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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 668 |
| AccI | GTMKAC | 1 cut(s) | 244 |
| AclWI | GGATC | 1 cut(s) | 757 |
| AcsI | RAATTY | 3 cut(s) | 165, 347, 621 |
| AcyI | GRCGYC | 1 cut(s) | 318 |
| AfaI | GTAC | 4 cut(s) | 90, 577, 583, 653 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 602 |
| AgsI | TTSAA | 5 cut(s) | 225, 413, 524, 610, 683 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 289 |
| AjnI | CCWGG | 1 cut(s) | 465 |
| AluBI | AGCT | 4 cut(s) | 409, 569, 679, 707 |
| AluI | AGCT | 4 cut(s) | 409, 569, 679, 707 |
| Alw26I | GTCTC | 6 cut(s) | 180, 297, 439, 446, 480, 700 |
| AlwI | GGATC | 1 cut(s) | 757 |
| AoxI | GGCC | 1 cut(s) | 463 |
| ApeKI | GCWGC | 1 cut(s) | 599 |
| ApoI | RAATTY | 3 cut(s) | 165, 347, 621 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 226, 258, 735, 767 |
| AseI | ATTAAT | 1 cut(s) | 177 |
| AsuHPI | GGTGA | 2 cut(s) | 641, 713 |
| AsuII | TTCGAA | 1 cut(s) | 485 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BanI | GGYRCC | 1 cut(s) | 668 |
| BbsI | GAAGAC | 2 cut(s) | 288, 531 |
| BbvI | GCAGC | 1 cut(s) | 611 |
| BccI | CCATC | 4 cut(s) | 108, 143, 191, 300 |
| BciT130I | CCWGG | 1 cut(s) | 467 |
| BcoDI | GTCTC | 6 cut(s) | 180, 297, 439, 446, 480, 700 |
| BfaI | CTAG | 5 cut(s) | 146, 152, 303, 393, 642 |
| BfmI | CTRYAG | 3 cut(s) | 15, 450, 597 |
| BisI | GCNGC | 1 cut(s) | 600 |
| BlsI | GCNGC | 1 cut(s) | 601 |
| Bme1390I | CCNGG | 1 cut(s) | 467 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 289 |
| BmiI | GGNNCC | 2 cut(s) | 266, 670 |
| BmrFI | CCNGG | 1 cut(s) | 467 |
| BmsI | GCATC | 1 cut(s) | 37 |
| BpiI | GAAGAC | 2 cut(s) | 288, 531 |
| Bpu14I | TTCGAA | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 1 cut(s) | 421 |
| BsaAI | YACGTR | 1 cut(s) | 248 |
| BsaBI | GATNNNNATC | 1 cut(s) | 134 |
| BsaHI | GRCGYC | 1 cut(s) | 318 |
| BsaJI | CCNNGG | 1 cut(s) | 747 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 602 |
| Bse1I | ACTGG | 1 cut(s) | 670 |
| Bse8I | GATNNNNATC | 1 cut(s) | 134 |
| BseBI | CCWGG | 1 cut(s) | 467 |
| BseDI | CCNNGG | 1 cut(s) | 747 |
| BseGI | GGATG | 4 cut(s) | 52, 135, 228, 388 |
| BseJI | GATNNNNATC | 1 cut(s) | 134 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BseMII | CTCAG | 1 cut(s) | 711 |
| BseNI | ACTGG | 1 cut(s) | 670 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| BseXI | GCAGC | 1 cut(s) | 611 |
| BsgI | GTGCAG | 1 cut(s) | 561 |
| BshFI | GGCC | 1 cut(s) | 465 |
| BshNI | GGYRCC | 1 cut(s) | 668 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 602 |
| BsmAI | GTCTC | 6 cut(s) | 180, 297, 439, 446, 480, 700 |
| BsmBI | CGTCTC | 1 cut(s) | 700 |
| BsnI | GGCC | 1 cut(s) | 465 |
| Bsp119I | TTCGAA | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 1 cut(s) | 673 |
| Bsp143I | GATC | 2 cut(s) | 33, 762 |
| Bsp19I | CCATGG | 1 cut(s) | 747 |
| BspANI | GGCC | 1 cut(s) | 465 |
| BspCNI | CTCAG | 1 cut(s) | 710 |
| BspLI | GGNNCC | 2 cut(s) | 266, 670 |
| BspMAI | CTGCAG | 1 cut(s) | 601 |
| BspPI | GGATC | 1 cut(s) | 757 |
| BspT104I | TTCGAA | 1 cut(s) | 485 |
| BspT107I | GGYRCC | 1 cut(s) | 668 |
| BsrI | ACTGG | 1 cut(s) | 670 |
| BssECI | CCNNGG | 1 cut(s) | 747 |
| BssMI | GATC | 2 cut(s) | 33, 762 |
| BssNI | GRCGYC | 1 cut(s) | 318 |
| BssT1I | CCWWGG | 1 cut(s) | 747 |
| Bst2UI | CCWGG | 1 cut(s) | 467 |
| Bst4CI | ACNGT | 3 cut(s) | 383, 482, 656 |
| Bst6I | CTCTTC | 1 cut(s) | 226 |
| BstACI | GRCGYC | 1 cut(s) | 318 |
| BstBAI | YACGTR | 1 cut(s) | 248 |
| BstBI | TTCGAA | 1 cut(s) | 485 |
| BstDEI | CTNAG | 1 cut(s) | 697 |
| BstDSI | CCRYGG | 1 cut(s) | 747 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 600 |
| BstF5I | GGATG | 4 cut(s) | 52, 135, 228, 388 |
| BstKTI | GATC | 2 cut(s) | 36, 765 |
| BstMAI | GTCTC | 6 cut(s) | 180, 297, 439, 446, 480, 700 |
| BstMBI | GATC | 2 cut(s) | 33, 762 |
| BstNI | CCWGG | 1 cut(s) | 467 |
| BstSCI | CCNGG | 1 cut(s) | 465 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 450, 597 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstSNI | TACGTA | 1 cut(s) | 248 |
| BstV1I | GCAGC | 1 cut(s) | 611 |
| BstV2I | GAAGAC | 2 cut(s) | 288, 531 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 748 |
| BsuRI | GGCC | 1 cut(s) | 465 |
| BtgI | CCRYGG | 1 cut(s) | 747 |
| BtsCI | GGATG | 4 cut(s) | 52, 135, 228, 388 |
| BtsI | GCAGTG | 1 cut(s) | 209 |
| BtsIMutI | CAGTG | 5 cut(s) | 43, 209, 342, 379, 478 |
| CseI | GACGC | 1 cut(s) | 326 |
| Csp6I | GTAC | 4 cut(s) | 89, 576, 582, 652 |
| CviAII | CATG | 4 cut(s) | 76, 269, 748, 776 |
| CviJI | RGCY | 8 cut(s) | 409, 455, 465, 569, 679, 707, 746, 807 |
| CviKI_1 | RGCY | 8 cut(s) | 409, 455, 465, 569, 679, 707, 746, 807 |
| CviQI | GTAC | 4 cut(s) | 89, 576, 582, 652 |
| DdeI | CTNAG | 1 cut(s) | 697 |
| DpnI | GATC | 2 cut(s) | 35, 764 |
| DpnII | GATC | 2 cut(s) | 33, 762 |
| DraI | TTTAAA | 2 cut(s) | 163, 619 |
| DriI | GACNNNNNGTC | 1 cut(s) | 289 |
| Eam1104I | CTCTTC | 1 cut(s) | 226 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 289 |
| EarI | CTCTTC | 1 cut(s) | 226 |
| Eco105I | TACGTA | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 1 cut(s) | 747 |
| Eco147I | AGGCCT | 1 cut(s) | 465 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 600 |
| EcoRII | CCWGG | 1 cut(s) | 465 |
| EcoT14I | CCWWGG | 1 cut(s) | 747 |
| ErhI | CCWWGG | 1 cut(s) | 747 |
| Esp3I | CGTCTC | 1 cut(s) | 700 |
| FaeI | CATG | 4 cut(s) | 79, 272, 751, 779 |
| FatI | CATG | 4 cut(s) | 75, 268, 747, 775 |
| FblI | GTMKAC | 1 cut(s) | 244 |
| Fnu4HI | GCNGC | 1 cut(s) | 600 |
| FokI | GGATG | 4 cut(s) | 59, 122, 215, 375 |
| Fsp4HI | GCNGC | 1 cut(s) | 600 |
| FspBI | CTAG | 5 cut(s) | 146, 152, 303, 393, 642 |
| GluI | GCNGC | 1 cut(s) | 600 |
| HaeIII | GGCC | 1 cut(s) | 465 |
| HgaI | GACGC | 1 cut(s) | 326 |
| Hin1I | GRCGYC | 1 cut(s) | 318 |
| Hin1II | CATG | 4 cut(s) | 79, 272, 751, 779 |
| HindIII | AAGCTT | 1 cut(s) | 677 |
| HinfI | GANTC | 1 cut(s) | 432 |
| HphI | GGTGA | 2 cut(s) | 641, 713 |
| Hpy166II | GTNNAC | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 2 cut(s) | 373, 431 |
| Hpy188III | TCNNGA | 2 cut(s) | 26, 170 |
| Hpy8I | GTNNAC | 1 cut(s) | 245 |
| HpyAV | CCTTC | 3 cut(s) | 80, 255, 390 |
| HpyCH4III | ACNGT | 3 cut(s) | 383, 482, 656 |
| HpyCH4IV | ACGT | 1 cut(s) | 247 |
| HpyCH4V | TGCA | 3 cut(s) | 214, 542, 599 |
| HpyF3I | CTNAG | 1 cut(s) | 697 |
| HpySE526I | ACGT | 1 cut(s) | 247 |
| Hsp92I | GRCGYC | 1 cut(s) | 318 |
| Hsp92II | CATG | 4 cut(s) | 79, 272, 751, 779 |
| Kzo9I | GATC | 2 cut(s) | 33, 762 |
| Lsp1109I | GCAGC | 1 cut(s) | 611 |
| LweI | GCATC | 1 cut(s) | 37 |
| MaeI | CTAG | 5 cut(s) | 146, 152, 303, 393, 642 |
| MaeII | ACGT | 1 cut(s) | 247 |
| MaeIII | GTNAC | 2 cut(s) | 314, 629 |
| MalI | GATC | 2 cut(s) | 35, 764 |
| MboI | GATC | 2 cut(s) | 33, 762 |
| MboII | GAAGA | 3 cut(s) | 213, 293, 536 |
| MhlI | GDGCHC | 1 cut(s) | 673 |
| MluCI | AATT | 9 cut(s) | 41, 165, 174, 178, 347, 413, 621, 718, 796 |
| MlyI | GAGTC | 1 cut(s) | 441 |
| MnlI | CCTC | 2 cut(s) | 229, 429 |
| MseI | TTAA | 5 cut(s) | 162, 177, 618, 635, 770 |
| MspR9I | CCNGG | 1 cut(s) | 467 |
| MvaI | CCWGG | 1 cut(s) | 467 |
| NcoI | CCATGG | 1 cut(s) | 747 |
| NdeII | GATC | 2 cut(s) | 33, 762 |
| NlaIII | CATG | 4 cut(s) | 79, 272, 751, 779 |
| NlaIV | GGNNCC | 2 cut(s) | 266, 670 |
| NmuCI | GTSAC | 2 cut(s) | 314, 629 |
| NspV | TTCGAA | 1 cut(s) | 485 |
| PceI | AGGCCT | 1 cut(s) | 465 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 491 |
| PkrI | GCNGC | 1 cut(s) | 601 |
| PleI | GAGTC | 1 cut(s) | 440 |
| PpsI | GAGTC | 1 cut(s) | 440 |
| Ppu21I | YACGTR | 1 cut(s) | 248 |
| PshBI | ATTAAT | 1 cut(s) | 177 |
| Psp6I | CCWGG | 1 cut(s) | 465 |
| PspGI | CCWGG | 1 cut(s) | 465 |
| PspN4I | GGNNCC | 2 cut(s) | 266, 670 |
| PstI | CTGCAG | 1 cut(s) | 601 |
| RsaI | GTAC | 4 cut(s) | 90, 577, 583, 653 |
| RsaNI | GTAC | 4 cut(s) | 89, 576, 582, 652 |
| SaqAI | TTAA | 5 cut(s) | 162, 177, 618, 635, 770 |
| SatI | GCNGC | 1 cut(s) | 600 |
| Sau3AI | GATC | 2 cut(s) | 33, 762 |
| SchI | GAGTC | 1 cut(s) | 441 |
| ScrFI | CCNGG | 1 cut(s) | 467 |
| SduI | GDGCHC | 1 cut(s) | 673 |
| SfaNI | GCATC | 1 cut(s) | 37 |
| SfcI | CTRYAG | 3 cut(s) | 15, 450, 597 |
| SfuI | TTCGAA | 1 cut(s) | 485 |
| SmlI | CTYRAG | 1 cut(s) | 436 |
| SmoI | CTYRAG | 1 cut(s) | 436 |
| SnaBI | TACGTA | 1 cut(s) | 248 |
| Sse9I | AATT | 9 cut(s) | 41, 165, 174, 178, 347, 413, 621, 718, 796 |
| SseBI | AGGCCT | 1 cut(s) | 465 |
| SspMI | CTAG | 5 cut(s) | 146, 152, 303, 393, 642 |
| StuI | AGGCCT | 1 cut(s) | 465 |
| StyD4I | CCNGG | 1 cut(s) | 465 |
| StyI | CCWWGG | 1 cut(s) | 747 |
| TaaI | ACNGT | 3 cut(s) | 383, 482, 656 |
| TaiI | ACGT | 1 cut(s) | 250 |
| TaqI | TCGA | 2 cut(s) | 259, 485 |
| TasI | AATT | 9 cut(s) | 41, 165, 174, 178, 347, 413, 621, 718, 796 |
| TatI | WGTACW | 1 cut(s) | 651 |
| Tru1I | TTAA | 5 cut(s) | 162, 177, 618, 635, 770 |
| Tru9I | TTAA | 5 cut(s) | 162, 177, 618, 635, 770 |
| TscAI | CASTG | 5 cut(s) | 43, 216, 349, 386, 485 |
| TseFI | GTSAC | 2 cut(s) | 314, 629 |
| TseI | GCWGC | 1 cut(s) | 599 |
| Tsp45I | GTSAC | 2 cut(s) | 314, 629 |
| TspGWI | ACGGA | 2 cut(s) | 341, 563 |
| TspRI | CASTG | 5 cut(s) | 43, 216, 349, 386, 485 |
| VspI | ATTAAT | 1 cut(s) | 177 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 600 |
| XapI | RAATTY | 3 cut(s) | 165, 347, 621 |
| XmiI | GTMKAC | 1 cut(s) | 244 |
| XspI | CTAG | 5 cut(s) | 146, 152, 303, 393, 642 |