Rorug05G0108900

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
9668858 .. 9669820
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0108900.1

Sequence Viewer

Length: 822 bp
ATGGCCAAAACACCACCAACTGCAGTCCAAGATTCAACGAAAGCCTACAAATTCGAAGAACATTATCCTCAAGAACCCCACAAATCTAGTGCAAGATCCTTGATTGCCTTCTTCTTCTCTATACTAATTTACACTTCCATCTTCTATATTTTCAACCTCTCTCCTTCCACTCTCTTCTACAACACCAAGTTTTGGTTTGCGATATCCAACACCCTGATTCTTATCATTGCAGCCGACTACTCTTCTTCTAAAGACAAGCACGACCAGATTAATTACCAAGAAGAGTATATGATGCATAGGCAAGCTCAAACTACTTCGAATTCCTCATTTGTTTTGGAATACCCTCGTGAAATAGTCAAGGAAACCATTATTGATCACCAAGTTGCACGTCAAAATATACGAAACCCAGAAAACAGGCAAATTGTGCTTAAAGACGAGCATGATGAAAAGCCTAGTGTTGATGATATTGATGTCCAAGAAAAGAAAATAGTCCACGTACAGTCAAAAGGTGGTAAGAAAGAAAATATTCAAGCAAAAACTTACAAGCGAAGTAAGTCGGAGAAGGTGAAAAGAGTGGTGATCGACGAATGCAAGAGCAATATTATAAGGAGGTCGGAGACAATGGAGAAGCACGAAGAAACTCAAGTAAGTACTCCGGAAGAAGTTATTGATGAATTCTCAACCATGTCAGATGAAGAACTGATTCAACTGAACAGAAGATGTGAAGAGTTTATTCAAAGCTTTAATGAACAAATTAGGCATCAATCAGTTGCAGACAGAAGGCCCAAAAAACCTACCATCATGTCTAAAGTTCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

273

Amino Acids

32.07

Weight (kDa)

6.53

Isoelectric Point (pI)

68.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13780 AT1G13780 AT1G16930 AT1G16930 AT1G16930 AT1G16940 AT1G16945 AT1G51370 AT1G51370 AT1G51370 AT1G60400 AT1G60410 AT1G66290 AT1G66300 AT1G66300 AT1G66310 AT1G66320 AT1G66640 AT1G69630 AT1G78730 AT1G78740 AT1G78750 AT1G78750 AT1G78760 AT1G78840 AT1G78840 AT1G80470 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G26030 AT2G27505 AT3G19085 AT3G19085 AT3G23955 AT3G23955 AT4G13985 AT5G18770 AT5G18770 AT5G18780 AT5G18780 AT5G18780 AT5G18780 AT5G22590 AT5G22600 AT5G22600 AT5G22610 AT5G22610 AT5G22660 AT5G22660 AT5G22670 AT5G22680 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22700 AT5G22720 AT5G22730 AT5G22730 AT5G22730 AT5G25850 AT5G27750 AT5G27750 AT5G44490 AT5G44490 AT5G44940 AT5G44950 AT5G44960 AT5G44970 AT5G44980 AT5G44980 AT5G44980 AT5G44980 AT5G53592 AT5G53635 AT5G53637 AT5G53640 AT5G53840
fragaria_vesca FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g00860 FvH4_1g01470 FvH4_1g01500 FvH4_1g06320 FvH4_1g06320 FvH4_1g09701 FvH4_1g09890 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_2g40800 FvH4_3g17060 FvH4_3g17061 FvH4_3g17061 FvH4_3g17061 FvH4_3g17080 FvH4_3g17080 FvH4_3g17080 FvH4_3g17090 FvH4_3g17100 FvH4_3g17110 FvH4_3g17130 FvH4_3g17160 FvH4_3g17160 FvH4_3g17161 FvH4_3g17190 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g18021 FvH4_3g21162 FvH4_3g21162 FvH4_3g21190 FvH4_4g14821 FvH4_4g14841 FvH4_4g14850 FvH4_5g35600 FvH4_6g23651 FvH4_6g38031
malus_domestica MD03G1246000.v1.1 MD03G1252900.v1.1 MD03G1253200.v1.1 MD03G1253500.v1.1 MD03G1253700.v1.1 MD08G1193400.v1.1 MD11G1256200.v1.1 MD11G1265900.v1.1 MD11G1266000.v1.1 MD11G1266700.v1.1 MD11G1266800.v1.1 MD11G1266900.v1.1 MD11G1267000.v1.1 MD11G1274900.v1.1 MD11G1275300.v1.1
prunus_persica Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158700_v2.0.a1 Prupe.4G158800_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G158900_v2.0.a1 Prupe.4G159000_v2.0.a1
pyrus_communis pycom03g19500 pycom03g20040 pycom03g20080 pycom03g20130 pycom03g20140 pycom08g16650 pycom11g22660 pycom11g23380 pycom11g23390 pycom11g23450 pycom11g23470 pycom11g23480 pycom11g23490 pycom11g24250
rosa_chinensis RchiOBHm_Chr1g0321381 RchiOBHm_Chr4g0417361 RchiOBHm_Chr4g0417391 RchiOBHm_Chr4g0417401 RchiOBHm_Chr4g0417411 RchiOBHm_Chr4g0417471 RchiOBHm_Chr5g0028391 RchiOBHm_Chr5g0028401 RchiOBHm_Chr5g0028441 RchiOBHm_Chr5g0028451 RchiOBHm_Chr5g0028461 RchiOBHm_Chr5g0028471 RchiOBHm_Chr5g0028481 RchiOBHm_Chr5g0028491 RchiOBHm_Chr5g0028501 RchiOBHm_Chr5g0028511 RchiOBHm_Chr5g0028521 RchiOBHm_Chr5g0028541 RchiOBHm_Chr5g0028551 RchiOBHm_Chr5g0028581 RchiOBHm_Chr5g0040081 RchiOBHm_Chr7g0192741 RchiOBHm_Chr7g0237071
rosa_laevigata RLG00000007914 RLG00000033090 RLG00000033092 RLG00000033096 RLG00000033097 RLG00000033098 RLG00000033099 RLG00000033100
rosa_multiflora Rmu_sc0000103.1_g000060 Rmu_sc0000272.1_g000005 Rmu_sc0000272.1_g000006 Rmu_sc0001134.1_g000002 Rmu_sc0001561.1_g000020 Rmu_sc0001561.1_g000021 Rmu_sc0001575.1_g000002 Rmu_sc0001575.1_g000007 Rmu_sc0001575.1_g000008 Rmu_sc0001575.1_g000010 Rmu_sc0001575.1_g000013 Rmu_sc0002131.1_g000038 Rmu_sc0004142.1_g000020 Rmu_sc0004142.1_g000021 Rmu_sc0004142.1_g000026 Rmu_sc0004142.1_g000027 Rmu_sc0004142.1_g000028 Rmu_sc0005594.1_g000010 Rmu_sc0006771.1_g000001 Rmu_sc0006771.1_g000002 Rmu_sc0006771.1_g000003 Rmu_sc0006771.1_g000004 Rmu_sc0006771.1_g000007 Rmu_sc0008526.1_g000014 Rmu_sc0009797.1_g000001
rosa_roxburghii Rroxscaffold_1G00041210 Rroxscaffold_1G00051210 Rroxscaffold_1G00051220 Rroxscaffold_1G00051230 Rroxscaffold_1G00051240 Rroxscaffold_1G00051280 Rroxscaffold_1G00051310 Rroxscaffold_3G00224520 Rroxscaffold_3G00224530 Rroxscaffold_5G00361120 Rroxscaffold_6G00412010
rosa_rugosa Rorug04G0147300 Rorug04G0147400 Rorug04G0147500 Rorug04G0147700 Rorug04G0147800 Rorug05G0107100 Rorug05G0107300 Rorug05G0107600 Rorug05G0107600 Rorug05G0107700 Rorug05G0107800 Rorug05G0107900 Rorug05G0108000 Rorug05G0108100 Rorug05G0108200 Rorug05G0108400 Rorug05G0108500 Rorug05G0108600 Rorug05G0108700 Rorug05G0108900 Rorug05G0109000 Rorug05G0109100 Rorug05G0109300 Rorug05G0109400 Rorug05G0109500 Rorug05G0183200 Rorug05G0183300 Rorug05G0183400 Rorug07G0187200 Rorug07G0301700 Rorug07G0301700 Rorug07G0301800
rosa_samantha Rh1AG413100 Rh1CG047800 Rh4AG210900 Rh4AG211000 Rh4AG211100 Rh4BG141000 Rh4BG211300 Rh4CG221700 Rh4CG221800 Rh4CG221900 Rh4DG208700 Rh4DG208800 Rh4DG208900 Rh5AG199800 Rh5AG200100 Rh5AG200200 Rh5AG200500 Rh5AG200600 Rh5AG200700 Rh5AG200800 Rh5AG200900 Rh5AG201000 Rh5AG201100 Rh5AG201300 Rh5AG201400 Rh5AG269900 Rh5BG198300 Rh5BG198500 Rh5BG198900 Rh5BG199000 Rh5BG199400 Rh5BG199500 Rh5BG199600 Rh5BG199700 Rh5BG199800 Rh5BG273400 Rh5CG218400 Rh5CG219200 Rh5CG219300 Rh5CG219400 Rh5CG219500 Rh5CG219700 Rh5CG219800 Rh5CG306300 Rh5CG306400 Rh5DG200300 Rh5DG200500 Rh5DG200600 Rh5DG201100 Rh5DG201200 Rh5DG201300 Rh5DG201400 Rh5DG201500 Rh5DG201600 Rh5DG201700 Rh5DG201800 Rh5DG201900 Rh5DG202100 Rh5DG202400 Rh5DG202500 Rh5DG203100 Rh5DG281500 Rh7AG457900 Rh7BG320900 Rh7BG428600 Rh7CG476000 Rh7DG445100 Rh7DG445200
rosa_wichuraiana Rw0G014200 Rw0G014210 Rw1G003950 Rw4G017810 Rw4G017820 Rw4G017850 Rw5G018220 Rw5G018230 Rw5G018250 Rw5G018260 Rw5G018270 Rw5G018280 Rw5G025230 Rw7G037950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AccB7I CCANNNNNTGG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 655
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 50, 319, 674
AfaI GTAC 2 cut(s) 498, 652
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 5 cut(s) 36, 154, 530, 707, 737
AjiI CACGTC 1 cut(s) 389
AluBI AGCT 2 cut(s) 305, 741
AluI AGCT 2 cut(s) 305, 741
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 1 cut(s) 90
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 2 cut(s) 3, 782
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 3 cut(s) 50, 319, 674
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 2 cut(s) 525, 702
AspS9I GGNCC 1 cut(s) 783
AsuHPI GGTGA 3 cut(s) 368, 577, 589
AsuII TTCGAA 2 cut(s) 54, 317
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 146, 806
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 2 cut(s) 87, 453
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 783
BmsI GCATC 2 cut(s) 282, 769
Bpu14I TTCGAA 2 cut(s) 54, 317
BpuEI CTTGAG 2 cut(s) 54, 627
BsaAI YACGTR 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 655
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 784
BsiSI CCGG 1 cut(s) 656
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 593
BsnI GGCC 2 cut(s) 5, 784
Bsp119I TTCGAA 2 cut(s) 54, 317
Bsp13I TCCGGA 1 cut(s) 655
Bsp143I GATC 3 cut(s) 95, 373, 579
BspANI GGCC 2 cut(s) 5, 784
BspEI TCCGGA 1 cut(s) 655
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 90
BspT104I TTCGAA 2 cut(s) 54, 317
BsrDI GCAATG 1 cut(s) 225
BssMI GATC 3 cut(s) 95, 373, 579
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 501
Bst6I CTCTTC 4 cut(s) 179, 247, 276, 720
BstAPI GCANNNNNTGC 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 496
BstBI TTCGAA 2 cut(s) 54, 317
BstC8I GCNNGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 98, 376, 582
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 3 cut(s) 95, 373, 579
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 2 cut(s) 5, 784
BtrI CACGTC 1 cut(s) 389
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 783
Csp6I GTAC 2 cut(s) 497, 651
CviAII CATG 3 cut(s) 440, 685, 802
CviJI RGCY 7 cut(s) 5, 44, 233, 305, 451, 741, 784
CviKI_1 RGCY 7 cut(s) 5, 44, 233, 305, 451, 741, 784
CviQI GTAC 2 cut(s) 497, 651
DpnI GATC 3 cut(s) 97, 375, 581
DpnII GATC 3 cut(s) 95, 373, 579
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 179, 247, 276, 720
EarI CTCTTC 4 cut(s) 179, 247, 276, 720
Eco32I GATATC 1 cut(s) 204
EcoRI GAATTC 2 cut(s) 319, 674
EcoRV GATATC 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 297
FaeI CATG 3 cut(s) 443, 688, 805
FatI CATG 3 cut(s) 439, 684, 801
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 2 cut(s) 87, 453
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 5, 784
HapII CCGG 1 cut(s) 656
Hin1II CATG 3 cut(s) 443, 688, 805
HindIII AAGCTT 1 cut(s) 739
HinfI GANTC 3 cut(s) 32, 217, 703
HpaII CCGG 1 cut(s) 656
HphI GGTGA 3 cut(s) 368, 577, 589
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 3 cut(s) 559, 616, 691
Hpy188III TCNNGA 4 cut(s) 71, 347, 656, 815
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 4 cut(s) 118, 174, 556, 774
HpyCH4III ACNGT 1 cut(s) 501
HpyCH4IV ACGT 2 cut(s) 388, 495
HpyCH4V TGCA 7 cut(s) 23, 92, 230, 295, 386, 591, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpySE526I ACGT 2 cut(s) 388, 495
Hsp92II CATG 3 cut(s) 443, 688, 805
Kpn2I TCCGGA 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 95, 373, 579
LpnPI CCDG 5 cut(s) 227, 278, 400, 420, 669
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 2 cut(s) 282, 769
MaeI CTAG 2 cut(s) 87, 453
MaeII ACGT 2 cut(s) 388, 495
MalI GATC 3 cut(s) 97, 375, 581
MboI GATC 3 cut(s) 95, 373, 579
MflI RGATCY 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 50, 126, 271, 319, 420, 674, 753
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 231, 537, 594
MnlI CCTC 5 cut(s) 78, 167, 334, 354, 603
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 297
MroI TCCGGA 1 cut(s) 655
MroXI GAANNNNTTC 2 cut(s) 525, 702
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 270, 429, 744
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 593
MwoI GCNNNNNNNGC 1 cut(s) 424
NdeII GATC 3 cut(s) 95, 373, 579
NlaIII CATG 3 cut(s) 443, 688, 805
NsiI ATGCAT 1 cut(s) 297
NspV TTCGAA 2 cut(s) 54, 317
PctI GAATGC 1 cut(s) 593
PdmI GAANNNNTTC 2 cut(s) 525, 702
PfeI GAWTC 3 cut(s) 32, 217, 703
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 496
PshBI ATTAAT 1 cut(s) 270
PsiI TTATAA 1 cut(s) 605
PspPI GGNCC 1 cut(s) 783
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 2 cut(s) 498, 652
RsaNI GTAC 2 cut(s) 497, 651
SaqAI TTAA 3 cut(s) 270, 429, 744
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 95, 373, 579
Sau96I GGNCC 1 cut(s) 783
ScaI AGTACT 1 cut(s) 652
SetI ASST 9 cut(s) 159, 307, 391, 498, 511, 567, 614, 743, 796
SfaNI GCATC 2 cut(s) 282, 769
SfcI CTRYAG 1 cut(s) 21
SfuI TTCGAA 2 cut(s) 54, 317
SmlI CTYRAG 3 cut(s) 69, 642, 815
SmoI CTYRAG 3 cut(s) 69, 642, 815
Sse9I AATT 7 cut(s) 50, 126, 271, 319, 420, 674, 753
SspI AATATT 2 cut(s) 526, 601
SspMI CTAG 2 cut(s) 87, 453
TaaI ACNGT 1 cut(s) 501
TaiI ACGT 2 cut(s) 391, 498
TaqI TCGA 3 cut(s) 54, 317, 582
TasI AATT 7 cut(s) 50, 126, 271, 319, 420, 674, 753
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 3 cut(s) 32, 217, 703
Tru1I TTAA 3 cut(s) 270, 429, 744
Tru9I TTAA 3 cut(s) 270, 429, 744
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 4 cut(s) 459, 687, 708, 762
Van91I CCANNNNNTGG 1 cut(s) 192
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 50, 319, 674
XmnI GAANNNNTTC 2 cut(s) 525, 702
XspI CTAG 2 cut(s) 87, 453
ZrmI AGTACT 1 cut(s) 652
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.