Rorug05G0183200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000062
Physical Location & Seq
Forward (+)
17656438 .. 17659355
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0183200.1

Sequence Viewer

Length: 2373 bp
ATGTACTCGAATCGGAAAACCAATCAATGGCGCTTAGTGTTGTACTCTTCCATGTTAGTCATCACCATGATCACAGTTGATGTTGTGGCCGGAGATTCACTAGACACCGACAAAGAAGTTCTGCTGAGCCTTAAGGCGTTTCTGCAAGAACAAAATCGAGTAAACCAAGGTGAATACTCAATATGGAACCAGATCAGCAACGACCCTTGTGAGTGGCCTAGAATATCATGCAATGGTGAAAACAGAGTCACTGCAGTTAATCTCGCCGGTAGCAAAATCTCTGGTGAGGTTTTCAGAAATTTCTCTTCCCTGACAGCACTGTCACACCTAGACCTGTCCATGAACACTCTTTCTGGAGCTGTCCCAGAGGACCTGAGTCAATGCCTGAGCCTCAAGTATCTCAACCTATCATTTAACATTCTTGAAAGTGAGCTGAAATTGCACGGGTTGAGTCAATTGACTGTTCTTGATTTGGCTGTGAATAGGTTTTATGGGGATATGAAGACGAGCTTCCCCGGAATTTGCACAAACTTGGTGGTACTAAATGTTTCATTGAATAACTTTACTGGTAGGATCGATGAGTACTTTGATGAATGTTTGAATTTGCAGTACTTGGATTTGAGCTCAAACAATTTTAGTGGTGATGTATGGGTTGGATTCACAAGGCTTAGGGAGTTTTCAGTAGCTGATAATAATCTCAGTGGGGTAATTTTGCCGTCTGTTTTCAATGGTAATTGTAGTTTAGTGAATTTAGACCTGTCAGAGAATAACTTTTCTGGTCGAGTTCCAAAGGAGATTTCAAATTGCCGGAATTTGGTTACTTTGAATCTATGGGGAAACAAATTTACAGGAGTAATTCCATCTGAGATTGGGGGCATTTCAAGTCTGAAATCTTTATCGTTGGGCAATAATACTTTTTCTAGAGTGATCCCAGAATCCCTGTTGGAGTTGAGCAGCTTGGTCTTATTAGATTTGAGTAGGAACAATTTTGGAGGGGATATACAAGACATCTTCGGGAAATTCACACAGGTGAAGTTTCTTGTGCTGCACTCAAACTCGTACAGGGGTGGTATATATTCATCCGGAATTCTTAAGCTACCCAATGTTTCTCAGTTAGACCTCAGCCACAACAACTTTGCAGGTTGTTTACCAGTTGAAGTTGCCCAAATGCAAAGCTTGAAGTATTTGTTCCTTGCCTACAATCAATTCAATGGAACTATACCACCAGAGTATGGAAATTTGCTACACCTCCAAGCACTAGACCTTTCCTTCAACAGCCTAACCGGGTCAATTCCCACCACCATAGGAAAATTGAATTCTCTCTTGTTGTTGATGCTTGCAAGAAATATGCTAACTGGTCCAATTCCTAAGGAGTTGGGGAATTGTACTAGCTTGTTGTGGTTGAACCTTTCAAACAACAAGCTCAATGGGACAATCCCATCTGAATTGAAGAATATTGGGACAAATGTTGGACCAACATTTGAATCAAACAATCAGGACAAGGATCAGGTCGTAGTTGGATCTGGGGAGTGCTTAGAGATGAAGAGATGGATTCCAGGAGACTACTCTCCATTCAGTTTTGTGTATACAACCCCTTCTCGGAAGAGTTGTAGAAACAAATGGGATCAGCTACTCAAGGGAAATGGCGGTTTTCCCATGTGTACTCCTGGTAGTAGTATAAGGACATCAAAAATCTCTGGTTATATTCAACTGAGTGGAAATCAGCTTTCAGGTCAGGTCCCTCCGGAGATTGGTAAGATGCACAACTTTAGTATGTTGGATATGGGTTTCAATAAATTAAACGGAGAACTCCCTGCAGAGATCGGACAATTGCCACTTGTAGTGTTGAACCTCAGTAGAAACAGTTTTTCAGGCGATATCCCAATGGAAATGGGAAACATGAAGTGCATGCAGAATCTGGATTTGTCCTACAACAACTTTTCTGGTAAGTTCCCTATAAGTTTAAACAGCTTGACTGAGCTAAGCAAGTTCACCGTCGCATACAATCCACTCATCTCTGGTGTAATTCCTGCAAGTGGGCAATTGGCAACATTTGAGGAGGAGTCCTACCTTGGGGATCCCCTCCTTATCCTTCCGACATTTATTAAAAACTCCCCTAATTATGAGGATGGTGGTGACACCCTCCTTATCCATCCAGAATTTATCAACAACTCCACGGATCATGAAGATGAGGTTATAAGTCAAGGATTTTACAACGGCATGGGGATTGGGTTTGCAGTAGGATTTTGGGGAGTTTGTGCAAGTTTGATTTTCATCAGGTCCTGGAGATACTCATACTATAGGTTCTTGAATTTTTCCTATGACTGGCTTTATGTGCGACTCCAAAAGATGTGCTTGGAAGCTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

790

Amino Acids

87.62

Weight (kDa)

5.14

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 152 - 212 2.2e-06 Leucine rich repeat
LRR_8 PF13855 270 - 330 2.1e-09 Leucine rich repeat
LRR_14 PF23598 385 - 483 3.3e-09 Leucine-rich repeat region
LRR_8 PF13855 416 - 475 1.1e-06 Leucine rich repeat
LRR_14 PF23598 568 - 667 9.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2198
AasI GACNNNNNNGTC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 1130
AccB7I CCANNNNNTGG 2 cut(s) 27, 1232
AccI GTMKAC 1 cut(s) 1586
AccIII TCCGGA 2 cut(s) 1082, 1744
AciI CCGC 1 cut(s) 1647
AclWI GGATC 8 cut(s) 581, 922, 1512, 1528, 1632, 2072, 2085, 2187
AcoI YGGCCR 1 cut(s) 87
AfaI GTAC 8 cut(s) 5, 44, 540, 584, 611, 1061, 1387, 1663
AfiI CCNNNNNNNGG 8 cut(s) 27, 814, 1232, 1599, 1751, 2036, 2073, 2325
AflII CTTAAG 2 cut(s) 131, 1091
AjnI CCWGG 3 cut(s) 1555, 1666, 2282
AjuI GAANNNNNNNTTGG 2 cut(s) 781, 813
AleI CACNNNNGTG 1 cut(s) 1028
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 1 cut(s) 1554
AlwI GGATC 8 cut(s) 581, 922, 1512, 1528, 1632, 2072, 2085, 2187
AlwNI CAGNNNCTG 3 cut(s) 686, 1918, 2283
Aor13HI TCCGGA 2 cut(s) 1082, 1744
AoxI GGCC 2 cut(s) 87, 215
ApeKI GCWGC 2 cut(s) 954, 1045
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 5 cut(s) 370, 1358, 1472, 1738, 2280
AsuC2I CCSGG 2 cut(s) 516, 1285
AsuHPI GGTGA 8 cut(s) 55, 182, 248, 296, 653, 1042, 1984, 2147
AvaII GGWCC 5 cut(s) 370, 1358, 1472, 1738, 2280
AxyI CCTNAGG 1 cut(s) 1368
BamHI GGATCC 1 cut(s) 2077
BanII GRGCYC 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 626
BbvCI CCTCAGC 1 cut(s) 1121
BbvI GCAGC 2 cut(s) 966, 1032
BccI CCATC 5 cut(s) 868, 1447, 1542, 2123, 2160
BceAI ACGGC 2 cut(s) 700, 2233
BciT130I CCWGG 3 cut(s) 1557, 1668, 2284
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 2 cut(s) 516, 1285
BcoDI GTCTC 1 cut(s) 1554
BfaI CTAG 6 cut(s) 101, 219, 329, 921, 1259, 1389
BfmI CTRYAG 3 cut(s) 252, 1815, 2299
BfoI RGCGCY 1 cut(s) 34
BfrI CTTAAG 2 cut(s) 131, 1091
BfuAI ACCTGC 1 cut(s) 1130
BisI GCNGC 2 cut(s) 955, 1046
BlpI GCTNAGC 2 cut(s) 125, 1982
BlsI GCNGC 2 cut(s) 956, 1047
BmcAI AGTACT 2 cut(s) 584, 611
Bme1390I CCNGG 5 cut(s) 516, 1285, 1557, 1668, 2284
Bme18I GGWCC 5 cut(s) 370, 1358, 1472, 1738, 2280
BmgT120I GGNCC 5 cut(s) 370, 1358, 1472, 1738, 2280
BmiI GGNNCC 3 cut(s) 188, 1740, 2079
BmrFI CCNGG 5 cut(s) 516, 1285, 1557, 1668, 2284
BmsI GCATC 2 cut(s) 1323, 1749
BoxI GACNNNNGTC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 375, 2305
Bpu10I CCTNAGC 3 cut(s) 386, 668, 1121
Bpu1102I GCTNAGC 2 cut(s) 125, 1982
BpuEI CTTGAG 2 cut(s) 377, 1619
BpuMI CCSGG 2 cut(s) 516, 1285
Bsa29I ATCGAT 1 cut(s) 576
BsaBI GATNNNNATC 2 cut(s) 693, 2273
BsaJI CCNNGG 4 cut(s) 166, 514, 2071, 2175
BsaWI WCCGGW 2 cut(s) 1082, 1744
Bsc4I CCNNNNNNNGG 8 cut(s) 27, 814, 1232, 1599, 1751, 2036, 2073, 2325
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 4 cut(s) 571, 1151, 1360, 2330
Bse21I CCTNAGG 1 cut(s) 1368
Bse3DI GCAATG 1 cut(s) 238
Bse8I GATNNNNATC 2 cut(s) 693, 2273
BseAI TCCGGA 2 cut(s) 1082, 1744
BseBI CCWGG 3 cut(s) 1557, 1668, 2284
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 4 cut(s) 166, 514, 2071, 2175
BseGI GGATG 3 cut(s) 1079, 2134, 2152
BseJI GATNNNNATC 2 cut(s) 693, 2273
BseLI CCNNNNNNNGG 8 cut(s) 27, 814, 1232, 1599, 1751, 2036, 2073, 2325
BseMI GCAATG 1 cut(s) 238
BseNI ACTGG 4 cut(s) 571, 1151, 1360, 2330
BseRI GAGGAG 2 cut(s) 2072, 2075
BseXI GCAGC 2 cut(s) 966, 1032
BsgI GTGCAG 1 cut(s) 1031
BshFI GGCC 2 cut(s) 89, 217
BshVI ATCGAT 1 cut(s) 576
BsiHKAI GWGCWC 1 cut(s) 626
BsiSI CCGG 7 cut(s) 90, 267, 516, 808, 1083, 1284, 1745
BslFI GGGAC 4 cut(s) 347, 1444, 1474, 1724
BslI CCNNNNNNNGG 8 cut(s) 27, 814, 1232, 1599, 1751, 2036, 2073, 2325
BsmAI GTCTC 1 cut(s) 1554
BsmFI GGGAC 4 cut(s) 347, 1444, 1474, 1724
BsnI GGCC 2 cut(s) 89, 217
Bsp1286I GDGCHC 1 cut(s) 626
Bsp13I TCCGGA 2 cut(s) 1082, 1744
Bsp1720I GCTNAGC 2 cut(s) 125, 1982
BspACI CCGC 1 cut(s) 1647
BspANI GGCC 2 cut(s) 89, 217
BspDI ATCGAT 1 cut(s) 576
BspEI TCCGGA 2 cut(s) 1082, 1744
BspHI TCATGA 1 cut(s) 2182
BspLI GGNNCC 3 cut(s) 188, 1740, 2079
BspMAI CTGCAG 2 cut(s) 256, 1819
BspMI ACCTGC 1 cut(s) 1130
BspPI GGATC 8 cut(s) 581, 922, 1512, 1528, 1632, 2072, 2085, 2187
BspTI CTTAAG 2 cut(s) 131, 1091
BsrDI GCAATG 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 4 cut(s) 571, 1151, 1360, 2330
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 166, 514, 2071, 2175
BssNAI GTATAC 1 cut(s) 1587
BssT1I CCWWGG 2 cut(s) 166, 2071
Bst1107I GTATAC 1 cut(s) 1587
Bst2UI CCWGG 3 cut(s) 1557, 1668, 2284
Bst4CI ACNGT 5 cut(s) 76, 321, 463, 1865, 1996
Bst6I CTCTTC 4 cut(s) 52, 310, 1538, 1598
BstAFI CTTAAG 2 cut(s) 131, 1091
BstC8I GCNNGC 2 cut(s) 1338, 1910
BstDSI CCRYGG 1 cut(s) 2175
BstF5I GGATG 3 cut(s) 1079, 2134, 2152
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 1554
BstMWI GCNNNNNNNGC 2 cut(s) 439, 2335
BstNI CCWGG 3 cut(s) 1557, 1668, 2284
BstNSI RCATGY 1 cut(s) 1912
BstPAI GACNNNNGTC 1 cut(s) 375
BstSCI CCNGG 5 cut(s) 514, 1283, 1555, 1666, 2282
BstSFI CTRYAG 3 cut(s) 252, 1815, 2299
BstV1I GCAGC 2 cut(s) 966, 1032
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 1520, 2077
BstYI RGATCY 2 cut(s) 1520, 2077
BstZ17I GTATAC 1 cut(s) 1587
Bsu15I ATCGAT 1 cut(s) 576
Bsu36I CCTNAGG 1 cut(s) 1368
BsuRI GGCC 2 cut(s) 89, 217
BsuTUI ATCGAT 1 cut(s) 576
BtgI CCRYGG 1 cut(s) 2175
BtsCI GGATG 3 cut(s) 1079, 2134, 2152
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 317, 706
BveI ACCTGC 1 cut(s) 1130
Cac8I GCNNGC 2 cut(s) 1338, 1910
CaiI CAGNNNCTG 3 cut(s) 686, 1918, 2283
CciI TCATGA 1 cut(s) 2182
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 5 cut(s) 370, 1358, 1472, 1738, 2280
ClaI ATCGAT 1 cut(s) 576
Csp6I GTAC 8 cut(s) 4, 43, 539, 583, 610, 1060, 1386, 1662
CspCI CAANNNNNGTGG 4 cut(s) 516, 551, 619, 654
CviAII CATG 9 cut(s) 52, 67, 228, 340, 1657, 1900, 1909, 2183, 2221
CviQI GTAC 8 cut(s) 4, 43, 539, 583, 610, 1060, 1386, 1662
DraI TTTAAA 1 cut(s) 1965
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 52, 310, 1538, 1598
EarI CTCTTC 4 cut(s) 52, 310, 1538, 1598
Ecl136II GAGCTC 1 cut(s) 624
Eco130I CCWWGG 2 cut(s) 166, 2071
Eco24I GRGCYC 1 cut(s) 626
Eco32I GATATC 1 cut(s) 1879
Eco47I GGWCC 5 cut(s) 370, 1358, 1472, 1738, 2280
Eco53kI GAGCTC 1 cut(s) 624
Eco81I CCTNAGG 1 cut(s) 1368
EcoICRI GAGCTC 1 cut(s) 624
EcoO109I RGGNCCY 3 cut(s) 370, 1738, 2280
EcoRI GAATTC 2 cut(s) 1086, 1315
EcoRII CCWGG 3 cut(s) 1555, 1666, 2282
EcoRV GATATC 1 cut(s) 1879
EcoT14I CCWWGG 2 cut(s) 166, 2071
EcoT38I GRGCYC 1 cut(s) 626
ErhI CCWWGG 2 cut(s) 166, 2071
FaeI CATG 9 cut(s) 55, 70, 231, 343, 1660, 1903, 1912, 2186, 2224
FalI AAGNNNNNCTT 4 cut(s) 494, 526, 2339, 2371
FaqI GGGAC 4 cut(s) 347, 1444, 1474, 1724
FatI CATG 9 cut(s) 51, 66, 227, 339, 1656, 1899, 1908, 2182, 2220
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 1586
Fnu4HI GCNGC 2 cut(s) 955, 1046
FokI GGATG 3 cut(s) 1066, 2139, 2141
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 2 cut(s) 955, 1046
FspBI CTAG 6 cut(s) 101, 219, 329, 921, 1259, 1389
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 955, 1046
GsuI CTGGAG 2 cut(s) 375, 2305
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 2 cut(s) 89, 217
HapII CCGG 7 cut(s) 90, 267, 516, 808, 1083, 1284, 1745
HhaI GCGC 1 cut(s) 33
Hin1II CATG 9 cut(s) 55, 70, 231, 343, 1660, 1903, 1912, 2186, 2224
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 1174
HpaII CCGG 7 cut(s) 90, 267, 516, 808, 1083, 1284, 1745
HphI GGTGA 8 cut(s) 55, 182, 248, 296, 653, 1042, 1984, 2147
Hpy166II GTNNAC 5 cut(s) 163, 1148, 1587, 1662, 1992
Hpy188I TCNGA 9 cut(s) 15, 296, 763, 865, 888, 1444, 1602, 1826, 2097
Hpy8I GTNNAC 5 cut(s) 163, 1148, 1587, 1662, 1992
Hpy99I CGWCG 1 cut(s) 2000
HpyAV CCTTC 3 cut(s) 1279, 1605, 2102
HpyCH4III ACNGT 5 cut(s) 76, 321, 463, 1865, 1996
HpyF10VI GCNNNNNNNGC 2 cut(s) 439, 2335
Hsp92II CATG 9 cut(s) 55, 70, 231, 343, 1660, 1903, 1912, 2186, 2224
HspAI GCGC 1 cut(s) 31
Kpn2I TCCGGA 2 cut(s) 1082, 1744
Ksp22I TGATCA 1 cut(s) 69
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 2 cut(s) 966, 1032
LweI GCATC 2 cut(s) 1323, 1749
MaeI CTAG 6 cut(s) 101, 219, 329, 921, 1259, 1389
MaeIII GTNAC 4 cut(s) 247, 321, 817, 2135
MboII GAAGA 8 cut(s) 39, 297, 514, 1003, 1462, 1555, 1615, 2198
MfeI CAATTG 3 cut(s) 455, 1829, 2042
MflI RGATCY 2 cut(s) 1520, 2077
MhlI GDGCHC 1 cut(s) 626
MlyI GAGTC 5 cut(s) 255, 385, 460, 2072, 2334
MmeI TCCRAC 6 cut(s) 634, 924, 1450, 1498, 1758, 2120
MroI TCCGGA 2 cut(s) 1082, 1744
MseI TTAA 8 cut(s) 132, 258, 414, 1092, 1799, 1964, 2106, 2371
MslI CAYNNNNRTG 3 cut(s) 65, 1028, 2187
MspCI CTTAAG 2 cut(s) 131, 1091
MspI CCGG 7 cut(s) 90, 267, 516, 808, 1083, 1284, 1745
MspR9I CCNGG 5 cut(s) 516, 1285, 1557, 1668, 2284
MssI GTTTAAAC 1 cut(s) 1965
MunI CAATTG 3 cut(s) 455, 1829, 2042
MvaI CCWGG 3 cut(s) 1557, 1668, 2284
MwoI GCNNNNNNNGC 2 cut(s) 439, 2335
NciI CCSGG 2 cut(s) 516, 1285
NlaIII CATG 9 cut(s) 55, 70, 231, 343, 1660, 1903, 1912, 2186, 2224
NlaIV GGNNCC 3 cut(s) 188, 1740, 2079
NmuCI GTSAC 3 cut(s) 247, 321, 2135
NspI RCATGY 1 cut(s) 1912
OliI CACNNNNGTG 1 cut(s) 1028
PaeI GCATGC 1 cut(s) 1912
PagI TCATGA 1 cut(s) 2182
PfeI GAWTC 8 cut(s) 10, 95, 657, 826, 935, 1484, 1552, 1915
PflMI CCANNNNNTGG 2 cut(s) 27, 1232
PfoI TCCNGGA 2 cut(s) 1555, 2282
PkrI GCNGC 2 cut(s) 956, 1047
PleI GAGTC 5 cut(s) 254, 384, 459, 2071, 2334
PmeI GTTTAAAC 1 cut(s) 1965
PpsI GAGTC 5 cut(s) 254, 384, 459, 2071, 2334
PpuMI RGGWCCY 3 cut(s) 370, 1738, 2280
PshAI GACNNNNGTC 1 cut(s) 375
PsiI TTATAA 1 cut(s) 2198
Psp124BI GAGCTC 1 cut(s) 626
Psp5II RGGWCCY 3 cut(s) 370, 1738, 2280
Psp6I CCWGG 3 cut(s) 1555, 1666, 2282
PspGI CCWGG 3 cut(s) 1555, 1666, 2282
PspN4I GGNNCC 3 cut(s) 188, 1740, 2079
PspPI GGNCC 5 cut(s) 370, 1358, 1472, 1738, 2280
PspPPI RGGWCCY 3 cut(s) 370, 1738, 2280
PstI CTGCAG 2 cut(s) 256, 1819
PstNI CAGNNNCTG 3 cut(s) 686, 1918, 2283
PsuI RGATCY 2 cut(s) 1520, 2077
RsaI GTAC 8 cut(s) 5, 44, 540, 584, 611, 1061, 1387, 1663
RsaNI GTAC 8 cut(s) 4, 43, 539, 583, 610, 1060, 1386, 1662
RseI CAYNNNNRTG 3 cut(s) 65, 1028, 2187
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 8 cut(s) 132, 258, 414, 1092, 1799, 1964, 2106, 2371
SatI GCNGC 2 cut(s) 955, 1046
Sau96I GGNCC 5 cut(s) 370, 1358, 1472, 1738, 2280
ScaI AGTACT 2 cut(s) 584, 611
SchI GAGTC 5 cut(s) 255, 385, 460, 2072, 2334
ScrFI CCNGG 5 cut(s) 516, 1285, 1557, 1668, 2284
SduI GDGCHC 1 cut(s) 626
SfaNI GCATC 2 cut(s) 1323, 1749
SfcI CTRYAG 3 cut(s) 252, 1815, 2299
SinI GGWCC 5 cut(s) 370, 1358, 1472, 1738, 2280
SmiMI CAYNNNNRTG 3 cut(s) 65, 1028, 2187
SmlI CTYRAG 4 cut(s) 131, 392, 1091, 1634
SmoI CTYRAG 4 cut(s) 131, 392, 1091, 1634
SphI GCATGC 1 cut(s) 1912
SsiI CCGC 1 cut(s) 1647
SspI AATATT 1 cut(s) 1456
SspMI CTAG 6 cut(s) 101, 219, 329, 921, 1259, 1389
SstI GAGCTC 1 cut(s) 626
StyD4I CCNGG 5 cut(s) 514, 1283, 1555, 1666, 2282
StyI CCWWGG 2 cut(s) 166, 2071
TaaI ACNGT 5 cut(s) 76, 321, 463, 1865, 1996
TaqI TCGA 4 cut(s) 8, 157, 576, 781
TatI WGTACW 6 cut(s) 3, 42, 582, 609, 1385, 1661
TfiI GAWTC 8 cut(s) 10, 95, 657, 826, 935, 1484, 1552, 1915
Tru1I TTAA 8 cut(s) 132, 258, 414, 1092, 1799, 1964, 2106, 2371
Tru9I TTAA 8 cut(s) 132, 258, 414, 1092, 1799, 1964, 2106, 2371
TscAI CASTG 3 cut(s) 256, 324, 706
TseFI GTSAC 3 cut(s) 247, 321, 2135
TseI GCWGC 2 cut(s) 954, 1045
Tsp45I GTSAC 3 cut(s) 247, 321, 2135
TspDTI ATGAA 9 cut(s) 356, 515, 540, 606, 1068, 1556, 1916, 2199, 2263
TspGWI ACGGA 2 cut(s) 1818, 2192
TspRI CASTG 3 cut(s) 256, 324, 706
Van91I CCANNNNNTGG 2 cut(s) 27, 1232
Vha464I CTTAAG 2 cut(s) 131, 1091
VpaK11BI GGWCC 5 cut(s) 370, 1358, 1472, 1738, 2280
XbaI TCTAGA 1 cut(s) 920
XceI RCATGY 1 cut(s) 1912
XmiI GTMKAC 1 cut(s) 1586
XspI CTAG 6 cut(s) 101, 219, 329, 921, 1259, 1389
ZrmI AGTACT 2 cut(s) 584, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.