTCTCTTGCTGCCCTGTACTAGAAGATTTGTCCCTAAGGGCAGATATTGGAGATGCAGTTTTGAATTTCAAAGTGTCTGCACCTGAACTGAAGACATTCAGAGTAGATTTGTTTAATGCATATAAAAATGCATATGAATATCCCAGCGATGATGAAGATGAAGCTCCTGATTGCATTGATGTCTACAACTTCTTCATTAATGCCCCAAAGCTTGAAACCCTTGATATCCATACCGATATCTTGTCAAATTTCTTCTTCGAAAATTCAGAGTCACTAGTGAAAGCCAATATTGATCTCACTCACCATGATTCAAGTGAACGGCCTACTTTTGCTAAAAGTGCAACTGCACTTATGGCAGCAGTTTCCAATGTGAAGGATTTGTCTCTTTCAGCTGATTGTTTCAAGGCTCGTTATCTGCCTGCTTTTGATAATTTGAGCAAGTTGGAGCTGGTTTTTCAAGATTGCCACCACTTGGAATTGCTGTTACCAGAGTTTCTCAACAGATTACCTAAACTGGAATCTCTCATCATAAATCGTTTTGATTTTACTTGTGGAGAACATACCAATGATCGTCGTTGGAGTCAACCAAAGAAGGTGCCTATTTGTTTGCTGTCACAGCTCAAGACTATCACACTAAAGGGAGTAAGAGGAGCTCCTGAGGAAATGAAAATGGCAAAGTATCTACTAATGGCGGGTAAAGTTCTCGAAACAGTGACTGTTTCGATTACAACTGACAGGGATCTTCTTTCAGTGTATTCAACAGAGAAGGGATTACAGAAGACATTCTGTTCCTTTCAGAAGGGTTCAAAGACTTGTGTAGTCAAATTCGTCAAAGGCAAAGTTCGTAGGTTCCTAGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

292

Amino Acids

33.08

Weight (kDa)

5.93

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 199 - 243 2.9e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 607
AccB7I CCANNNNNTGG 1 cut(s) 484
AccI GTMKAC 1 cut(s) 195
AciI CCGC 1 cut(s) 704
AclWI GGATC 1 cut(s) 759
AcsI RAATTY 4 cut(s) 76, 259, 274, 836
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 8 cut(s) 76, 82, 227, 324, 415, 470, 771, 819
AhlI ACTAGT 1 cut(s) 286
AluBI AGCT 7 cut(s) 10, 176, 223, 404, 460, 631, 665
AluI AGCT 7 cut(s) 10, 176, 223, 404, 460, 631, 665
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 1 cut(s) 759
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 21, 368
ApoI RAATTY 4 cut(s) 76, 259, 274, 836
AseI ATTAAT 1 cut(s) 210
Asp700I GAANNNNTTC 3 cut(s) 11, 107, 794
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 270
AxyI CCTNAGG 2 cut(s) 47, 669
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 110, 797
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 2 cut(s) 8, 380
BceAI ACGGC 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 399
BcuI ACTAGT 1 cut(s) 286
BfaI CTAG 4 cut(s) 32, 287, 866, 874
BisI GCNGC 2 cut(s) 22, 369
BlsI GCNGC 2 cut(s) 23, 370
BmiI GGNNCC 2 cut(s) 609, 863
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 110, 797
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 531
Bse21I CCTNAGG 2 cut(s) 47, 669
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 660
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 1 cut(s) 675
BseXI GCAGC 2 cut(s) 8, 380
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 2 cut(s) 75, 342
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 667
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 334
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 3 cut(s) 304, 580, 751
BspACI CCGC 1 cut(s) 704
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 661
BspLI GGNNCC 2 cut(s) 609, 863
BspPI GGATC 1 cut(s) 759
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 607
BsrI ACTGG 1 cut(s) 531
BssMI GATC 3 cut(s) 304, 580, 751
Bst4CI ACNGT 2 cut(s) 724, 730
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 47, 669
BstKTI GATC 3 cut(s) 307, 583, 754
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 3 cut(s) 304, 580, 751
BstMWI GCNNNNNNNGC 3 cut(s) 350, 365, 628
BstV1I GCAGC 2 cut(s) 8, 380
BstV2I GAAGAC 2 cut(s) 110, 797
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
Bsu36I CCTNAGG 2 cut(s) 47, 669
BsuRI GGCC 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 729, 768
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 728
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 317
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 47, 669
DpnI GATC 3 cut(s) 306, 582, 753
DpnII GATC 3 cut(s) 304, 580, 751
Ecl136II GAGCTC 1 cut(s) 665
Eco24I GRGCYC 1 cut(s) 667
Eco32I GATATC 2 cut(s) 238, 250
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 122
Eco81I CCTNAGG 2 cut(s) 47, 669
EcoICRI GAGCTC 1 cut(s) 665
EcoRV GATATC 2 cut(s) 238, 250
EcoT22I ATGCAT 2 cut(s) 133, 145
EcoT38I GRGCYC 1 cut(s) 667
FaeI CATG 1 cut(s) 320
FaiI YATR 9 cut(s) 133, 135, 145, 147, 243, 318, 365, 542, 573
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 316
FauI CCCGC 1 cut(s) 697
FauNDI CATATG 1 cut(s) 145
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 22, 369
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 2 cut(s) 22, 369
FspBI CTAG 4 cut(s) 32, 287, 866, 874
GluI GCNGC 2 cut(s) 22, 369
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 334
Hin1II CATG 1 cut(s) 320
HincII GTYRAC 1 cut(s) 596
HindII GTYRAC 1 cut(s) 596
HindIII AAGCTT 2 cut(s) 8, 221
HinfI GANTC 4 cut(s) 281, 320, 530, 592
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 3 cut(s) 196, 329, 596
Hpy188I TCNGA 3 cut(s) 113, 280, 810
Hpy188III TCNNGA 5 cut(s) 179, 470, 634, 668, 716
Hpy8I GTNNAC 3 cut(s) 196, 329, 596
Hpy99I CGWCG 1 cut(s) 588
HpyAV CCTTC 4 cut(s) 379, 598, 772, 805
HpyCH4III ACNGT 2 cut(s) 724, 730
HpyCH4V TGCA 7 cut(s) 68, 92, 131, 143, 186, 353, 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 365, 628
HpyF3I CTNAG 2 cut(s) 47, 669
Hsp92II CATG 1 cut(s) 320
Kzo9I GATC 3 cut(s) 304, 580, 751
LmnI GCTCC 4 cut(s) 181, 457, 662, 670
Lsp1109I GCAGC 2 cut(s) 8, 380
LweI GCATC 1 cut(s) 55
MaeI CTAG 4 cut(s) 32, 287, 866, 874
MaeIII GTNAC 4 cut(s) 282, 495, 624, 724
MalI GATC 3 cut(s) 306, 582, 753
MboI GATC 3 cut(s) 304, 580, 751
MboII GAAGA 8 cut(s) 47, 115, 179, 196, 256, 259, 746, 802
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 6 cut(s) 76, 259, 274, 442, 488, 836
MlyI GAGTC 2 cut(s) 290, 601
MmeI TCCRAC 2 cut(s) 435, 569
MnlI CCTC 2 cut(s) 653, 664
Mph1103I ATGCAT 2 cut(s) 133, 145
MroXI GAANNNNTTC 3 cut(s) 11, 107, 794
MseI TTAA 2 cut(s) 126, 210
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 404
MwoI GCNNNNNNNGC 3 cut(s) 350, 365, 628
NdeI CATATG 1 cut(s) 145
NdeII GATC 3 cut(s) 304, 580, 751
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 2 cut(s) 609, 863
NmuCI GTSAC 3 cut(s) 282, 624, 724
NsiI ATGCAT 2 cut(s) 133, 145
NspV TTCGAA 1 cut(s) 270
PdmI GAANNNNTTC 3 cut(s) 11, 107, 794
PfeI GAWTC 2 cut(s) 320, 530
PflMI CCANNNNNTGG 1 cut(s) 484
PkrI GCNGC 2 cut(s) 23, 370
PleI GAGTC 2 cut(s) 289, 600
PpsI GAGTC 2 cut(s) 289, 600
PshBI ATTAAT 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 2 cut(s) 609, 863
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 576
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 2 cut(s) 126, 210
SatI GCNGC 2 cut(s) 22, 369
Sau3AI GATC 3 cut(s) 304, 580, 751
SchI GAGTC 2 cut(s) 290, 601
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SpeI ACTAGT 1 cut(s) 286
Sse9I AATT 6 cut(s) 76, 259, 274, 442, 488, 836
SsiI CCGC 1 cut(s) 704
SspI AATATT 1 cut(s) 301
SspMI CTAG 4 cut(s) 32, 287, 866, 874
SstI GAGCTC 1 cut(s) 667
TaaI ACNGT 2 cut(s) 724, 730
TaqI TCGA 3 cut(s) 270, 717, 734
TasI AATT 6 cut(s) 76, 259, 274, 442, 488, 836
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 2 cut(s) 320, 530
Tru1I TTAA 2 cut(s) 126, 210
Tru9I TTAA 2 cut(s) 126, 210
TscAI CASTG 2 cut(s) 729, 768
TseFI GTSAC 3 cut(s) 282, 624, 724
TseI GCWGC 2 cut(s) 21, 368
Tsp45I GTSAC 3 cut(s) 282, 624, 724
TspDTI ATGAA 5 cut(s) 162, 180, 186, 196, 692
TspRI CASTG 2 cut(s) 729, 768
Van91I CCANNNNNTGG 1 cut(s) 484
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 4 cut(s) 76, 259, 274, 836
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 3 cut(s) 11, 107, 794
XspI CTAG 4 cut(s) 32, 287, 866, 874
Zsp2I ATGCAT 2 cut(s) 133, 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.