LRR-repeat protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1292 |
| Acc36I | ACCTGC | 1 cut(s) | 1321 |
| AccI | GTMKAC | 1 cut(s) | 1070 |
| AccII | CGCG | 1 cut(s) | 168 |
| AccIII | TCCGGA | 1 cut(s) | 636 |
| AciI | CCGC | 8 cut(s) | 163, 166, 190, 449, 725, 1300, 1791, 2176 |
| AclWI | GGATC | 3 cut(s) | 531, 1473, 2315 |
| AcoI | YGGCCR | 3 cut(s) | 160, 469, 1700 |
| AcsI | RAATTY | 2 cut(s) | 824, 1813 |
| AcuI | CTGAAG | 4 cut(s) | 320, 1556, 1606, 1674 |
| AcvI | CACGTG | 1 cut(s) | 889 |
| AdeI | CACNNNGTG | 1 cut(s) | 1831 |
| AfaI | GTAC | 8 cut(s) | 264, 835, 878, 1127, 1369, 1697, 1787, 2333 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 196, 215, 364, 484, 2104, 2125, 2341 |
| AflII | CTTAAG | 1 cut(s) | 1081 |
| AflIII | ACRYGT | 1 cut(s) | 886 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 184 |
| AjiI | CACGTC | 1 cut(s) | 2044 |
| AjnI | CCWGG | 3 cut(s) | 363, 933, 1635 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 589, 621 |
| Alw21I | GWGCWC | 3 cut(s) | 390, 535, 672 |
| Alw26I | GTCTC | 3 cut(s) | 9, 99, 2034 |
| Alw44I | GTGCAC | 1 cut(s) | 386 |
| AlwI | GGATC | 3 cut(s) | 531, 1473, 2315 |
| Ama87I | CYCGRG | 1 cut(s) | 872 |
| Aor13HI | TCCGGA | 1 cut(s) | 636 |
| AoxI | GGCC | 9 cut(s) | 87, 121, 160, 198, 366, 469, 685, 1638, 1700 |
| ApaLI | GTGCAC | 1 cut(s) | 386 |
| ApeKI | GCWGC | 5 cut(s) | 446, 856, 979, 2195, 2227 |
| ApoI | RAATTY | 2 cut(s) | 824, 1813 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1879, 1911 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 227, 781 |
| AspLEI | GCGC | 2 cut(s) | 170, 993 |
| AspS9I | GGNCC | 3 cut(s) | 199, 355, 1054 |
| AsuC2I | CCSGG | 1 cut(s) | 216 |
| AsuHPI | GGTGA | 3 cut(s) | 648, 673, 731 |
| AvaI | CYCGRG | 1 cut(s) | 872 |
| AvaII | GGWCC | 2 cut(s) | 355, 1054 |
| BaeGI | GKGCMC | 2 cut(s) | 390, 1394 |
| BalI | TGGCCA | 2 cut(s) | 471, 1702 |
| BbrPI | CACGTG | 1 cut(s) | 889 |
| BbsI | GAAGAC | 2 cut(s) | 1142, 1544 |
| Bbv12I | GWGCWC | 3 cut(s) | 390, 535, 672 |
| BbvCI | CCTCAGC | 1 cut(s) | 210 |
| BbvI | GCAGC | 5 cut(s) | 433, 868, 991, 2182, 2214 |
| BccI | CCATC | 5 cut(s) | 388, 756, 1027, 1031, 1663 |
| BceAI | ACGGC | 3 cut(s) | 136, 175, 353 |
| BciT130I | CCWGG | 3 cut(s) | 365, 935, 1637 |
| BclI | TGATCA | 1 cut(s) | 1152 |
| BcnI | CCSGG | 1 cut(s) | 216 |
| BcoDI | GTCTC | 3 cut(s) | 9, 99, 2034 |
| BfaI | CTAG | 5 cut(s) | 732, 986, 1953, 2220, 2336 |
| BfmI | CTRYAG | 3 cut(s) | 455, 969, 1985 |
| BfoI | RGCGCY | 1 cut(s) | 994 |
| BfrI | CTTAAG | 1 cut(s) | 1081 |
| BfuAI | ACCTGC | 1 cut(s) | 1321 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 257 |
| BisI | GCNGC | 8 cut(s) | 163, 166, 447, 450, 857, 980, 2196, 2228 |
| BlpI | GCTNAGC | 2 cut(s) | 1317, 1925 |
| BlsI | GCNGC | 8 cut(s) | 164, 167, 448, 451, 858, 981, 2197, 2229 |
| BmcAI | AGTACT | 1 cut(s) | 878 |
| Bme1390I | CCNGG | 4 cut(s) | 216, 365, 935, 1637 |
| Bme18I | GGWCC | 2 cut(s) | 355, 1054 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 184 |
| BmeT110I | CYCGRG | 1 cut(s) | 872 |
| BmgBI | CACGTC | 1 cut(s) | 2044 |
| BmgT120I | GGNCC | 3 cut(s) | 199, 355, 1054 |
| BmiI | GGNNCC | 1 cut(s) | 2276 |
| BmrFI | CCNGG | 4 cut(s) | 216, 365, 935, 1637 |
| BmsI | GCATC | 6 cut(s) | 928, 1269, 1498, 1890, 1903, 2182 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1630 |
| BpiI | GAAGAC | 2 cut(s) | 1142, 1544 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1966, 1998 |
| Bpu10I | CCTNAGC | 3 cut(s) | 210, 1118, 2270 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1317, 1925 |
| BpuEI | CTTGAG | 3 cut(s) | 830, 1406, 1798 |
| BpuMI | CCSGG | 1 cut(s) | 216 |
| BsaAI | YACGTR | 1 cut(s) | 889 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1041 |
| BsaJI | CCNNGG | 2 cut(s) | 1635, 1716 |
| BsaWI | WCCGGW | 1 cut(s) | 636 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 196, 215, 364, 484, 2104, 2125, 2341 |
| Bse118I | RCCGGY | 3 cut(s) | 256, 683, 2287 |
| Bse1I | ACTGG | 1 cut(s) | 1703 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1041 |
| BseAI | TCCGGA | 1 cut(s) | 636 |
| BseBI | CCWGG | 3 cut(s) | 365, 935, 1637 |
| BseDI | CCNNGG | 2 cut(s) | 1635, 1716 |
| BseGI | GGATG | 9 cut(s) | 41, 65, 943, 1042, 1071, 1165, 1444, 1726, 2056 |
| BseJI | GATNNNNATC | 1 cut(s) | 1041 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 196, 215, 364, 484, 2104, 2125, 2341 |
| BseMII | CTCAG | 7 cut(s) | 116, 224, 548, 1120, 1308, 1964, 2222 |
| BseNI | ACTGG | 1 cut(s) | 1703 |
| BseRI | GAGGAG | 3 cut(s) | 13, 63, 2079 |
| BseSI | GKGCMC | 2 cut(s) | 390, 1394 |
| BseX3I | CGGCCG | 1 cut(s) | 160 |
| BseXI | GCAGC | 5 cut(s) | 433, 868, 991, 2182, 2214 |
| BseYI | CCCAGC | 3 cut(s) | 171, 201, 1355 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| Bsh1285I | CGRYCG | 1 cut(s) | 163 |
| BshFI | GGCC | 9 cut(s) | 89, 123, 162, 200, 368, 471, 687, 1640, 1702 |
| BsiEI | CGRYCG | 1 cut(s) | 163 |
| BsiHKAI | GWGCWC | 3 cut(s) | 390, 535, 672 |
| BsiHKCI | CYCGRG | 1 cut(s) | 872 |
| BsiSI | CCGG | 5 cut(s) | 216, 257, 637, 684, 2288 |
| BslFI | GGGAC | 5 cut(s) | 172, 629, 1618, 1975, 2357 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 196, 215, 364, 484, 2104, 2125, 2341 |
| BsmAI | GTCTC | 3 cut(s) | 9, 99, 2034 |
| BsmBI | CGTCTC | 1 cut(s) | 2034 |
| BsmFI | GGGAC | 5 cut(s) | 172, 629, 1618, 1975, 2357 |
| BsmI | GAATGC | 1 cut(s) | 1277 |
| BsnI | GGCC | 9 cut(s) | 89, 123, 162, 200, 368, 471, 687, 1640, 1702 |
| BsoBI | CYCGRG | 1 cut(s) | 872 |
| Bsp1286I | GDGCHC | 4 cut(s) | 390, 535, 672, 1394 |
| Bsp13I | TCCGGA | 1 cut(s) | 636 |
| Bsp143I | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1317, 1925 |
| Bsp19I | CCATGG | 1 cut(s) | 1716 |
| BspACI | CCGC | 8 cut(s) | 163, 166, 190, 449, 725, 1300, 1791, 2176 |
| BspANI | GGCC | 9 cut(s) | 89, 123, 162, 200, 368, 471, 687, 1640, 1702 |
| BspCNI | CTCAG | 7 cut(s) | 115, 223, 547, 1119, 1309, 1965, 2223 |
| BspEI | TCCGGA | 1 cut(s) | 636 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspHI | TCATGA | 1 cut(s) | 1735 |
| BspLI | GGNNCC | 1 cut(s) | 2276 |
| BspMAI | CTGCAG | 3 cut(s) | 459, 973, 1989 |
| BspMI | ACCTGC | 1 cut(s) | 1321 |
| BspPI | GGATC | 3 cut(s) | 531, 1473, 2315 |
| BspTI | CTTAAG | 1 cut(s) | 1081 |
| BsrFI | RCCGGY | 3 cut(s) | 256, 683, 2287 |
| BsrI | ACTGG | 1 cut(s) | 1703 |
| BssAI | RCCGGY | 3 cut(s) | 256, 683, 2287 |
| BssECI | CCNNGG | 2 cut(s) | 1635, 1716 |
| BssMI | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| BssNAI | GTATAC | 1 cut(s) | 1071 |
| BssT1I | CCWWGG | 1 cut(s) | 1716 |
| Bst1107I | GTATAC | 1 cut(s) | 1071 |
| Bst2UI | CCWGG | 3 cut(s) | 365, 935, 1637 |
| Bst4CI | ACNGT | 8 cut(s) | 633, 900, 1629, 1829, 1891, 2099, 2134, 2259 |
| Bst6I | CTCTTC | 5 cut(s) | 52, 273, 1371, 1487, 2133 |
| BstAFI | CTTAAG | 1 cut(s) | 1081 |
| BstBAI | YACGTR | 1 cut(s) | 889 |
| BstC8I | GCNNGC | 5 cut(s) | 386, 943, 1113, 1869, 2289 |
| BstDSI | CCRYGG | 1 cut(s) | 1716 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 362 |
| BstF5I | GGATG | 9 cut(s) | 41, 65, 943, 1042, 1071, 1165, 1444, 1726, 2056 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstH2I | RGCGCY | 1 cut(s) | 994 |
| BstHHI | GCGC | 2 cut(s) | 170, 993 |
| BstKTI | GATC | 5 cut(s) | 526, 702, 1155, 1468, 2310 |
| BstMAI | GTCTC | 3 cut(s) | 9, 99, 2034 |
| BstMBI | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| BstMCI | CGRYCG | 1 cut(s) | 163 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 211, 257, 314, 988, 1788 |
| BstNI | CCWGG | 3 cut(s) | 365, 935, 1637 |
| BstNSI | RCATGY | 2 cut(s) | 856, 2001 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1630 |
| BstSCI | CCNGG | 4 cut(s) | 214, 363, 933, 1635 |
| BstSFI | CTRYAG | 3 cut(s) | 455, 969, 1985 |
| BstSLI | GKGCMC | 2 cut(s) | 390, 1394 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 5 cut(s) | 433, 868, 991, 2182, 2214 |
| BstV2I | GAAGAC | 2 cut(s) | 1142, 1544 |
| BstX2I | RGATCY | 2 cut(s) | 523, 1465 |
| BstYI | RGATCY | 2 cut(s) | 523, 1465 |
| BstZ17I | GTATAC | 1 cut(s) | 1071 |
| BstZI | CGGCCG | 1 cut(s) | 160 |
| BsuRI | GGCC | 9 cut(s) | 89, 123, 162, 200, 368, 471, 687, 1640, 1702 |
| BtgI | CCRYGG | 1 cut(s) | 1716 |
| BtrI | CACGTC | 1 cut(s) | 2044 |
| BtsCI | GGATG | 9 cut(s) | 41, 65, 943, 1042, 1071, 1165, 1444, 1726, 2056 |
| BtsI | GCAGTG | 1 cut(s) | 452 |
| BtsIMutI | CAGTG | 4 cut(s) | 452, 1825, 2139, 2154 |
| BveI | ACCTGC | 1 cut(s) | 1321 |
| Cac8I | GCNNGC | 5 cut(s) | 386, 943, 1113, 1869, 2289 |
| CciI | TCATGA | 1 cut(s) | 1735 |
| CfoI | GCGC | 2 cut(s) | 170, 993 |
| Cfr10I | RCCGGY | 3 cut(s) | 256, 683, 2287 |
| Cfr13I | GGNCC | 3 cut(s) | 199, 355, 1054 |
| CseI | GACGC | 1 cut(s) | 1283 |
| Csp6I | GTAC | 8 cut(s) | 263, 834, 877, 1126, 1368, 1696, 1786, 2332 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1939, 1974 |
| CviQI | GTAC | 8 cut(s) | 263, 834, 877, 1126, 1368, 1696, 1786, 2332 |
| DpnI | GATC | 5 cut(s) | 525, 701, 1154, 1467, 2309 |
| DpnII | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| DraIII | CACNNNGTG | 1 cut(s) | 1831 |
| DriI | GACNNNNNGTC | 1 cut(s) | 184 |
| EaeI | YGGCCR | 3 cut(s) | 160, 469, 1700 |
| EagI | CGGCCG | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 5 cut(s) | 52, 273, 1371, 1487, 2133 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 184 |
| EarI | CTCTTC | 5 cut(s) | 52, 273, 1371, 1487, 2133 |
| EciI | GGCGGA | 1 cut(s) | 1289 |
| EclXI | CGGCCG | 1 cut(s) | 160 |
| Eco130I | CCWWGG | 1 cut(s) | 1716 |
| Eco47I | GGWCC | 2 cut(s) | 355, 1054 |
| Eco52I | CGGCCG | 1 cut(s) | 160 |
| Eco57I | CTGAAG | 4 cut(s) | 320, 1556, 1606, 1674 |
| Eco72I | CACGTG | 1 cut(s) | 889 |
| Eco88I | CYCGRG | 1 cut(s) | 872 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 362 |
| EcoO109I | RGGNCCY | 2 cut(s) | 355, 1054 |
| EcoRI | GAATTC | 1 cut(s) | 824 |
| EcoRII | CCWGG | 3 cut(s) | 363, 933, 1635 |
| EcoT14I | CCWWGG | 1 cut(s) | 1716 |
| ErhI | CCWWGG | 1 cut(s) | 1716 |
| Esp3I | CGTCTC | 1 cut(s) | 2034 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1368, 1400, 1913, 1945 |
| FaqI | GGGAC | 5 cut(s) | 172, 629, 1618, 1975, 2357 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FauNDI | CATATG | 1 cut(s) | 1708 |
| FbaI | TGATCA | 1 cut(s) | 1152 |
| FblI | GTMKAC | 1 cut(s) | 1070 |
| Fnu4HI | GCNGC | 8 cut(s) | 163, 166, 447, 450, 857, 980, 2196, 2228 |
| FokI | GGATG | 9 cut(s) | 28, 52, 950, 1049, 1078, 1172, 1451, 1733, 2063 |
| Fsp4HI | GCNGC | 8 cut(s) | 163, 166, 447, 450, 857, 980, 2196, 2228 |
| FspBI | CTAG | 5 cut(s) | 732, 986, 1953, 2220, 2336 |
| GlaI | GCGC | 2 cut(s) | 169, 992 |
| GluI | GCNGC | 8 cut(s) | 163, 166, 447, 450, 857, 980, 2196, 2228 |
| GsaI | CCCAGC | 3 cut(s) | 175, 205, 1359 |
| HaeII | RGCGCY | 1 cut(s) | 994 |
| HaeIII | GGCC | 9 cut(s) | 89, 123, 162, 200, 368, 471, 687, 1640, 1702 |
| HapII | CCGG | 5 cut(s) | 216, 257, 637, 684, 2288 |
| HgaI | GACGC | 1 cut(s) | 1283 |
| HhaI | GCGC | 2 cut(s) | 170, 993 |
| Hin6I | GCGC | 2 cut(s) | 168, 991 |
| HinP1I | GCGC | 2 cut(s) | 168, 991 |
| HindIII | AAGCTT | 2 cut(s) | 1346, 1927 |
| HpaII | CCGG | 5 cut(s) | 216, 257, 637, 684, 2288 |
| HphI | GGTGA | 3 cut(s) | 648, 673, 731 |
| Hpy166II | GTNNAC | 6 cut(s) | 373, 388, 926, 1023, 1071, 2365 |
| Hpy8I | GTNNAC | 6 cut(s) | 373, 388, 926, 1023, 1071, 2365 |
| Hpy99I | CGWCG | 3 cut(s) | 155, 158, 161 |
| HpyAV | CCTTC | 7 cut(s) | 253, 833, 1067, 1456, 1568, 1630, 2119 |
| HpyCH4III | ACNGT | 8 cut(s) | 633, 900, 1629, 1829, 1891, 2099, 2134, 2259 |
| HpyCH4IV | ACGT | 2 cut(s) | 888, 2043 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 211, 257, 314, 988, 1788 |
| HpySE526I | ACGT | 2 cut(s) | 888, 2043 |
| HspAI | GCGC | 2 cut(s) | 168, 991 |
| Kpn2I | TCCGGA | 1 cut(s) | 636 |
| KroI | GCCGGC | 1 cut(s) | 2287 |
| KroNI | GCCGGC | 1 cut(s) | 2289 |
| Ksp22I | TGATCA | 1 cut(s) | 1152 |
| Kzo9I | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| LmnI | GCTCC | 4 cut(s) | 26, 1717, 1864, 2092 |
| Lsp1109I | GCAGC | 5 cut(s) | 433, 868, 991, 2182, 2214 |
| LweI | GCATC | 6 cut(s) | 928, 1269, 1498, 1890, 1903, 2182 |
| MaeI | CTAG | 5 cut(s) | 732, 986, 1953, 2220, 2336 |
| MaeII | ACGT | 2 cut(s) | 888, 2043 |
| MaeIII | GTNAC | 3 cut(s) | 679, 1823, 2234 |
| MalI | GATC | 5 cut(s) | 525, 701, 1154, 1467, 2309 |
| MboI | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| MflI | RGATCY | 2 cut(s) | 523, 1465 |
| MhlI | GDGCHC | 4 cut(s) | 390, 535, 672, 1394 |
| MlsI | TGGCCA | 2 cut(s) | 471, 1702 |
| MluCI | AATT | 9 cut(s) | 181, 417, 675, 824, 1556, 1595, 1739, 1813, 2241 |
| MluNI | TGGCCA | 2 cut(s) | 471, 1702 |
| MlyI | GAGTC | 4 cut(s) | 412, 730, 1625, 2242 |
| MmeI | TCCRAC | 2 cut(s) | 168, 2287 |
| Mox20I | TGGCCA | 2 cut(s) | 471, 1702 |
| MroI | TCCGGA | 1 cut(s) | 636 |
| MroNI | GCCGGC | 1 cut(s) | 2287 |
| MroXI | GAANNNNTTC | 2 cut(s) | 227, 781 |
| MscI | TGGCCA | 2 cut(s) | 471, 1702 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1154 |
| Msp20I | TGGCCA | 2 cut(s) | 471, 1702 |
| MspA1I | CMGCKG | 1 cut(s) | 1791 |
| MspCI | CTTAAG | 1 cut(s) | 1081 |
| MspI | CCGG | 5 cut(s) | 216, 257, 637, 684, 2288 |
| MspR9I | CCNGG | 4 cut(s) | 216, 365, 935, 1637 |
| Mva1269I | GAATGC | 1 cut(s) | 1277 |
| MvaI | CCWGG | 3 cut(s) | 365, 935, 1637 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 211, 257, 314, 988, 1788 |
| NaeI | GCCGGC | 1 cut(s) | 2289 |
| NciI | CCSGG | 1 cut(s) | 216 |
| NcoI | CCATGG | 1 cut(s) | 1716 |
| NdeI | CATATG | 1 cut(s) | 1708 |
| NdeII | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| NgoMIV | GCCGGC | 1 cut(s) | 2287 |
| NlaIV | GGNNCC | 1 cut(s) | 2276 |
| NmeAIII | GCCGAG | 1 cut(s) | 1942 |
| NmuCI | GTSAC | 3 cut(s) | 679, 1823, 2234 |
| NspI | RCATGY | 2 cut(s) | 856, 2001 |
| PagI | TCATGA | 1 cut(s) | 1735 |
| PctI | GAATGC | 1 cut(s) | 1277 |
| PdiI | GCCGGC | 1 cut(s) | 2289 |
| PdmI | GAANNNNTTC | 2 cut(s) | 227, 781 |
| PfeI | GAWTC | 7 cut(s) | 547, 777, 1042, 1100, 1306, 1946, 2057 |
| PkrI | GCNGC | 8 cut(s) | 164, 167, 448, 451, 858, 981, 2197, 2229 |
| PleI | GAGTC | 4 cut(s) | 411, 730, 1624, 2241 |
| PmaCI | CACGTG | 1 cut(s) | 889 |
| PmlI | CACGTG | 1 cut(s) | 889 |
| PpsI | GAGTC | 4 cut(s) | 411, 730, 1624, 2241 |
| Ppu21I | YACGTR | 1 cut(s) | 889 |
| PpuMI | RGGWCCY | 2 cut(s) | 355, 1054 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1630 |
| PsiI | TTATAA | 1 cut(s) | 1292 |
| Psp5II | RGGWCCY | 2 cut(s) | 355, 1054 |
| Psp6I | CCWGG | 3 cut(s) | 363, 933, 1635 |
| PspCI | CACGTG | 1 cut(s) | 889 |
| PspFI | CCCAGC | 3 cut(s) | 171, 201, 1355 |
| PspGI | CCWGG | 3 cut(s) | 363, 933, 1635 |
| PspN4I | GGNNCC | 1 cut(s) | 2276 |
| PspPI | GGNCC | 3 cut(s) | 199, 355, 1054 |
| PspPPI | RGGWCCY | 2 cut(s) | 355, 1054 |
| PstI | CTGCAG | 3 cut(s) | 459, 973, 1989 |
| PsuI | RGATCY | 2 cut(s) | 523, 1465 |
| RsaI | GTAC | 8 cut(s) | 264, 835, 878, 1127, 1369, 1697, 1787, 2333 |
| RsaNI | GTAC | 8 cut(s) | 263, 834, 877, 1126, 1368, 1696, 1786, 2332 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1154 |
| SatI | GCNGC | 8 cut(s) | 163, 166, 447, 450, 857, 980, 2196, 2228 |
| Sau3AI | GATC | 5 cut(s) | 523, 699, 1152, 1465, 2307 |
| Sau96I | GGNCC | 3 cut(s) | 199, 355, 1054 |
| ScaI | AGTACT | 1 cut(s) | 878 |
| SchI | GAGTC | 4 cut(s) | 412, 730, 1625, 2242 |
| ScrFI | CCNGG | 4 cut(s) | 216, 365, 935, 1637 |
| SduI | GDGCHC | 4 cut(s) | 390, 535, 672, 1394 |
| SfaNI | GCATC | 6 cut(s) | 928, 1269, 1498, 1890, 1903, 2182 |
| SfcI | CTRYAG | 3 cut(s) | 455, 969, 1985 |
| SinI | GGWCC | 2 cut(s) | 355, 1054 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1154 |
| SmlI | CTYRAG | 4 cut(s) | 809, 1081, 1385, 1777 |
| SmoI | CTYRAG | 4 cut(s) | 809, 1081, 1385, 1777 |
| Sse9I | AATT | 9 cut(s) | 181, 417, 675, 824, 1556, 1595, 1739, 1813, 2241 |
| SsiI | CCGC | 8 cut(s) | 163, 166, 190, 449, 725, 1300, 1791, 2176 |
| SspMI | CTAG | 5 cut(s) | 732, 986, 1953, 2220, 2336 |
| StyD4I | CCNGG | 4 cut(s) | 214, 363, 933, 1635 |
| StyI | CCWWGG | 1 cut(s) | 1716 |
| TaaI | ACNGT | 8 cut(s) | 633, 900, 1629, 1829, 1891, 2099, 2134, 2259 |
| TaiI | ACGT | 2 cut(s) | 891, 2046 |
| TaqII | GACCGA | 1 cut(s) | 1556 |
| TasI | AATT | 9 cut(s) | 181, 417, 675, 824, 1556, 1595, 1739, 1813, 2241 |
| TatI | WGTACW | 2 cut(s) | 876, 1785 |
| TauI | GCSGC | 3 cut(s) | 165, 168, 452 |
| TfiI | GAWTC | 7 cut(s) | 547, 777, 1042, 1100, 1306, 1946, 2057 |
| TscAI | CASTG | 4 cut(s) | 459, 1832, 2139, 2161 |
| TseFI | GTSAC | 3 cut(s) | 679, 1823, 2234 |
| TseI | GCWGC | 5 cut(s) | 446, 856, 979, 2195, 2227 |
| Tsp45I | GTSAC | 3 cut(s) | 679, 1823, 2234 |
| TspGWI | ACGGA | 1 cut(s) | 593 |
| TspRI | CASTG | 4 cut(s) | 459, 1832, 2139, 2161 |
| Vha464I | CTTAAG | 1 cut(s) | 1081 |
| VneI | GTGCAC | 1 cut(s) | 386 |
| VpaK11BI | GGWCC | 2 cut(s) | 355, 1054 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 362 |
| XapI | RAATTY | 2 cut(s) | 824, 1813 |
| XbaI | TCTAGA | 1 cut(s) | 985 |
| XceI | RCATGY | 2 cut(s) | 856, 2001 |
| XmiI | GTMKAC | 1 cut(s) | 1070 |
| XmnI | GAANNNNTTC | 2 cut(s) | 227, 781 |
| XspI | CTAG | 5 cut(s) | 732, 986, 1953, 2220, 2336 |
| ZrmI | AGTACT | 1 cut(s) | 878 |